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Ultrafast Excited State Dynamics in DNA and other Nanomaterials

Thesis advisor: Torsten Fiebig / Thesis advisor: Mary Roberts / Understanding the electronic nature of DNA is profound and has been attempted for decades. Photoexcitation of DNA with UV light deposits electronic energy in the base stack and prepares highly reactive excited states. These states are precursors for photoinduced damage reactions which can lead to mutations and ultimately to cell death. While many DNA photo products have been isolated and characterized, the primary events immediately after photon absorption are not yet understood. Recent studies with ultrafast lasers have revealed that the majority of excess energy gained by DNA with light absorbance is dissipated on the femtosecond and picosecond time scales. In this study double-stranded oligonucleotides with different base sequences, content and lengths were systematically examined using femtosecond pump-probe spectroscopy. The results indicate that excitations in DNA are delocalized over more than two bases and the extent of the delocalization depends strongly on the structure of the investigated systems. Exciton delocalization domains in the longer duplexes are larger than in the shorter ones. Also, single-stranded oligonucleotides show smaller extent of exciton delocalization than duplexes with the same length. In addition to the fundamental studies on DNA photophysics, the properties and the structure of new molecular beacons based on thiazole orange dimers were studied. A full account of the optical and structural properties of the dimers in different base environments and orientations is presented here. Currently, the development of efficient ways to utilizing solar energy is at the forefront of the scientific community due to the ever rising demand for energy. Both, colloidal semiconductor nanocrystals and single-walled carbon nanotubes are potential alternatives to conventional inorganic and organic materials in photovoltaic devices Thorough understanding of the charge transfer and related photophysical phenomena in these systems will answer the question whether these nanomaterials can be applied in future generations of solar cells. The photoinduced electron transfer in donor-acceptor CdSe/CdTe heterostructured nanorods, in which CdTe is grown on top of CdSe in a single rod structure, was studied. The electron transfer between the two nanocrystals occurs on the subpicosecond time scale, competing with the ultrafast relaxation mechanisms in the quantum confined nanocrystals. Furthermore, investigations on how quantum confinement influences the phonon wavepackets in semiconductor nanocrystals were carried out. Quantum beats corresponding to longitudinal optical phonon modes were observed in the femtosecond pump-probe spectra of colloidal CdTe nanocrystals. Size-dependent experiments revealed that the optical phonon frequencies and the exciton-phonon coupling strength do not depend on the crystal's size. Only the wavepacket dephasing time was influenced by the diameter of the particles which was correlated with the hole relaxation to the exciton band edge. Electron donor-acceptor constructs, based on single-walled carbon nanotubes (SWNT), can be attained by noncovalent functionalization of the nanotubes with pyrene derivatives. However, charge transfer does not take place in the simplest pyrene-SWNT constructs. For the first time the pure SWNT-pyrene construct was isolated and investigated. Our results revealed that the optical properties of pyrene are drastically altered due to strong electronic interactions with the SWNT surface. In other words, aromatic molecules lose their electronic (and chemical) signature when non-covalently attached to carbon nanotubes. / Thesis (PhD) — Boston College, 2010. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Chemistry.

Identiferoai:union.ndltd.org:BOSTON/oai:dlib.bc.edu:bc-ir_101338
Date January 2010
CreatorsDimitrov, Stoichko Dimitrov
PublisherBoston College
Source SetsBoston College
LanguageEnglish
Detected LanguageEnglish
TypeText, thesis
Formatelectronic, application/pdf
RightsCopyright is held by the author, with all rights reserved, unless otherwise noted.

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