Non-equilibrium plasma modification of polymer surfaces in an oxygen atmosphere provides a highly efficient, solventless method of raising the surface energy. The chemical and physical effects of non-equilibrium plasma treatment on polymer surfaces have been investigated. Oxygen glow discharge and silent discharge treatment of several polymers (polypropylene, polystyrene, polyphenylene oxide and polycarbonate) has been shown to cause both surface oxidation and chain scission at the polymer surface. This generates low molecular weight oxidised material on the polymer surface which conglomerates into globular features due to the difference in surface energy between the oxidised material and the untreated polymer. These features can be removed by solvent washing. Generally silent discharge treatment generates more low molecular weight oxidised material whereas oxygen glow discharge treatment generates more non-soluble oxidised material. Crystalline polymers react at a slower rate than amorphous material. During the treatment of a model crystalline polymer (hexatriacontane) the plasma attacks the edges of the crystal, rather than the surface, due to the greater chain mobility at the edge. Non-equilibrium plasma treatment of both miscible and immiscible polymer blends were investigated. The size and distribution of the globular features formed were found to be dependent on the blend composition. For the immicible polymer blend, non-equilibrium plasma treatment reveals the blend morphology mi sing from the difference in reaction rates of the parent polymers.

Thesis (Ph. D.)--Duke University, 2007. / Includes bibliographical references.

Thesis (Master)--İzmir Institute Of Technology, İzmir, 2006 / Keywords: Atomic force microscope, self assembled monolayer organic films, nanolithografy Includes bibliographical references (leaves. 109-112).

Thesis (Ph. D.)--School of Chemistry and Biochemistry, Georgia Institute of Technology, 2005. Directed by Lawrence A. Bottomley. / William D. Hunt, Committee Member ; Nicholas V. Hud, Committee Member ; L. Andrew Lyon, Committee Member ; Lawrence A. Bottomley, Committee Chair ; Loren D. Williams, Committee Member. Vita. Includes bibliographical references.

Thesis (Ph. D.)--University of Washington, 2004. / Vita. Includes bibliographical references (leaves 141-161).

Thesis (Ph.D)--Mechanical Engineering, Georgia Institute of Technology, 2009. / Committee Chair: Zhu, Cheng; Committee Member: Degertekin, Levent; Committee Member: Fox, Ronald; Committee Member: Garcia, Andres; Committee Member: McIntire, Larry. Part of the SMARTech Electronic Thesis and Dissertation Collection. Non-Latin script record

Thesis (M.S.)--Worcester Polytechnic Institute. / Keywords: Atomic force microscopy; proteins; Pseudomonas aeruginosa. Includes bibliographical references (leaves 107-130).

Thesis (Ph. D.)--University of Washington, 2000. / Vita. Includes bibliographical references (leaves 94-102).

The research described in this thesis aimed to evaluate the intrinsic DNA curvature ofthe region of the TP53 tumour suppressor gene that codes for the sequence-specific DNA-binding domain of the p53 protein, a key protein that protects the cell from chemical insultsand tumourogenesis. There have been no previous attempts to experimentally investigate theintrinsic DNA curvature within TP53 or its relation to the functional or structural properties ofthe gene, such as DNA repair and nucleosomal architecture. The present study usedtheoretical models of TP53 in concert with an atomic force microscopy based experimentalinvestigation of TP53 DNA molecules to analyse intrinsic DNA curvature within the gene. Thiswas achieved by developing a novel software platform for the atomic force microscopy basedinvestigation of DNA curvature, named ADIPAS. Dinucleotide wedge models of DNA curvaturewere used to model TP53 in order to investigate the relationship between intrinsic DNAcurvature and the structure and function of the gene. ADIPAS was applied to atomic forcemicroscopy images of TP53 DNA molecules immobilised on a mica surface in order toexperimentally measure intrinsic DNA curvature. The experimental findings were compared totheoretical models of intrinsic curvature in TP53. The resulting intrinsic curvature profilesshowed that exons exhibited significantly lower intrinsic DNA curvature than introns withinTP53, this was also shown to be true for regions of slow DNA repair. This indicated that DNAcurvature may play a role in TP53 as a controlling factor for nucleosomal architecture tofacilitate open chromatin and active DNA transcription. The evolutionary selection for intrinsiccurvature may have played a role in the development of exons with low intrinsic DNAcurvature. Low intrinsic curvature in exon position has also been implicated in the reducedefficiency of DNA repair in a number of cancer specific mutation hotspots.

The complex structures of water-soluble wheat arabinoxylans have been mapped along individual molecules, and within populations, using the visualisation of the binding of inactivated enzymes by atomic force microscopy (AFM). It was demonstrated that site-directed mutagenesis (SDM) can be used to produce inactive enzymes as structural probes. For the SDM mutants AFM has been used to compare the binding of different xylanases to arabinoxylans. Xylanase mutant E386A, derived from the Xyn11A enzyme (Neocallimastrix patriciarium), was shown to bind randomly along arabinoxylan molecules. The xylanase binding was also monitored following Aspergillus niger arabinofuranosidase pre-treatment of samples. It was demonstrated that removal of arabinose side chains significantly altered the binding pattern of the inactivated enzyme. Xylanase mutant E246A, derived from the Xyn10A enzyme (Cellvibrio japonicus), was found to show deviations from random binding to the arabinoxylan chains. It is believed that this is due to the effect of a small residual catalytic activity of the enzyme that alters the binding pattern of the probe. Control procedures were developed and assessed to establish that the interactions between the modified xylanases and the arabinoxylans were specific interactions. The experimental data demonstrates the potential for using inactivated enzymes and AFM to probe the structural heterogeneity of individual polysaccharide molecules.