Active nematic elastomers are a class of active materials that possess the elasticity of a rubber, and the orientational symmetry of a liquid crystal. Their constituent elements are typically elongated, cross-linked and active. The cross-linking of the elements leads to an elasticity that prevents the material to ow like a liquid. These elements are active in a sense that they continuously consume and dissipate energy, creating a state that is far-from-equilibrium. Active nematic elastomers may be a good physical model for biological systems such as the metaphase spindle, a complex biological machine that is made of an integrated assembly of microtubules and molecular motors. These motors not only cross-link the microtubules, but also actively slide them against each other, creating a highly dynamic, non-equilibrium state. The metaphase spindle, like other non-equilibrium structures in biology, has important functions to perform. During mitosis, the spindle is responsible for (1) capturing the sister chromatids, (2) bringing all the sister chromatids to the equator of the mother cell, and (3) segregating the daughter chromosome to the opposite poles of the cell. Thus, a fundamental challenge to biological physics is to understand the complex dynamics of the spindle, and similar systems, using the tools of non-equilibrium statistical mechanics. In this Thesis, we develop and explore a phenomenological model for an active nematic elastomer. We formulate the dynamics of this phenomenological model by incorporating the contribution of the active elements to the standard formulation of the hydrodynamic equations of a passive system. In a coarse-grained picture, the activity is taken into account as an extra active stress, proportional to the alignment tensor, added to the momentum equation of an otherwise passive nematic elastomer. Having obtained the equations of motion of an active nematic elastomer, we then investigate the response of the system to an external field by means of examining the structure and the stability of the modes. An active nematic elastomer has eight modes, in which six modes are propagating and two modes are massive. Out of the six propagating modes, two modes are in the longitudinal direction, linked to the density waves, and the other four modes are in the transverse direction, linked to the shear waves. The nature of these propagating modes transitions from dissipative and oscillatory, and vice versa, depending on the length scales. In particular, their stability is largely determined in the hydrodynamic limit, by a competition between the stabilizing effect of the elasticity and the destabilizing effect of the activity. In fact, the activity renormalizes the elastic coefficients down to even a negative value in some cases and thus, rendering the system linearly unstable. This is in contrast to the well-known instability of an active nematic liquid crystal, which is always linearly unstable. We then map out and discuss the stability phase diagram of the active nematic elastomer. Next, we compute and study various equal-time correlation functions of an active nematic elastomer, assuming that the noise spectra are thermal in origin. We find that they can be conveniently arranged into two terms. The first term has the exact mathematical structure of the equal-time correlation functions of a passive nematic elastomer, albeit with certain coefficients renormalized by activity. The second term, which is proportional to the activity, represents the non-equilibrium nature of an active nematic elastomer, and manifestly breaks the Fluctuation-Dissipation Theorem. We also find that (1) the displacement-displacement correlation function decays inversely with the square of the wave number for both the compressible and incompressible nematic elastomer, similar to that of a passive nematic elastomer, with elastic coefficients renormalized by the activity. (2) The density-density correlation function approaches a constant at the long wave-length limit, since the conservation of mass links the density to the rate of changes of the displacement in the longitudinal direction. (3) The director-displacement correlation function is purely imaginary, and thus the director is locked to the displacement with a (π/2) phase-shift. (3) The director-director correlation function approaches a constant value in the long-wavelength limit, instead of decaying inversely with the square of the wave number, like it would for a liquid crystal. This is because of the massive mode stems from the coupling energy, and it indicates that director in the large length scale is locked to a specific angle. These theoretical results are in qualitative agreement with the experimental measurements of the spindle. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2019. / FAU Electronic Theses and Dissertations Collection

In this thesis we studied theoretically and numerically dynamics, order and fluctuations in two dimensional active matter with specific reference to the nematic phase in collections of self-driven particles.The aim is to study the ways in which a nonequilibrium steady state with nematic order differs from a thermal equilibrium system of the same spatial symmetry. The models we study are closely related to “flocking”[1], as well as to equations written down to describe the interaction of molecular motors and filaments in a living cell[2,3] and granular nematics [4]. We look at (i) orientational and density fluctuations in the ordered phase, (ii) the way in which density fluctuations evolve in a nematic background, and finally (iii) the coarsening of nematic order and the density field starting from a statistically homogeneous and isotropic initial state. Our work establishes several striking differences between active nematics and their thermal equilibrium counterparts. We studied two-dimensional nonequilibrium active nematics. Two-dimensional nonequilibrium nematic steady states, as found in agitated granular-rod monolayers or films of orientable amoeboid cells, were predicted [5] to have giant number fluctuations, with the standard deviation proportional to the mean. We studied this problem more closely, asking in particular whether the active nematic steady state is intrinsically phase-separated. Our work has close analogy to the work of Das and Barma[6] on particles sliding downhill on fluctuating surfaces, so we looked at a model in which particles were advected passively by the broken-symmetry modes of a nematic, via a rule proposed in [5]. We found that an initially homogeneous distribution of particles on a well-ordered nematic background clumped spontaneously, with domains growing as t1/2, and an apparently finite phase-separation order parameter in the limit of large system size. The density correlation function shows a cusp, indicating that Porod’s Law does not hold here and that the phase-separation is fluctuation-dominated[7]. Dynamics of active particles can be implemented either through microscopic rules as in[8,9]or in a long-wavelength phenomenological approach as in[5]It is important to understand how the two methods are related. The purely phenomenological approach introduces the simplest possible (and generally additive)noise consistent with conservation laws and symmetries. Deriving the long-wavelength equation by explicit coarse-graining of the microscopic rule will in general give additive and multiplicative noise terms, as seen in e.g., in [10]. We carry out such a derivation and obtain coupled fluctuating hydrodynamic equations for the orientational order parameter (polar as well as apolar) and density fields. The nonequilibrium “curvature-induced” current term postulated on symmetry grounds in[5]emerges naturally from this approach. In addition, we find a multiplicative contribution to the noise whose presence should be of importance during coarsening[11]. We studied nonequilibrium phenomena in detail by solving stochastic partial differential equations for apolar objects as obtained from microscopic rules in[8]. As a result of “curvature-induced” currents, the growth of nematic order from an initially isotropic, homogeneous state is shown to be accompanied by a remarkable clumping of the number density around topological defects. The consequent coarsening of both density and nematic order are characterised by cusps in the short-distance behaviour of the correlation functions, a breakdown of Porod’s Law. We identify the origins of this breakdown; in particular, the nature of the noise terms in the equations of motion is shown to play a key role[12]. Lastly we studied an active nematic steady-state, in two space dimensions, keeping track of only the orientational order parameter, and not the density. We apply the Dynamic Renormalization Group to the equations of motion of the order parameter. Our aim is to check whether certain characteristic nonlinearities entering these equations lead to singular renormalizations of the director stiffness coefficients, which would stabilize true long-range order in a two-dimensional active nematic, unlike in its thermal equilibrium counterpart. The nonlinearities are related to those in[13]but free of a constraint that applies at thermal equilibrium. We explore, in particular, the intriguing but ultimately deceptive similarity between a limiting case of our model and the fluctuating Burgers/KPZequation. By contrast with that case, we find that the nonlinearities are marginally irrelevant. This implies in particular that 2-dactive nematics too have only quasi-long-range order[14].