Li, Qiwei. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2010. / Includes bibliographical references (p. 75-85). / Abstracts in English and Chinese. / Abstract --- p.i / Acknowledgement --- p.iv / Chapter 1 --- Introduction --- p.1 / Chapter 1.1 --- Repetitive DNA Sequence --- p.3 / Chapter 1.1.1 --- Definition and Categorization of Repeti- tive DNA Sequence --- p.3 / Chapter 1.1.2 --- Definition and Categorization of Tandem Repeats --- p.4 / Chapter 1.1.3 --- Definition and Categorization of Interspersed Repeats --- p.6 / Chapter 1.2 --- Research Significance --- p.7 / Chapter 1.3 --- Contributions --- p.9 / Chapter 1.4 --- Thesis Organization --- p.11 / Chapter 2 --- Literature Review and Overview of Our Method --- p.13 / Chapter 2.1 --- Existing Methods --- p.14 / Chapter 2.2 --- Overview of Our Method --- p.17 / Chapter 3 --- Theoretical Background --- p.22 / Chapter 3.1 --- Multinomial Distributions --- p.23 / Chapter 3.2 --- Dirichlet Distribution --- p.23 / Chapter 3.3 --- Metropolis-Hastings Sampling --- p.25 / Chapter 3.4 --- Gibbs Sampling --- p.26 / Chapter 4 --- Problem Description --- p.28 / Chapter 4.1 --- Generative Model --- p.29 / Chapter 4.1.1 --- Input Data R --- p.31 / Chapter 4.1.2 --- Parameters A (Repeat Segment Starting Positions) --- p.32 / Chapter 4.1.3 --- Parameters S (Repeat Segment Structures) --- p.33 / Chapter 4.1.4 --- Parameters θ(Motif Matrix) --- p.35 / Chapter 4.1.5 --- Parameters Φ (Background Distribution) . --- p.36 / Chapter 4.1.6 --- An Example of the Model Schematic Di- agram --- p.37 / Chapter 4.2 --- Parameter Structure --- p.38 / Chapter 4.3 --- Posterior Distribution --- p.40 / Chapter 4.3.1 --- The Full Posterior Distribution --- p.41 / Chapter 4.3.2 --- The Collapsed Posterior Distribution --- p.42 / Chapter 4.4 --- Conclusion --- p.43 / Chapter 5 --- Methodology --- p.45 / Chapter 5.1 --- Schematic Procedure --- p.46 / Chapter 5.1.1 --- The Basic Schematic Procedure --- p.46 / Chapter 5.1.2 --- The Improved Schematic Procedure --- p.47 / Chapter 5.2 --- Initialization --- p.49 / Chapter 5.3 --- Predictive Update Step for θn and Φn --- p.50 / Chapter 5.4 --- Gibbs Sampling Step for an --- p.50 / Chapter 5.5 --- Metropolis-Hastings Sampling Step for sn --- p.51 / Chapter 5.5.1 --- Rear Indel Move --- p.53 / Chapter 5.5.2 --- Partial Shift Move --- p.56 / Chapter 5.5.3 --- Front Indel Move --- p.56 / Chapter 5.6 --- Phase Shifts --- p.57 / Chapter 5.7 --- Conclusion --- p.58 / Chapter 6 --- Results and Discussion --- p.60 / Chapter 6.1 --- Settings --- p.61 / Chapter 6.2 --- Experiment on Synthetic Data --- p.63 / Chapter 6.3 --- Experiment on Real Data --- p.69 / Chapter 7 --- Conclusion and Future Work --- p.72 / Chapter 7.1 --- Conclusion --- p.72 / Chapter 7.2 --- Future Work --- p.74 / Bibliography --- p.75
| Identifer | oai:union.ndltd.org:cuhk.edu.hk/oai:cuhk-dr:cuhk_327234 |
| Date | January 2010 |
| Contributors | Li, Qiwei., Chinese University of Hong Kong Graduate School. Division of Information Engineering. |
| Source Sets | The Chinese University of Hong Kong |
| Language | English, Chinese |
| Detected Language | English |
| Type | Text, bibliography |
| Format | print, xiv, 85 p. : ill. ; 30 cm. |
| Rights | Use of this resource is governed by the terms and conditions of the Creative Commons “Attribution-NonCommercial-NoDerivatives 4.0 International” License (http://creativecommons.org/licenses/by-nc-nd/4.0/) |
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