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Peregrine Falcon (Falco peregrinus) Subspecies Phylogenomics Using Whole Genome Re-Sequencing

Peregrine falcon subspecies taxonomy is widely debated due to uncertainty in their evolutionary history and unresolved phylogenetic reconstruction using both morphological and molecular data. Previous genetic work has shown limited support for subspecies taxonomy largely as a result of molecular markers used, potential contemporary gene flow, incomplete lineage sorting, and ancestral polymorphisms. With the advent of next-generation sequencing, the cost of generating large amounts of sequence data has dropped significantly, making whole genome re-sequencing (WGR) studies of non-model organisms more tangible. In this study, WGR methods have been utilized to investigate the phylogenetic relationships among all 20 currently recognized peregrine falcon subspecies. By generating whole-genome data for all 20 subspecies, subspecies specific diagnostic SNPs have been identified to aid in subspecies delimitation. Results of this study broadly support current subspecies, however, reveal that further study is needed to investigate regional relationships among subspecies in Asia, Australia, and western North America. With these results, conservation efforts can be further supported by allowing for accurate delimitation of local subspecies and subspecies boundaries.

Identiferoai:union.ndltd.org:unt.edu/info:ark/67531/metadc1752345
Date12 1900
CreatorsMeeks, Garrett W.
ContributorsJohnson, Jeff A., Castoe, Todd, Bednarz, James C. (James Cary)
PublisherUniversity of North Texas
Source SetsUniversity of North Texas
LanguageEnglish
Detected LanguageEnglish
TypeThesis or Dissertation
Formatvi, 67 pages : illustrations (some color), maps (some color), Text
RightsPublic, Meeks, Garrett W., Copyright, Copyright is held by the author, unless otherwise noted. All rights Reserved.

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