The pollution of South Africa’s water resources puts a strain on an already stressed natural resource. One of the main pollution sources is industrial effluents such as acid mine drainage (AMD) and other mining effluents. These effluents usually contain high levels of acidity, heavy metals and sulphate. A popular method to treat these effluents before they are released into the environment is lime neutralisation. Although this method is very effective to raise the pH of the effluent as well as to precipitate the heavy metals, it can only partially remove the sulphate. Further treatment is required to reduce the sulphate level further to render the water suitable for discharge into the environment. A number of sulphate removal methods are available and used in industry. These methods can be divided into physical (membrane filtration, adsorption/ion exchange), chemical (chemical precipitation) and biological sulphate reduction processes. A literature study was conducted in order to compare these different methods. The ABC (Alkali – Barium – Calcium) Desalination process uses barium carbonate to lower the final sulphate concentration to an acceptable level. Not only can the sulphate removal be controlled due to the low solubility of barium sulphate, but it can also produce potable water and allows valuable by–products such as sulphur to be recovered from the sludge. The toxic barium is recycled within the process and should therefore not cause additional problems. In this study the sulphate removal process, using barium carbonate as reactant, was investigated. Several parameters have been investigated and studied by other authors. These parameters include different barium salts, different barium carbonate types, reaction kinetics, co–precipitation of calcium carbonate, barium–to–sulphate molar ratios, the effect of temperature and pH. The sulphate removal process was tested and verified on three different industrial effluents. The results and conclusions from these publications were used to guide the experimental work. A number of parameters were examined under laboratory conditions in order to find the optimum conditions for the precipitation reaction to take place. This included mixing rotational speed, barium–to–sulphate molar ratio, initial sulphate concentration, the effect of temperature and the influence of different barium carbonate particle structures. It was found that the reaction temperature and the particle structure of barium carbonate influenced the process significantly. The mixing rotational speed, barium–to–sulphate dosing ratios and the initial sulphate concentration influenced the removal process, but not to such a great extent as the two previously mentioned parameters. The results of these experiments were then tested and verified on AMD from a coal mine. The results from the literature analysis were compared to the experiments conducted in the laboratory. It was found that the results reported in the literature and the laboratory results correlated well with each other. Though, in order to optimise this sulphate removal process, one has to understand the sulphate precipitation reaction. Therefore it is recommended that a detailed reaction kinetic study should be conducted to establish the driving force of the kinetics of the precipitation reactions. In order to upgrade this process to pilot–scale and then to a full–scale plant, continuous reactor configurations should also be investigated. The sulphate removal stage in the ABC Desalination Process is the final treatment step. The effluent was measured against the SANS Class II potable water standard and was found that the final water met all the criteria and could be safely discharged into the environment. / Thesis (M.Ing. (Chemical Engineering))--North-West University, Potchefstroom Campus, 2012.

Zinc is a metal involved in structure of many enzymes, in the growth and differentiation of plants. Wheat is one of the most consumed cereals. Some wheat cultivars can&amp / #8217 / t deal with zinc deficiency and this situation not only reduces grain yield but also weakens the resistance of cereals to diseases and impairs the nutritional quality of the grain. Some wheat cultivars are not affected by zinc deficiency. In this study, &amp / #8216 / differential display&amp / #8217 / , used for determination differentially expressed genes between two samples, was performed. The most zinc efficient bread wheat cultivar Kira&ccedil / -66 was grown in hydroponics medium and samples were taken at different time periods. RNA isolations were done and differential display technique was performed. After examining the results, differentially expressed bands were selected and sequenced. DNA sequence analysis were done in available databases which showed that three of the bands were fragments of putative zinc transporters. In this study we have found threee putative gene fragments using differential display technique on zinc efficient plants grown under differeing zinc concentrations. These fragments showed homology with zinc transporter, ABC transporter and ADH (Alcohol Dehydrogenase). It is known that all of these three genes are involved in zinc efficiency mechanism. Further studies will be conducted on these gene fragments.

BspA was first identified on the basis of being the major constituent of 5 M LiCl washes of whole Lactobacillus fermentum BR11 cells. The bspA gene is encoded within a putative ATP-binding cassette (ABC) transport operon, and sequence analysis revealed that it is a member of the family III solute binding proteins. Unlike the majority of solute binding proteins from Gram-positive bacteria, BspA is not tethered to a lipid anchor in the cell membrane, and hence is not a lipoprotein. Extraction of BspA with concentrated salt solutions such as 5 M LiCl is consistent with the notion that electrostatic interactions are responsible for securing it to the L. fermentum BR11 cell. L. fermentum PNG201 is a BspA negative mutant strain created by disrupting bspA. This strain was shown to be incapable of cystine uptake. Thus, the genetic and biochemical evidence strongly suggests BspA is a cystine binding protein of an ABC transporter. Measurement of the binding affinity between BspA and L-cystine has confirmed high affinity binding (dissociation constant is 0.2 µM), and high specificity (over 100-fold excess of non-target amino acids did not disrupt BspA / L-cystine binding). In addition, collagen did not appear to affect BspA/cystine binding, indicating extracellular matrix (ECM) binding capacity noted by other researchers may be unrelated to amino acid binding. An interesting phenotypic characteristic of L. fermentum PNG201 is its apparent increased sensitivity to oxygen and the superoxide-generating chemical - paraquat compared to the parent L. fermentum BR11 strain. Catalase supplemented aerobic cultures of L. fermentum BR11, and L. fermentum PNG201 were protected from oxidative stress, suggesting hydrogen peroxide is responsible for the observed oxidative stress. It was found that addition of cystine to aerobic cultures of L. fermentum BR11 or L. fermentum PNG201 protected both strains from oxidative stress, with L. fermentum BR11 able to utilize smaller concentrations of cystine compared to L. fermentum PNG201. Detection of hydrogen peroxide in aerobic cultures of L. fermentum BR11 and L. fermentum PNG201 confirmed the production of hydrogen peroxide is responsible for causing oxidative stress. The BspA mutant strain L. fermentum PNG201 consistently produced more hydrogen peroxide per optical density compared with the wild type, indicating it overproduced hydrogen peroxide. When 0.4 mM hydrogen peroxide has been accumulated by growing cell cultures, both L. fermentum BR11 and L. fermentum PNG201 enters stationary phase, suggesting both strains have a similar sensitivity to hydrogen peroxide. Small epitopes from the HIV gp41 protein and the Chlamydia psittaci major outer membrane protein have been successfully displayed on the cell surface of L. fermentum BR11 as fusion proteins to the BspA molecule. However, the capability of BspA in exporting larger polypeptides has not been tested. In this study, the large extracellular enzyme - glucosyltransferase (GtfJ) from Streptococcus salivarius ATCC 25975 was fused to BspA to demonstrate that this expression system is capable of exporting large functional enzymes to the cell surface of L. fermentum BR11. The native GtfJ is 160kDa in size and also contained an export signal, which was deleted in the cloning process and replaced with BspA, resulting in a fusion protein of 175kDa. Export of the BspA/GtfJ fusion protein is dependant entirely on BspA's export signal. Recombinant enzyme expression and glucosyltransferase activity were detected by measuring the glucan formed by sonicated cell extracts in acrylamide gels. Enzyme activity measurements on whole cells has revealed the recombinant Lactobacillus was incorporating 20-40 nmol of sucrose-derived-glucose into glucan per ml of cell culture per OD unit, which is comparable to activity levels exhibited by the native bacteria that expressed this enzyme. Comparison of GtfJ enzyme activity between whole cells and sonicated cell extracts of recombinant L. fermentum confirmed the extracellular location of BspA/GtfJ as enzyme activity was essentially identical.

Several Fusarium species can cause Fusarium head blight (FHB) and Fusarium crown rot (FCR) diseases in wheat and these are of economic importance in wheat production systems globally. Fusarium graminearum represents a model pathogen species to study these diseases because it has a sequenced genome, commercially available gene expression arrays and an growing collection of mutants impaired in pathogenicity and virulence, at least for FHB. FCR occurs at the stem base of the wheat plant, causing major reductions in grain yield. FCR has been much less intensively researched than FHB and the infection process of F. graminearum during crown rot disease in wheat has not been studied previously at the molecular level. Fungal biomass estimations by real-time quantitative PCR analysis of DNA from inoculated plants identified three distinct phases of infection during FCR, an initial increase in fungal mass in phase 1 up to 2 days post inoculation (dpi), then a reduction during phase 2 until 14 dpi followed by a large increase thereon in phase 3 that corresponded to symptom development. Histological characterisation of F. graminearum colonisation during these three phases of infection showed that initially the spores germinated on the stem surface at the point of inoculation forming a superficial hyphal mat. This occurred within the first two days of infection. The second phase was characterised by a period of low amounts of fungal tissue present in the infected plants and 14 days following infection hyphae were only observed below the point of inoculation at the stem base of the wheat seedling and had penetrated and colonised the adaxial epidermis of the outer leaf sheath. Following this, the third phase was characterised by a major colonisation of the internal tissues of the crown which corresponded to visible symptom development around 35 days after inoculation. Fungal gene expression during all three phases of infection were examined using the Affymetrix GeneChip system comprised of 22,000 F. graminearum gene probe sets. This analysis showed 1,839 genes were significantly up regulated in planta compared to axenic vegetative mycelia, including some known FHB virulence genes (e.g. those involved in the biosynthesis of trichothecene toxins). Fungal genes differentially regulated between the phases were identified indicating that FCR disease development requires a coordinated process involving distinct fungal gene expression programs. A bioinformatic comparison of global F. graminearum gene expression during FCR of wheat with published data for FHB of barley indicated similarities at very early stages of infection but divergence thereafter. It was decided to functionally test whether F. graminearum utilises the same virulence genes in FCR and FHB diseases. Because no virulence genes have been previously identified from FCR studies a small group of genes were initially selected from the FCR gene expression studies for further functional analysis using gene knock-out technology. Only two of these genes showed a changed phenotype during Fusarium infection of wheat plants and they encoded a probable ABC transporter (FgABC1) and a probable superoxide dismutase (FgSOD1). It was interesting to note that even though both FgABC1 and FgSOD1 exhibited similar transcription profiles during both FCR of wheat and FHB of barley it was found that FgABC1 was specifically required for full FCR disease development on the wheat cultivar Kennedy whereas FgSOD1 was specifically required for FHB disease on the same cultivar. This indicated that F. graminearum virulence genes can show specificity to the infection of different plant tissues and that these types of genes cannot be predicted based only on their transcription profiles. It is suggested that F. graminearum induces a global set of virulence factors but only some of these may be effective in particular tissues. To test further whether there was tissue specialisation for specific tissues and FCR & FHB diseases, a group of F. graminearum genes that were known virulence factors during FHB were tested to see if they were also virulence factors for FCR. This analysis showed that two genes displayed specificity only for FHB and five were virulence factors for both FHB and FCR. One of the genes that was a virulence factor for both diseases was the Tri5 gene that is necessary for the biosynthesis of trichothecene mycotoxins. This gene and these toxins did not appear to be necessary for symptom development and the induction of host defence responses but were necessary for fungal colonisation of the crown and stem in later stages of infection. Interestingly there were parallels in the role played by the Tri5 gene in FCR and that reported for FHB where it is necessary for colonisation for the spike. This study is the first molecular analysis of any Fusarium species during crown rot of wheat. Importantly, it shows that there may be specialisation towards host tissues for some virulence genes but also suggests that some factors may be non-specifically required for infection and it is these factors that will represent attractive targets for future control measures of both diseases.

Universiẗat, Diss., 2006--Frankfurt (Main).

University, Diss., 2006--Frankfurt (Main). / Zsfassung in engl. und dt. Sprache.

University, Diss., 2006--Frankfurt (Main). / Erscheinungsjahr an der Haupttitelstelle: 2005.

Frankfurt (Main), Univ., Diss., 2009 / Erscheinungsjahr an der Haupttitelstelle: 2008

Thesis (M.S.)--Butler University, 1995. / Includes bibliographical references (leaves x-xiii).

Thèse (M.Sc.)--Université Laval, 2008. / Bibliogr.: f. [101]-118. Publié aussi en version électronique dans la Collection Mémoires et thèses électroniques.