In this thesis we make a new measurement of the primordial deuterium abundance, and analyse five other systems selected as possible D/H candidates. We also undertake an investigation of systematic errors in a system where an existing deuterium measurement has been made. We measure the number of hydrogen components and their velocity distributions in a moderate and high redshift sample of Lyman limit systems in one Angstrom resolution spectra. We present a new measurement of the deuterium-to-hydrogen ratio, D/H, at z=3.2560 in a newly-discovered low metallicity absorption system towards the quasar PG1937-1009. We attempt to account for any systematic effects that could influence the D/H measurement. We find a 1 sigma range for D/H*1e5 of 1.6 (+0.25) (-0.30). Using high resolution spectra from the Hubble Space Telescope and the Very Large Telescope, we assess the suitability of five D/H candidate absorption systems. These systems were selected as candidates using lower resolution spectra. We measure the neutral hydrogen column density, identify metal lines and analyse the velocity structure of each system, and show them to be unsuitable for measuring D/H. We also investigate the systematic errors in the absorber at z=0.701 towards quasar PG1718-4801 that was initially thought to show a high primordial D/H value. We analyse the dependence of the putative deuterium line's parameters on wavelength calibration errors in the HST spectra and present a revised deuterium measurement. We examine the velocity widths of two samples of one Angstrom resolution quasar spectra showing Lyman limit absorption systems. The first sample is at high redshifts, taken from the Sloan quasar data release 3 catalogue. The second is at intermediate redshifts, compiled from a survey for UV quasar absorption systems taken with the Hubble Space Telescope. We use a modified version of the Voigt profile fitting program, VPFIT, to estimate the number of hydrogen velocity components and column density in the Lyman limit systems. We compare the velocity distributions of the higher and lower redshift samples. We find the distributions are consistent with other measures of the velocity spread in absorption systems, and find no compelling evidence for evolution between the redshift samples.

Abstract Three newly selected strains of Cyclopia rhizobia together with an inoculant strain, which has never been tested in the field with adequate experimental design, was assessed under both nursery and field conditions for symbiotic performance. The three new test strains were initially selected for their superior Nz-fixing abilities under glasshouse conditions, and then evaluated in this study for field performance. Cyclopia subternata Vogel and Cyclopia genistoides (L.) R. Br., which have the potential for producing high quality honeybushtea, were used as host plants in both the nursery and field studies.The effect of seedling inoculation at the nursery level was also examined for the four test strains under nursery conditions. The inoculation of cuttings under nursery conditions produced.significant increases in shoot biomass, shoot %N and shoot N content. More specifically, inoculating C. subternata with strains UCT44b and UCT61a significantly increased shoot biomass and N content relative to strain PPRICI3. Strains UCT44b and UCT61a also showed better nodulation with C. subternata cuttings compared to strains UCHOa and PPRICI3. Field inoculation of Cyclopia increased all growth parameters relative to the uninoculated control, except for leaf %N. Cyclopia subternata inoculated with strains UCT44b, UCT40a and UCT61a produced significantly lower b15N values than the uninoculatedC. subternata reference plant. Using the 15N natural abundance method, C. subternata was estimated to be gaining about half of its N from Nz fixation, while C. genistoides obtained less than half of itsN from symbioticnutrition.

Abstract Three newly selected strains of Cyclopia rhizobia together with an inoculant strain, which has never been tested in the field with adequate experimental design, was assessed under both nursery and field conditions for symbiotic performance. The three new test strains were initially selected for their superior Nz-fixing abilities under glasshouse conditions, and then evaluated in this study for field performance. Cyclopia subternata Vogel and Cyclopia genistoides (L.) R. Br., which have the potential for producing high quality honeybushtea, were used as host plants in both the nursery and field studies.The effect of seedling inoculation at the nursery level was also examined for the four test strains under nursery conditions. The inoculation of cuttings under nursery conditions produced.significant increases in shoot biomass, shoot %N and shoot N content. More specifically, inoculating C. subternata with strains UCT44b and UCT61a significantly increased shoot biomass and N content relative to strain PPRICI3. Strains UCT44b and UCT61a also showed better nodulation with C. subternata cuttings compared to strains UCHOa and PPRICI3. Field inoculation of Cyclopia increased all growth parameters relative to the uninoculated control, except for leaf %N. Cyclopia subternata inoculated with strains UCT44b, UCT40a and UCT61a produced significantly lower b15N values than the uninoculatedC. subternata reference plant. Using the 15N natural abundance method, C. subternata was estimated to be gaining about half of its N from Nz fixation, while C. genistoides obtained less than half of itsN from symbioticnutrition.

The objective of the current study was to analyse the effect of landscape structure (habitat size and exposure to farmland) on the occurrence and abundance of Lobaria pulmonaria, a foliose cyanolichen. Since the agrarian revolution during the 19th century the agricultural landscape has become increasingly fragmented resulting in isolated meadows and wood-pastures surrounded by farmland. Lobaria pulmonaria is one of the species being affected by this habitat change, much due to their dispersal limitations, specific habitat demands and susceptibility to air pollution. 36 localities of two different size classes (< 1.5 ha and > 4.5 ha) and two different exposure classes (exposed or unexposed to farmland) were studied. The occurrence, size of lichen thallus and height of lichen patches on tree trunks were significantly positively affected by habitat size and negatively affected by habitat exposure. The implications of these findings for strategies to manage and conserve L. pulmonaria in a fragmented landscape are discussed.

No description available.

The purpose of this study was to investigate whether there is regional variation in the abundance and habitat use of tiger sharks (Galeocerdo cuvier) within in a model seagrass ecosystem. Abundance was determined with catch rates on drumlines and habitat preferences were investigated using acoustic tracking of large tiger sharks (n=4). I found spatiotemporal variation in the probability of catching at least one shark and in catch rates on days sharks were caught. In general, sharks were present throughout more of the year and in higher abundances in the northern region. Habitat use also varied between regions. In the northern region, sharks moved randomly with respect to habitat, while in the southern region sharks preferred shallow habitats. Although preliminary, these results suggest that large predator abundance and habitat use may vary over relatively small spatial scales and that such variation may be useful for elucidating their ecological role.

The role of individual soil microorganisms changes over the course of a plant's life - microorganisms that have no discernable role at one developmental stage may affect the plant later in its growth. Traditional analysis of the soil microbiome, which has focused principally on the relative abundances (RA) of individual organisms, may be incomplete, as underlying differences in population size cannot be addressed. We conducted a metagenomic analysis of soil microorganisms from various maize (Zea mays L.) fields at two depths, accompanied by crop yield components, to provide insight into influences of edaphic microbes on maize productivity under commercial maize production systems in Missouri. This study assesses the influence of fungi and bacteria, not only in terms of RA, but also in their estimated absolute abundances (EAA), derived by combining the results of Illumina HiSeq sequencing data and phospholipid fatty acid abundance data. Significant interactions were identified between maize yield components and soil microbes at critical developmental states. Most interactions between fungi and yield components were negative, with notable exceptions. Bacterial interactions were more complex, with most interactions during early ear development identified as positive, and most interactions during tasseling identified as negative. In addition to the effects that microbial populations have on yield, plant populations reciprocally changed the microbial community. Plant developmental state was the greatest predictor of bacteria, with the microbial communities present during the active growing season being most similar to each other, whereas the preplant microbiome and post-reproductive microbiome being most similar to each other. Fungal communities were primarily dependent on location.

No description available.

"A Telemetric monitoring of the feral pigeon ( Columba livia f. domestica) population at the Karlovo náměstí square in Prague" This thesis deals with both the monitoring of numbers in the pigeon (Columba livia f. domestica, "the Pigeon") sites in question and also the spatial definition of the daily activities of individual specimens using a telemetric system. Previous researches gathered data on population density and food routes usually obtained by observation. Therefore we believe it's important to supplement this data with spatial movement maps of individuals that cannot be obtained by observation but the telemetry system allows us to do so in certain time period. The data obtained from GPS trackers will be processed into daily spatial activity maps of the specimen. These data will hopefully help us to gain insight into the life of not just specific individuals, but will also allow us to derive spatial activity of the entire population living in the locality in question. The results will be compared with the results from the previous pigeon count. This knowledge can be useful to population control, or serve in other studies. Keywords: pigeon, abundance, telemetry

Entender como comunidades são estruturadas a partir de um pool de espécies é uma questão central em Ecologia de Comunidades. Diversas abordagens foram propostas para estabelecer a ligação entre os padrões de estrutura de comunidades e os processos que os geram. As regras de assembleia e a abordagem filogenética em ecologia de comunidades são alguns exemplos. Entretanto, o que estas abordagens não levam em conta é o efeito de processos neutros na estruturação de comunidades. Há um consenso de que tanto nicho como neutralidade afetam a estrutura de comunidades e que se deve avaliar a importância relativa de cada um destes processos. A ideia desta tese foi usar modelos estatísticos para representar como processos neutros e de nicho geram padrões em comunidades. No Capítulo 2 propus uma abordagem baseada em modelos hierárquicos através da qual é possível expressar processos neutros e de nicho. A partir disso, foi possível representar hipóteses em que apenas processos neutros afetam a estrutura da comunidade, apenas processos de nicho ou diferentes combinações entre ambos. Usando seleção de modelos, identifiquei qual a combinação de processos melhor explica as abundâncias observadas das espécies. Com isso, mostrei que as comunidades de samambaias em gradientes altitudinais na Serra do Mar no Paraná, Brasil são estruturadas por uma mistura de filtro ambiental, deriva ecológica e limitação de dispersão. O filtro ambiental define as abundâncias das espécies selecionando as melhores estratégias ecológicas das espécies dependendo da altitude. A variação de abundância entre as espécies que compartilham as mesmas estratégias ecológicas é explicada em parte por deriva ecológica e limitação de dispersão e, em parte, por filtro de habitat independente dos atributos das espécies incorporados no modelo. Com isso, delimitei como processos baseados em nicho e neutralidade afetam a abundância das espécies de samambaias ao longo de gradientes altitudinais. No Capítulo 3 usei um estudo de caso para explorar a ideia central da abordagem filogenética em ecologia de comunidades de que é possível inferir os processos que afetam as comunidades com base em padrões locais de estrutura filogenética. Usei a abordagem de modelos proposta no Capítulo 2 para simular comunidades geradas por processos puramente neutros, puramente de nicho e uma combinação hierárquica entre os dois. Encontrei que comunidades geradas apenas por processos de nicho geram estruturas filogenéticas aleatórias na maioria dos casos. A detecção de estruturas filogenéticas aleatórias foi ainda mais frequente nas comunidades geradas por processos puramente neutros e pela combinação de processos neutros e de nicho, não sendo possível a distinção entre estes dois cenários. Desse modo, o estudo de caso mostrou que estruturas filogenéticas não aleatórias são muito pouco plausíveis e que os processos neutros geram uma forte assinatura nos padrões de estrutura filogenética. Com a abordagem proposta nesta tese foi possível delimitar a influência de processos de nicho e neutralidade em comunidades e entender suas consequências em termos dos padrões por eles gerados. A tradução dos diferentes processos em modelos mistos mostrou-se uma ferramenta poderosa para quantificar padrões e construir explicações de como os processos operam juntos / Understanding how communities are assembled from a species pool is a central question in community ecology. Different approaches to link pattern and processes in community ecology were proposed. Some examples are assembly rules and the community phylogenetic approach. However, one aspect not accounted in those approaches is how neutral processes affect community patterns. There is a consensus that both niche and neutral processes affect community assembly and that the goal should be assess the relative importance of each process. The general idea if this thesis was to use statistical models to represent how niche and neutral generate community patterns. In Chapter 3, I proposed a framework based on hierarchical models to express niche and neutral processes. I used this approach to represent hypothesis in which only niche processes affect community structure, only neutral processes or a hierarchical combination of both explains species abundance. By using model selection, I identifyied which combination of processes better predicts observed abundances on local communities. I showed that fern communities across altitudinal gradients at Serra do Mar in Paraná, Brazil are structured by a mixture of environmental filtering, ecological drift and limited dispersal. Environmental filtering defines species abundance, selecting the best ecological strategies of species depending on altitude. Variation on species abundance sharing the same ecological strategies is explained in part by drift and limited dispersal, and in part by habitat filtering independent of species traits considered in the models. Hence, I refined how niche and neutral processes affect fern abundance on altitudinal gradients. In Chapter 3, I used a case study to explore the idea from community phylogenetics of inferring processes affecting communities based on patterns of phylogenetic structure. I used the modeling framework from Chapter 3 to simulate communities built by niche, neutral and combination of both processes. I found that communities based on niche processes are likely to generate a random phylogenetic structure. The detection of random phylogenetic strucure was even more common on communities built solely by neutral processes and combination of both niche and neutral processes. Therefore, the case study showed that a non random phylogenetic strucure is unlikely and that neutral processes strongly affect the outcome of phylogenetic patterns. Based on the framework proposed on this thesis it is possible to delimit the influence of niche and neutral processes on community assembly and to understand what are the consequences in terms of community patterns. Translating different processes into mixed models can be a powerful tool to quantify patterns and built explanations on how the processes operate together