Doctor of Philosophy(PhD), / Airborne fungi are ubiquitous in the environment and human exposure is inevitable. Such fungi differ greatly in their taxonomic, physical, ecological and pathogenic characteristics. Currently, 69 000 species have been taxonomically classified and more than 80 of these are recognised to be aeroallergen sources. Many strategies have evolved to sample, identify and interpret fungal exposure to these species, however no strategy serves all purposes as exposure is a complex and dynamic process confounded by spatial, temporal and geographic variations in airborne counts, in addition to the inadequacies of the immunodiagnostic techniques available. To date, the interpretation of personal exposure and sensitisation to fungal allergens has been restricted to a few select species and the contribution of other genera, airborne hyphae and fragmented conidia to allergic disease are all poorly understood. The aim of the thesis was to utilize the Halogen Immunoassay (HIA) to diagnose fungal allergic sensitisation, to investigate the distribution and factors influencing allergens of fungi in the air and to understand what is actually inhaled in exposure settings. The novelty of the HIA derives from its unique ability to provide allergen sources that are actively secreted by the collected fungal spores and hyphae, which are bound to protein binding membranes (PBM) and then immunoprobed. In Chapter 2, the HIA was compared to the commercial in vitro Pharmacia UniCap assay (CAP) and the in vivo skin prick test (SPT), using 30 sera from subjects SPT positive to Aspergillus fumigatus and/or Alternaria alternata and 30 who were SPT negative to these fungi but sensitised to non-fungal allergens. Sera were analysed by CAP and the HIA against A. alternata, A. fumigatus, Cladosporium herbarum and Epicoccum purpurascens and compared statistically. Between 3% and 7% of SPT negative sera were identified to have specific IgE towards A. fumigatus and A. iv alternata, respectively. For the SPT positive sera, significant associations were found between the HIA and CAP scores for all fungal species tested (P<0.0001). Correlations between the HIA and SPT however, were weakly correlated for A. alternata (rs = 0.44, P<0.05) but not for A. fumigatus. In Chapter 3, personal exposure to indoor fungal aerosols was examined using the HIA to identify the fungal components that people were allergic to. Personal air sampling pumps (PASs) collected airborne fungal propagules onto PBMs for 2.5 hours indoors (n=21). Collected fungi were incubated overnight in a humid chamber to promote the germination of conidia. The membranes were then immunostained with pooled human Alternaria species-positive sera. All air samples contained fungal hyphae that expressed soluble allergens and were significantly higher in concentration than counts of conidia of individual well-characterised allergenic genera. Approximately 25% of all hyphae expressed detectable allergen compared to non-stained hyphae (P<0.05) and the resultant localisation of immunostaining was heterogeneous among hyphae. Fungal conidia of ten genera that were previously uncharacterised as allergen sources accounted for 8% of the total conidia that demonstrated IgE binding. In Chapter 4, the number and identity of fungi inhaled by 34 adults in an outdoor community setting was measured over 2 hour periods by people wearing Intra-nasal air samplers (INASs) and compared to fungal counts made with a Burkard spore trap and filter air samplers worn on the lapel. Using INAS, the most prevalent fungi inhaled belonged to soil borne spores of Alternaria, Arthrinium, Bipolaris, Cladosporium, Curvularia, Epicoccum, Exserohilum, Fusarium, Pithomyces, Spegazzinia, Tetraploa and Xylariaceae species, in addition to hyphal fragments. These results showed that inhaled exposure in most people varied in a 2-fold range with 10-fold outliers. In addition, the INAS and personal air filters agreed more with each other than with Burkard spore trap counts. The analysis was further confounded by different sampling efficiencies, locations of devices and ability to visualise and count fungal propagules. In Chapter 5, a double immunostaining technique based on the HIA was developed and applied to the conidia, hyphae and fungal fragments of A. alternata, A. fumigatus and Penicillium chrysogenum to discriminate between sources of allergens, v using IgE and to identify the fungi, using a fungal-specific antibody. The localisation of immunostaining was heterogeneous between both conidia and the state of germination with greater concentrations of double immunostaining detected following germination for each fungal species (P<0.0001). Fragmented A. alternata hyphae and morphologically indiscernible fragments could be identified for the first time using this technique. In Chapter 6, the factors affecting the release of allergen from the spores of eleven different species were studied. For nine of eleven species, between 5.7% and 92% of spores released allergen before germination. Ungerminated spores of P. chrysogenum and Trichoderma viride did not release detectable allergen. After germination, all spores that germinated eluted allergen from their hyphae. Upon germination there was a significant increase in the percentage of spores eluting detectable allergen (P<0.0001) and the localisation of allergen along the hyphae varied between species. Increased elution of allergen post germination might be a common feature of many species of allergenic fungi following inhalation. Additionally, Chapter 6 explored the extent to which inhaled spores or hyphae germinate after deposition in the nasal cavity and thus cause exposure to allergens. Twenty subjects had their noses lavaged at three separate intervals, (1) at the beginning of the experiment, (2) after one hour indoors and (3) after one hour outdoors. The recovery of spores and hyphal fragments from the nasal cavity varied between individuals and was significantly greater after outdoor exposures. Germinated fungal spores were recovered often in high concentrations for Aspergillus-Penicillium species, however the proportion between ungerminated and germinated spores were much lower for other genera recovered. Conclusions: Our analysis of cultured and wild-type fungi presents a new paradigm of natural fungal exposure, which in addition to commonly recognized species, implicates airborne hyphae, fragmented conidia and the conidia of a much more diverse range of genera as airborne allergens. Exposure is heterogeneous between individuals in the same geographic locality and the spectrum of fungal genera inhaled differs with the method of analysis. Many of the spores inhaled are likely to be allergenic, however upon germination there is an increased elution of allergen and this might be a common vi feature of many fungal species following inhalation. This project also provides novel techniques to diagnose fungal allergy by immunostaining wild-type fungi to which a patient is exposed with the patient’s own serum. Such an immunoassay combines environmental with serological monitoring on a patient specific basis and potentially avoids many problems associated with extract variability, based on the performance of current diagnostic techniques for fungal allergy.

Thesis (DR. P.H.)--University of Michigan.

Thesis (DR. P.H.)--University of Michigan.

Thesis (Ph. D.)--West Virginia University, 2005. / Title from document title page. Document formatted into pages; contains xiv, 256 p. : ill. (some col.). Includes abstract. Includes bibliographical references (p. 118-122).

Campylobacter is a foodborne pathogen commonly found in live poultry and raw poultry products. Identifying areas of contamination or modes of transmission during commercial processing can lead to strategies to reduce the level of Campylobacter on finished products. Monitoring levels of airborne Campylobacter may be useful for identifying the presence or relative concentration of the pathogen in a processing plant environment. In this study, air sampling was used to detect and quantify Campylobacter in a commercial chicken processing plant by location within the plant and collection time during the day. Air was sampled from evisceration and post-chill areas in a poultry processing plant on four days and at 4 hour intervals onto Campy-Cefex agar plates or gelatin filters that were subsequently transferred to Campy-Cefex agar plates. Additionally, pre-evisceration and post-chill carcass rinses were analyzed quantitatively for Campylobacter. The mean level of airborne Campylobacter was 5 CFU/1000L of air sampled (10% samples positive) in comparison with 413 CFU/mL from carcass rinses (70% samples positive). Higher concentrations were found in carcass rinse samples from pre-evisceration. Airborne Campylobacter was detected from the evisceration area more frequently than from the post-chill carcass area of the plant (P < 0.05). This study shows that airborne Campylobacter can be quantified with a selective agar and with gelatin filter collection. Further research is needed to prove the utility of airborne detection of Campylobacter for estimating the relative contamination level of live poultry flocks and the processing plant environment and the potential for cross-contamination. / Master of Science in Life Sciences

Campylobacter and Salmonella are foodborne pathogens commonly associated with raw poultry. Although there has been much research done on isolating these pathogens from poultry production environments using cloacal swabs, fecal samples, intestinal tract contents and dissection, research involving environmental sampling has been limited. New and/or improved environmental sampling methods may provide an easy, convenient, and less time-consuming way to collect samples. Coupling these sampling methods with PCR may provide a relatively simple, rapid, and robust means of testing for foodborne pathogens in a chicken house or flock prior to slaughter. Air, boot and sponge samples were collected from three commercial chicken grow-out houses located in southwestern Virginia when flocks were three, four, and five weeks old. Air samples were collected onto gelatin filters. Fecal/litter samples were collected from disposable booties worn over investigator's protective shoe coverings. Pre-moistened sponges were used to sample house feed pans and water dispensers on drink lines. A PCR method was used to qualitatively detect Campylobacter jejuni and Salmonella spp. Campylobacter jejuni was detected at each farm (house), across all three ages (3, 4, and 5 weeks), and from each sample type. Salmonella was not detected in any of the environmental samples. For all 270 samples, 41% (110/270) were positive for Campylobacter. Collectively, 28% (25/90) of air, 44% (40/90) of sponge, and 50% (45/90) of bootie samples were positive for Campylobacter. The methods used in this study are non-invasive to live animals, relatively rapid and specific, and could enable poultry processing facilities to coordinate scheduled processing of flocks with lower pathogen incidence, as a way to reduce post-slaughter pathogen transmission. / Master of Science

Diploma thesis deals with the assessment of volatile organic compounds contamination of selected working environment in Gumotex, joint stock company using passive sampling. The theoretical part contains description of these compounds and their reactions in the atmosphere, practical use of these substances and their effect on human health. The possibilities of passive sampling and determination of these substances are described as well. The experimental part contains analysis of volatile organic compounds at two selected workplaces in Gumotex, joint stock company using passive samplers Radiello. Final determination by gas chromatography with flame ionization detector was preceded by adsorption surface extraction of sampler with carbon disulfide. In conclusion, obtained data are compared with the permissible exposure limits and maximum allowable concentrations, which are defined by the National Health Institute.

<p>This thesis covers sampling and analytical procedures for isocyanates (R-NCO) and amines (R-NH₂), two kinds of chemicals frequently used in association with the polymeric material polyurethane (PUR). Exposure to isocyanates may result in respiratory disorders and dermal sensitisation, and they are one of the main causes of occupational asthma. Several of the aromatic diamines associated with PUR production are classified as suspected carcinogens. Hence, the presence of these chemicals in different exposure situations must be monitored. </p><p>In the context of determining isocyanates in air, the methodologies included derivatisation with the reagent di-<i>n</i>-butylamine (DBA) upon collection and subsequent determination using liquid chromatography (LC) and mass spectrometric detection (MS). A user-friendly solvent-free sampler for collection of airborne isocyanates was developed as an alternative to a more cumbersome impinger-filter sampling technique. The combination of the DBA reagent together with MS detection techniques revealed several new exposure situations for isocyanates, such as isocyanic acid during thermal degradation of PUR and urea-based resins. Further, a method for characterising isocyanates in technical products used in the production of PUR was developed. This enabled determination of isocyanates in air for which pure analytical standards are missing. Tandem MS (MS/MS) determination of isocyanates in air below 10^-6 of the threshold limit values was achieved.</p><p>As for the determination of amines, the analytical methods included derivatisation into pentafluoropropionic amide or ethyl carbamate ester derivatives and subsequent MS analysis. Several amines in biological fluids, as markers of exposure for either the amines themselves or the corresponding isocyanates, were determined by LC-MS/MS at amol level. In aqueous extraction solutions of flexible PUR foam products, toluene diamine and related compounds were found. </p><p>In conclusion, this thesis demonstrates the usefulness of well characterised analytical procedures and techniques for determination of hazardous compounds. Without reliable and robust methodologies there is a risk that exposure levels will be underestimated or, even worse, that relevant compounds will be completely missed.</p>

Traditional occupational hygiene assessment of occupational exposures to organic gases and vapours rely on low flow (<200 ml/min) NIOSH sorbent tubes. This work investigates 3M charcoal filter media (JK50 and JK40, 3M, Inc.) for collection and analysis of organic vapours across 0.1-5 l/min. To enable this work, a custom exposure facility was constructed and validated within which organic analyte gas/vapour concentrations could be introduced at known concentrations while controlling environmental variables such as temperature and humidity and other variables. This facility enabled experiments designed to investigate collection and desorption efficiencies across a range of sample flow rates, temperature and humidity conditions for both NIOSH sorbent tubes (e.g. SKC tube) and 3M charcoal filter media. As a result of the investigations described in this thesis, the following conclusions are drawn. Performance of the 3M charcoal filter media for collection and desorption efficiencies for loading, storage time, humidity and breakthrough at low flow rates (<0.5 l/min) were found comparable to the SKC sorbent tube. It is concluded that 3M charcoal media (JK50 and JK40) are suitable for sampling and analyses of hydrocarbons at flow rates <0.5 l/min. The collection efficiencies of the 3M charcoal filter media were investigated at high flow rates (>0.5l/min) for the same parameters, i.e., loading, temperature and humidity. It is concluded that 3M charcoal filter media can be used with confidence in sampling and analysis of airborne hydrocarbons up to 5 l/min. The Wheeler-Jonas model was found to satisfactorily predict the adsorption kinetics of the 3M charcoal filter media at different loading values of hydrocarbons. It was therefore concluded that the model can be applied to determine the suitable amount of 3M charcoal filter media prior to sampling for a given loading.

Occupational exposure limits are generally decreasing and traditional samplers used for quantifying occupational exposures have numerous limitations: cost, disposability, detection of low concentrations, and some even fail to match international inhalable sampling conventions. A low cost, high-flow (10 L min-1) inhalable prototype sampler was developed from the 37-mm cassette and tested in previous studies. These studies called for additional field testing as an area and personal sampler. The sampler was paired with the IOM (2 L min-1), a traditional inhalable air sampler, and deployed in metal working facilities. The samplers were compared to determine whether the prototype matched the IOM and whether the new sampler could improve the sensitivity for detecting lower concentrations of metals. The following processes were sampled: welding, grinding, soldering, pouring, sawing, tending and shooting guns. A total of 21 out of 28 paired samples had detectable metals out of 15 possible metals. There were seven out of eight personal samples and 14 out of 20 area samples with detectable metal concentrations. The average sample time was seven hours, but ranged from 4.2 – 8.3 hours. The most common metals that were detected on 10 or more samples were iron, manganese, zinc, copper, and lead. Metal concentrations collected by the two samplers were not statistically different for the aggregate metal concentrations collected (p = 0.67), metals collected by sample type, personal or area (p = 0.52) or by particle “sizes,” small or large (p = 0.40), collected from the processes. While the samplers were not statistically different, linear regression equations to assess the sampler relationships showed that there were significant differences between the two samplers. Over the total metal concentrations collected, the prototype collected about 71% of what the IOM collected. By sample type, the prototype performed better during area sampling as opposed to personal sampling and by particle size, the prototype performed better in the collection of smaller, heat generated particles, as opposed to larger, mechanically generated particles. Though minor differences were found between concentrations detected on the prototype and IOM, it was determined that in general, these differences were negligible in their interpretation and comparison to occupational exposure limits. Plots also indicated that the prototype sampler performs well at sampling low concentrations of metals, however, only a small amount of metals were detected on the prototype that were not found on the IOM, therefore, the improvement of sensitivity was not assessed. High-flow sampling was hindered by the ability of air sampling pumps to maintain the required operation flow rate of 10 L min-1 for the duration of a work shift. Additional field studies are needed to determine whether the sensitivity for detecting lower concentrations of metals can be improved.