Escherichia coli NikR is a metal-responsive transcription factor that controls nickel uptake by regulating expression of a nickel-specific transporter, NikABCDE. NikR contains a high-affinity nickel-binding site, and nickel must occupy this site in order to activate DNA binding. Stoichiometric amounts of nickel bind to this site and stabilize the α3 helix and the preceding loop (residues 63 – 79). The α3 helix forms non-specific electrostatic interactions with the DNA. The current hypothesis is that nickel activates NikR-DNA binding by organizing α3 helix and activating non-specific DNA contacts, allowing NikR to scan along the DNA until it reaches the nik promoter. This presentation will examine this hypothesis by generating a nickel independent NikR through mutagenesis.
| Identifer | oai:union.ndltd.org:TORONTO/oai:tspace.library.utoronto.ca:1807/65590 |
| Date | 03 July 2014 |
| Creators | Mortazavi, Seyedeh Mahshid |
| Contributors | Deborah, Zamble |
| Source Sets | University of Toronto |
| Language | en_ca |
| Detected Language | English |
| Type | Thesis |
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