Introdução - A puberdade precoce verdadeira ou dependente de GnRH apresenta importante morbidade: a baixa estatura, conseqüência da rápida progressão da idade óssea, além das seqüelas psico-emocionais do desenvolvimento sexual secundário precoce. Daí a importância da realização de um diagnóstico precoce e preciso, a fim de que a terapêutica adequada seja instituída o quanto antes. O uso do análogo do GnRH (aGnRH) em teste diagnóstico vem sendo utilizado com este objetivo. Neste estudo avaliou-se os valores de corte para o diagnóstico de puberdade precoce verdadeira, usando-se o teste do aGnRH. Material e métodos - Estudo prospectivo, com 44 meninas, com desenvolvimento dos caracteres sexuais secundários antes dos 8 anos de idade, atendidas no Ambulatório de Ginecologia Infanto-Puberal do Hospital das Clínicas da Faculdade de Medicina de Ribeirão Preto da Universidade de São Paulo. Realizou-se, em todos os casos, o teste do aGnRH, que consistiu na coleta de amostra sanguínea basal para dosagem de FSH e LH, seguida da aplicação subcutânea de 500µg de acetato de leuprolida (Lupron®). Novas amostras sanguíneas foram realizadas após 3 horas, para dosagem de FSH e LH, e após 24 horas da aplicação, para dosagem de estradiol Compararam-se os níveis de LH e FSH basais, de 3 horas e a relação LH/FSH obtida, além do estradiol de 24h, com a evolução clínica das pacientes. Este foi o padrão ouro utilizado para análise do teste, sendo que, após 6 meses, as pacientes foram divididas em 2 grupos: puberdade progressiva (puberdade precoce verdadeira) e não-progressiva. Para análise estatística, utilizou-se curvas ROC, estabelecendo-se sensibilidade, especificidade e melhor nível de corte para o diagnóstico de puberdade precoce verdadeira, para os diferentes critérios analisados. Além disso, avaliou-se a concordância entre os diversos tipos de análise do teste, através do coeficiente kappa. Resultados - O LH de 3 horas apresentou valor de corte > 4,5 mUI/mL, sensibilidade 59,1% e especificidade 86,4%, com área sobre a curva de 0,723. O valor de kappa foi de 0,45, com concordância de 0,73. O estradiol de 24 horas apresentou valor de corte > 40,6 pg/mL, sensibilidade 70% e especificidade 73,7%, com área sobre a curva de 0,703. O valor de kappa foi de 0,436, com concordância de 0,718. Dentre todos os critérios analisados, o melhor deles foi a relação LH/FSH de 3 horas, com valor de corte > 0,14, sensibilidade 72,7% e especificidade 77,3%, com área sobre a curva de 0,771. O valor de kappa foi de 0,5, com concordância de 0,75. Conclusões - Em nossa avaliação, a relação LH/FSH de 3 horas foi superior ao valor de LH de 3 horas ou estradiol de 24 horas, que haviam sidos os melhores critérios diagnósticos no trabalho pioneiro na utilização deste teste. / Introduction - True or GnRH-dependent precocious puberty involves important morbidity such as short stature due to the rapid progression of bone age, as well as psycho-emotional sequels of precocious secondary sexual development. Thus, it is important to make an early and precise diagnosis so that appropriate treatment can be instituted as early as possible. The GnRH analogue (aGnRH) in the diagnostic test has been used for this purpose. In the present study, the sensitivity and specificity of different laboratory criteria for the diagnosis of true precocious puberty were compared using the aGnRH test. Material and methods - This was a prospective study conducted on 44 girls with the development of secondary sexual traits before 8 years of age attended at the Childhood-Pubertal Gynecology Outpatient Clinic of the University Hospital, Faculty of Medicine of Ribeirão Preto, University of São Paulo. The aGnRH test was performed in all cases, consisting of collection of a basal blood sample for the determination of FSH and LH, followed by subcutaneous application of 500 µg leuprolide acetate (Lupron®). New blood samples were obtained after 3 hours, for the determination of FSH and LH, and after 24hours of application, for determination of estradiol. Basal LH and FSH levels and levels after 3 hours, the LH/FSH ratio obtained 3 hours after the administration of 500 µg Lupron®, and 24 hour estradiol levels were compared with the clinical course of the patients. This was the gold standard used for the analysis of the test and after 6 months the patients were divided into 2 groups: progressive puberty (true precocious puberty) and non-progressive puberty. ROC curves were used for statistical analysis, with the determination of the sensitivity, specificity and best cut-off value for the diagnosis of true precocious puberty of the different criteria analyzed. In addition, the agreement of the various types of test analysis was evaluated using the kappa coefficient. Results - Three hour LH presented a cut-off value of > 4.5 mIU/mL, 59.1% sensitivity and 86.4% specificity, with an area under the curve of 0.723. The kappa value was 0.45, with 0.73 agreement. Twenty-four hour estradiol presented a cut-off value of > 40.6 pg/mL, 70% sensitivity and 73.7% specificity, with an area under the curve of 0.703. The kappa value was 0.436, with 0.718 agreement. The best of all criteria used was the 3 hour LH/FSH ratio, with a cut-off value of > 0.14, 72.7% sensitivity and 77.3% specificity, with an area under the curve of 0.771. The kappa value was 0.5, with 0.75 agreement. Conclusions - In the present evaluation, the 3 hour LH/FSH ratio was superior to the 3 hour LH value and the 24 hour estradiol value, which had been the best diagnostic criteria in the pioneering study using this test.

Thesis advisor: Michael Russell / For more than a half century surveys and questionnaires with Likert-scaled items have been used extensively by researchers in schools to draw inferences about students; however, to date there has not been a single study that has examined whether alternative item response types on a survey might lead to different results than those obtained with Likert scales in a K-12 setting. This lack of direct comparisons leaves the best method of framing response options in educational survey research unclear. In this study, 4th through 12th grade public school students were administered two versions of the same survey online: one with Likert-scaled response options and the other with visual analogue-scaled response options. A randomized, fixed-effect, between-subjects experimental design was implemented to investigate whether the survey with visual analogue-scaled items yielded results comparable to the survey with Likert-scaled items based on the following four methods and indices: 1) factor structure; 2) internal consistency and test-retest reliability; 3) survey summated scores; and 4) main, interaction, and simple effects. Results of the first three indices suggested that both the Likert scale and visual analogue scale produced similar factor structures, were equally reliable, and yielded summated scores that were not significantly different across all three school levels (elementary, middle, and high school). Results of the factorial ANOVA suggested that only the main effect of school level was statistically significant but that there was no significant interaction between item response type and school level. Results of the post-survey questionnaires suggested that students at all school levels preferred answering questions on the survey with the VAS compared to the LS nearly three to one. / Thesis (PhD) — Boston College, 2008. / Submitted to: Boston College. Lynch School of Education. / Discipline: Educational Research, Measurement, and Evaluation.

Development of enzymatic labelling methods has been driven by the importance of studying molecular structures and interactions to comprehend cellular processes. Methyltransferases (MTases), which regulate genetic expression by transferring a methyl group from the cofactor S-adenosyl-L-methionine (SAM) to DNA, histones and various proteins, have been shown to accept SAM analogues with an alternative alkyl group on the sulfonium centre. These alkyl groups can be transferred to the substrate, and with a further reaction can be selectively functionalized. Thus, MTases together with SAM analogues have emerged as novel labelling tools. The project aims to use MTases to obtain an orthogonal system that can selectively use a SAM cofactor analogue to transfer functional chains to proteins with a specific motif. To achieve selectivity of the system, the SAM analogue cofactor was modified on the ribose ring; to obtain a new transferase activity of the system, the transferable methyl on the sulfonium centre was changed to a different substituent. SAM analogues were produced enzymatically with hMAT2A by using 3'-deoxy-ATP and methionine or ethionine. Mutants of SET8 and novel substrates were designed to have modifications at residues in the active site, within the vicinity of the ribose ring of SAM, and were assessed for selective activity with the new analogue cofactor. The results showed that the new cofactor 3'-deoxy-S-adenosyl-L-methionine (3'dSAM) was efficient in the mono-methylation of the substrate peptide RFRKVL, and that the mutant SET8 C270V exhibited over 13 fold MTase activity in presence of 3'dSAM and the RFRKVL substrate, in comparison with the activity with the WT sequence RHRKVL and the SAM cofactor. In addition, glutathione S-transferase (GST) was used as a model protein to express the motif RFRKVL, to transform it into a potential substrate for SET8. Assessment of the MTase activity of SET8, 3'dSAM and the novel GST substrate indicated mono-methylation of the substrate. Moreover, the motif showed no interference with GST native activity. Based on the observations, a new enzymatic system shows higher selectivity with a new analogue cofactor over SAM to effectively methylate proteins expressing the consensus RFRKVL. Work on substrates, enzymes and cofactors should continue to obtain a functional-chain transferase activity of the enzymatic system.

Deep subsurface evaporites are common terrestrial deep subsurface environments found globally. These deposits are known to host communities of halophilic organisms, some of which have been suggested to be millions of years old. The discovery of evaporite minerals on Mars has led to these environments becoming of interest to astrobiology, particularly because the subsurface of Mars represents the best chance of finding more clement conditions conducive to life. Despite this interest, deep subsurface evaporites remain poorly understood and we have little insight into how different salts shape the Earth's biosphere, much of which is underground. This thesis addresses several knowledge gaps present in the literature by sampling a selection of brine seeps and rock salt samples taken from Boulby Potash Mine, UK. The origin and evolution of the brines is determined with geochemical techniques, showing the majority to have been sourced from an aquifer above where they were intersected in the mine. These brines appear to have taken a variety of pathways through the subsurface leading to the presence of a range of different ions dissolved within them. The majority are Na/Cl dominated, whilst one is K/Cl dominated. One brine appears to have a different origin and probably interacted with dolomite becoming very concentrated in Mg. This variety in brine origins and migration pathways has impacted the habitability of the brines. Physicochemical measurements for chaotropicity, water activity and ionic strength, combined with culturing experiments suggest brines from the Sherwood Sandstone were habitable, but the brine from a distinct unknown source was uninhabitable. DNA was successfully extracted from three of the habitable brines and their metagenomes sequenced. These revealed communities largely functionally and phylogenetically similar to surface near saturation brines, indicating that the structure of the communities present in saturated Na/Cl brines are controlled almost exclusively by these ions rather than any other environmental difference between the surface and subsurface. Organisms were also taken from these brines and culturing experiments carried out to determine if any carbon sources were present in ancient salt that might promote growth in the absence of other carbon sources. Controls showed that the geochemical changes to the growth media induced by solving the salts, particularly sylvinite, were responsible for the increases in growth observed, indicating certain salt minerals effectively fertilise the growth of halophiles. Culturing on hydrocarbon seeps collected in the mine suggested they may provide a carbon source periodically to some organisms within the deposit. Work was done to show the presence of dissimilatory sulphate and iron reducing halophiles. Overall this significantly advances our understanding of how salts shape the Earth's biosphere, particularly its deep subsurface component, and what functional capabilities life has to persist in these environments. This work provides a new window on the potential habitability of deep subsurface extraterrestrial environments and how we might go about investigating these environments for habitable conditions.

<p>5’-Nucleotidases (5’NTs) are catabolic enzymes of the nucleotide metabolism. They catalyze dephosphorylation of deoxyribo- and ribonucleoside monophosphates and constitute an important control point in the regulation of intracellular nucleotide pools for the maintenance of correct DNA and RNA synthesis.</p><p>By removing the alfa-phosphate group from a nucleotide, the 5’NTs release the nucleoside to pass the plasma membrane by facilitated diffusion. Depending on the cellular need for nucleotides, the nucleosides can either exit the cell for reuse elsewhere or be imported and subsequently phosphorylated by nucleoside and nucleotide kinases.</p><p>The knowledge of how nucleotides are metabolized has been used for rational design of nucleoside analogues that are used in treatment of cancer and viral diseases. These drugs are phosphorylated within the cell to become active. Their dephosphorylation by 5’NTs might be one of the mechanisms behind the resistance experienced by patients towards such drugs.</p><p>This thesis describes structure-function studies on four of the seven known human 5’-NTs. The focus of the work is on the substrate specificity and regulation of these enzymes. Inactive variants of the mitochondrial and cytosolic deoxynucleotidases and the cytosolic 5’-nucleotidase II were used to characterize the structural basis for their substrate specificity in high detail.</p><p>Based on structures of the apoprotein and activator/activator+substrate complexes of cytosolic 5’-nucleotidase II, a mechanism for the allosteric activation of this enzyme was presented. In this mechanism, the activator induces a conformational change that involves conserved residues of the active site. The conformational change drastically increases the enzyme affinity for the phosphate moiety of the substrate.</p>

5’-Nucleotidases (5’NTs) are catabolic enzymes of the nucleotide metabolism. They catalyze dephosphorylation of deoxyribo- and ribonucleoside monophosphates and constitute an important control point in the regulation of intracellular nucleotide pools for the maintenance of correct DNA and RNA synthesis. By removing the alfa-phosphate group from a nucleotide, the 5’NTs release the nucleoside to pass the plasma membrane by facilitated diffusion. Depending on the cellular need for nucleotides, the nucleosides can either exit the cell for reuse elsewhere or be imported and subsequently phosphorylated by nucleoside and nucleotide kinases. The knowledge of how nucleotides are metabolized has been used for rational design of nucleoside analogues that are used in treatment of cancer and viral diseases. These drugs are phosphorylated within the cell to become active. Their dephosphorylation by 5’NTs might be one of the mechanisms behind the resistance experienced by patients towards such drugs. This thesis describes structure-function studies on four of the seven known human 5’-NTs. The focus of the work is on the substrate specificity and regulation of these enzymes. Inactive variants of the mitochondrial and cytosolic deoxynucleotidases and the cytosolic 5’-nucleotidase II were used to characterize the structural basis for their substrate specificity in high detail. Based on structures of the apoprotein and activator/activator+substrate complexes of cytosolic 5’-nucleotidase II, a mechanism for the allosteric activation of this enzyme was presented. In this mechanism, the activator induces a conformational change that involves conserved residues of the active site. The conformational change drastically increases the enzyme affinity for the phosphate moiety of the substrate.

This thesis discusses the effects of basal friction and basement configuration on the deformation of the fold-and-thrust belts in convergent zones. A series of analogue models were conducted with adjacent different basal configuration and frictional properties to observe and gain a better understanding of these basal effects and their interactions. The results from these side-by-side systematic models demonstrate that the kinematics and geometry of the deformation wedges are strongly influenced by the mechanical and geometrical basal effects. In these experiments, high accuracy laser scanner and digital camera were used to record the evolution of the surface topography of the deformed sand packs. Comparison between models with different basal friction shows that the basal friction plays a significant role on the propagation and topography of the deformation structures in aspects such as wedge height, taper angle, number of imbricates and deformation front. The models with a basal viscous material, which acts as low friction substrate, illustrates that the propagation of deformation above viscous material is faster and further than above the adjacent mechanically different frictional decollement. In the experiments with a moving plate under the part of the sand pack, the velocity discontinuity was introduced by either rigid, i.e. frontal edge of the metal plate, or deformable like distal end of the viscous materials. The results of these kinds of experiments, applicable to for example basement faults, salt decollements and tectonic underplating simulations, illustrate that the deformation localizes and develops continuously above the velocity discontinuities. Besides, the different rate and distance of the propagation of deformation fronts caused by different substrate distribution between the adjacent zones also lead to the formation of transpressive zones at the boundary of these adjacent domains with different basal friction/configurations.

An investigation was conducted to determine the contribution of the gastrointestinal microbiota to variation in bioefficacy of methionine sources and the interrelationship between intestinal microbiota and cereal grain type with respect to gastrointestinal physiology. Apparent gastrointestinal absorption of DL-methionine (MET) and 2-hydroxy-4-methylthiobutanoic acid (MHA-FA), post-weaning intestinal morphology, digestive physiology, mucin dynamics and digesta flow were studied in a series of experiments using conventional and gnotobiotic pigs. At 14 d of age, sow - reared conventional (CON) pigs and isolator - reared monoassociated gnotobiotic pigs (EF) were weaned to corn or wheat/barley based diets supplemented with MET or MHA-FA. At 24 d of age, after an overnight fast, pigs were fed experimental diet supplemented with 107 Bq of either 3H-L-MET or 3H-L-MHA-FA per kg of feed and chromic oxide (0.5% wt/wt). Pigs were killed 3 h after consuming the meal to collect digesta and tissue samples from the stomach and along the small intestinal (SI) length. Conventional pigs fed a wheat/barley-based diet had increased (P < 0.05) total aerobes, whereas supplementation with MHA-FA increased (P < 0.05) total aerobes and lactobacilli populations in proximal SI. Among the gnotobiotic pigs, 8 pigs (2 isolators) were monoassociated with a bacteria closely related to <i>Providencia</i> spp. and 16 pigs (4 isolators) were monoassociated with <i>Enterococcus faecium</i> (EF). Species of bacterial contaminant and diet composition did not affect residual MET or MHA-FA in digesta. Decreased (P < 0.05) apparent residual MET in digesta compared with MHA-FA in CON but not monoasscoiated pigs, along with significantly higher (P<0.05) MET associated radioactivity at 5% SI tissue suggested that microbial metabolism of MHA-FA increases its retention in small intestinal digesta and contributes in part to the lower bioefficacy of MHA-FA compared to MET. A comparison of CON and EF pigs showed that wheat/barley diets increased digesta viscosity (<i>P</i> < 0.01) and proliferating cell nuclear antigen (PCNA) expression (<i>P</i> < 0.001) and tended to decrease (<i>P</i> < 0.07) aminopeptidase N (APN) activity. Monoassociation decreased (<i>P</i> < 0.01) body weight, relative spleen weight, crypt depth, PCNA expression, caspase-3 activity, sucrase expression, total goblet cells in crypts and mucin gene expression and increased (<i>P</i> < 0.01) relative SI length, digesta viscosity, villus height, APN and sucrase activity. Interactive effects between cereal grain type and microbial status were observed only as trends (<i>P</i> < 0.1) for PCNA, Muc2, APN and sucrase suggesting these effects were mediated indirectly through microbial changes. Decreased % retained chromic oxide in digesta at all SI locations and no chromic oxide at 95% SI length in monoassociated pigs indicated slower small intestinal transit of digesta in monoassociated pigs. We successfully developed the chromic oxide microassay for estimating chromic oxide in 1/20th of original sample size (2.0 g). Results of this study indicate that microbial metabolism of MHA-FA contributes in part to the lower bioefficacy of MHA-FA compared to MET. Monoassociation had major effects on intestinal physiology whereas limited indirectly mediated effects of cereal type were observed suggesting no major influences of cereal grain type during the short early post-weaning phase.

Les analogues de nucléosides font partie de l'arsenal contre le cancer, principale cause de décès au pays. Ces dérivés synthétiques, qui empêchent la prolifération des cellules malignes via l'inhibition d'enzymes (ex. : kinases et polymérases) impliquées dans la réplication de l'ADN, possèdent une courte demi-vie in vivo. Notamment, les phosphorylases clivent facilement le lien N-glycosidique. Un autre obstacle que rencontrent les analogues est la compétition que leur livrent les nucléosides naturels. Le mémoire porte sur des améliorations à 2 niveaux: la synthèse d'analogues stabilisés et la synthèse d'inhibiteurs de la biosynthèse des nucléosides puriques. Pour la première partie, la préparation de composés ayant un méthylène entre les sous-unités furannose et base nucléique, appelés l'-homonucléosides, pourrait réduire l'instabilité métabolique. Aucune méthode stéréosélective n'existe pour préparer ces composés. La synthèse de l'-homocarbanucléosides a été amorcée, de façon stéréosélective, à partir du cycloadduit de Diels-Alder [4+2] endo issu du cyclopentadiène et de l'acrylate de méthyle. Ensuite, l'ozonolyse de l'alcène et la réduction in situ du dialdéhyde intermédiaire ont produit un diol, duquel un des hydroxyles a réagi par lactonisation sélective avec l'ester provenant du diénophile. L'autre hydroxyle (position 5') a été protégé sous forme d'éther silylé. Pour compléter la synthèse de l '-homocarbanucléosides, il fallait régénérer l'hydroxyle impliqué dans la lactone et l'activer pour faire le couplage avec une base nucléique. La lactone a donc été aminolysée mais il a été impossible d'isoler le mésylate dérivé de l'hydoxyamide obtenu. Alternativement, la lactone a été réduite en lactol, qui a été impliqué dans une réaction de Wittig, libérant ainsi l'alcool en position l'-homo, qui a été activé sous forme de sulfonate. Diverses tentatives de couplage entre cet intermédiaire et la thymine sont restées sans succès jusqu'à maintenant. Pour la deuxième partie du mémoire, la préparation d'inhibiteurs bifonctionnels de l'enzyme amidophosphoribosyltransférase (APRT), mimant à la fois le ribose et la glutamine, a été envisagée. La stéréochimie l,4-cis des dérivés tétrahydrofuranés serait assurée par une cycloaddition [4+2] impliquant un vinylphosphonate comme diénophile et le 3-méthoxyfurane comme diène. La préparation de ce dernier a été tentée de différentes manières. Deux méthodes connues de la littérature ont échoué. Une troisième méthode a été tentée, impliquant une cycloaddition [4+2] entre le furane et l'anhydride maléique, une éthérification suivie d'une rétrocycloaddition [4+2]. Après avoir rencontré de nombreuses difficultés, nous avons exploré la possibilité de synthétiser un intermédiaire requis pour les inhibiteurs, mais excluant le 3-méthoxyfurane. ______________________________________________________________________________ MOTS-CLÉS DE L’AUTEUR : Analogue de nucléosides, Nucléosides, L'-homonucléosides, Cycloaddition de Diels-Alder, Inhibiteurs bifonctionnels, Enzyme APRT, 3- méthoxyfurane.

Les recherches sur le cancer sont d'une grande nécessité étant donné l'étendue de la maladie et l'incapacité que nous avons à la traiter efficacement. En effet, dans les pays industrialisés, on estime que le cancer est la deuxième cause de mortalité. Une façon de combattre cette maladie est d'utiliser des agents qui pourraient entraver la prolifération des cellules infectées. À ce titre, les analogues de nucléosides font l'objet de recherches depuis les années 70. Présentement, les analogues de nucléosides sont largement utilisés à titre d'inhibiteur de la synthèse d'ADN dans les traitements contre le cancer et des infections virales. Cependant, la plupart possèdent la même faiblesse: leur rapide dégradation in vivo. En effet, le lien C-N glycosidique peut être facilement hydrolysé en condition acide ainsi que par l'action d'enzymes nucléosidases. Suivant l'hypothèse que l'ajout d'un méthylène entre le squelette ribosique et la base azotée produirait des analogues moins facilement dégradables, notre laboratoire développe une méthode synthétique vers ces 1'-homonucléosides. La stéréochimie 1',4'-cis, qui imite la configuration anomérique B normalement nécessaire pour l'activité biologique, est contrôlée par une réaction de Diels-Alder entre le furane et l'acrylate d'éthyle. Le cycloadduit formé subit ensuite un tandem de réactions d'ozonolyse et de réduction, fournissant une y-lactone, à partir de laquelle des transformations de groupes fonctionnels permettront l'ajout de diverses bases azotées. Subséquemment, les produits synthétisés seront testés pour leur activité anticancéreuse et antivirale. Jusqu'à maintenant deux principaux volets synthétiques ont été explorés afin de compléter la synthèse de 1'-homonucléosides. Le premier volet est la synthèse de 1'-homonucléosides substitués en position 2' a été tenté en protégeant la fonction alcool obtenue suite à la lactonisation, ensuite la lactone a été ouverte de façon à créer l'alcool en position 1'-homo. Cet alcool a ensuite été activé de différentes façons afin d'y tenter le couplage de la base azotée. Dans un autre volet, la démarche afin de construire des 1'-homonucléosides substitués en position 3' a été établie. L'alcool obtenu après lactonisation est directement activé en groupe partant (p-toluènesulfonate) afin d'y faire des couplages de bases azotées. Il semble que la réaction fonctionne avec un meilleur rendement par chauffage via micro-ondes. Il reste encore à améliorer les conditions afin d'appliquer la méthodologie à la plupart des bases azotées. ______________________________________________________________________________ MOTS-CLÉS DE L’AUTEUR : analogues de nucléosides; nucléosides; 1'-homonucléosides; cycloaddition de Diels-Alder; tandem ozonlyse et réduction; y-lactone; activation en groupe partant; couplage de bases azotée