Thesis (PhD(Agric) (Animal Sciences))--Univsersity of Stellenbosch, 1992. / The anatomy of the muscles of the hindquarters of the ostrich is described and presented graphically for the purpose of the present and future studies in meat science involving the ostrich. In the past, the lack of an accurate anatomical description of this species has led to the incorrect identification of certain muscles by researchers. The process of growth is described for 51 components of the ostrich body, which includes 21 muscles and four organs. Gompertz functions were calculated to formulate growth models for these components. Acceptable goodness-of-fit was obtained for the formulated models regarding the raw skin area, mass of the head, heart, filet and other muscles as well as certain bones. No information on similar models could he found for the description of growth of individual muscles or body parts of other meat animals. However, similar growth models are available for the description of live mass changes over time. Since the general growth curve is sigmoidal it is difficult to fit accurate curves by arithmetical methods. This has led to the development of simpler linear models, which express the growth of a body part relative to the growth of the same entire body. Time based predictions of yield are thus impossible. In fact, many of these allometric equations are simply in a different mathematical form, rather than being totally different equations. Furthermore, the latter equations cannot be used to predict accurate values at the positive and negative extremes since unrealistic values are obtained. Computer programs are presented in the dissertation which can be used without modification on various species, such as fish, poultry, plants and forests, as well as micro organisms in plant pathology, food science and sewage. With the development in computer technology and by means of the suggested programs, it is possible to describe the growth process on a time scale with ease. It is also possible to estimate the mass of any body part at birth (and possibly at conception) as well as at maturity. Evidence is provided that unrealistic asymptotic values are obtained with time based linear and polynomial functions as well as with published non linear allometric models for the description of growth in the ostrich. A goodness-of-fit test for the Gompertz function is presented. It is advisable to carry out this test before fitting alternative models, since the relationship between two variables is only linear on a double log scale when both variables can be described by similar functions on a time scale. A method for the calculation of the standard error at the point where maximum growth occurs is also presented. These methods can successfully be used for any of the above mentioned species. The point at which maximum growth occurred was used to compare the muscles of the hindquarters of the ostrich with that of Merino rams. This showed that these two species differ markedly in this regard. Furthermore, it was proved that certain economically important muscles still gained weight after the optimal skin size (120 dm2) was reached at the age of ten months. It is also shown that the fat content of ostrich meat (filet) varied independently of the abdominal fat content, and that it reached a minimum value of 0.3% at the popular slaughter age of 14 months. Reliable methods for age estimation of a slaughtered bird is presented, based on the growth models. This information can be used to develop a classification system for ostrich meat and other meat animals.

Artificial light at night (ALAN), or ecological light pollution, is increasingly prevalent worldwide. Exposure to ALAN tends to negatively impact animals—particularly, nocturnal animals—but life-history strategies may mitigate these costs. Animals in many regions are also increasingly exposed to climate-related stressors, such as heat and drought. Yet, interactions among ALAN, life-history strategy, and stress tolerance are unknown. Therefore, I determined if developmental ALAN exposure (1) affects development, (2) affects adult phenotype, including heat and desiccation tolerance, and (3) affects and/or interacts with life-history strategy. To address my aims, I used the variable field cricket (Gryllus lineaticeps) because its geographic range is increasingly exposed to ALAN, heat, and drought conditions; it exhibits different life-history strategies (flight-capability vs. flight-incapability); and it is mainly nocturnal. Although developmental duration and success were not impacted by ALAN exposure, ALAN affected adult phenotype, with a positive effect on body mass, body size, and reproductive investment, and a negative effect on heat tolerance. Life-history strategy also affected stress tolerance—flight-incapable females had greater heat tolerance, and their desiccation tolerance was improved by ALAN exposure. Thus, key features of environmental change (i.e., exposure to ALAN, heat, and drought) may favor some life-history strategies over others.

The effect of post-weaning supplementation of April-born Polypay and White Dorper lambs grazing alfalfa/orchardgrass pasture during two grazing seasons from June to September was studied. One hundred seventy Polypay and 133 White Dorper lambs were randomly allotted to supplemented (2% BW daily) and unsupplemented groups. It was discovered that Polypay lambs weighed more than White Dorpers at wearning, when the grazing season began, and at the end of the 80 (Year 1) and 85 (Year 2) grazing season (P < 0.01). Polypay lambs gained faster (P < 0.01) than White Dorpers. Supplemented lambs gained faster (P < 0.01) than unsupplemented and Polypays had a greater response to supplementation (P < 0.01) than White Dorpers. Polypays had higher (P < 0.01) fecal egg counts, an indicator of Haemonchus contortus infestation. Supplementation did not have any consistent effect on reducing Haemonchus contortus infestation. Differences in forage characteristics of Polypay and White Dorper lambs did appear. Differences in alfalfa and orchardgrass dry matter, neutral detergent fiber, acid detergent fiber, and crude protein availability were measured by subtracting enter from exit availabilities. The largest decrease of alfalfa components from exit to enter was found with unsupplemented Polypays. No consistent effect was found for orchardgrass components.

Master of Science / Department of Animal Sciences and Industry / Christopher D. Reinhardt / Angus steers (n = 17,919) fed at a single feedlot in southwestern Kansas between 1997 and 2007 were used to evaluate the effects of various demographic and phenotypic characteristics (season of arrival, geographic origin, health status, rate of gain, quality grade, and yield grade) on feedlot health, performance, and carcass traits. Cattle were not commingled and were predominantly preconditioned and backgrounded prior to shipment to the feedlot. Season of arrival was categorized as winter (December, January, and February), spring (March, April, and May), summer (June, July, and August), or fall (September, October, and November). Regions were: SC = Texas, Oklahoma, and New Mexico; C = Colorado and Kansas; NC = Montana, Nebraska, and Wyoming; and SE = Georgia, Mississippi, South Carolina, Tennessee, Virginia, and West Virginia. Steers that originated in SC had the poorest ADG (P < 0.01) and those originating in C had the greatest ADG, HCW, and quality grade (P < 0.01). Steers that arrived during fall had the lowest ADG and those arriving during the summer had the greatest morbidity (P < 0.01). Morbidity decreased and performance increased with increasing initial BW; quality grade was only minimally related to arrival BW in steers which were not treated for disease. After accounting for yield grade differences, the association between morbidity and carcass quality and between quality grade and heavier final BW and HCW were diminished, although ungraded cattle had lower ADG, final BW, and HCW (P < 0.01). Increasing yield grade from 1 and 2 to yield grade 3 increased percentage Choice by 12.1 points (P < 0.01); there was no additional gain in quality grade moving to yield grade 4 and 5. More rapidly gaining steers were heavier and fatter at marketing; this translated to greater quality grade in all but steers with initial BW > 375 kg. Performance was very similar among cattle which graded Prime, Choice, and Select, suggesting that producers do not need to choose between performance and quality grade; instead, much of the difference in quality grade can be explained by differences in yield grade.

Doctor of Philosophy / Department of Biology / Brett K. Sandercock / Samantha Wisely / Anthropogenic activities and climate change have dramatically altered landscapes worldwide. The ability of species to cope and adapt to ongoing changes is likely a function of their behavior, movements, and sensitivity to fragmentation. Greater Prairie-Chickens (GPC) are a lek mating grouse native to the Great Plains Landscape Conservation Cooperative (GPLCC), for which inbreeding depression and anthropogenic avoidance are a concern. The goals of my dissertation were to: 1) identify genetic correlates of male performance which may influence population viability under current land use practices, 2) identify GPC habitat characteristics and delineate areas of critical GPC habitat necessary for GPC conservation, and 3) identify the relative importance of distance and habitat quality for maintaining genetic connectivity among spatially structured populations. First, I found male reproductive success and survival to be positively associated with genetic diversity. Using multistate modeling in Program Mark, male survival across the observed range of variation in number of alleles (15-22) increased more than fourfold from 0.17 to 0.77. Second, I found 35-40% of Kansas, and 1.5 % (11,000 Km squared) of the GPLCC, were considered high-quality lek habitats. Top performing logistic models predicting lek presence (wi=0.95) included strong effects of grassland cover and avoidance of anthropogenic disturbance. When this model was applied to putative future landscapes based on climate change and current land use trends over a 70-year period, I found a 27-40% reduction in habitat area and a 137 Km southeast shift in habitat distribution. Under equilibrium conditions we expect isolation by distance (IBD) to explain the distribution of genetic diversity. However, if the landscape restricts dispersal, then we might observe isolation by resistance (IBR). I used model selection procedures to choose among competing IBR or IBD models to explain the distribution of genetic diversity among GPC populations across Kansas and the GPLCC. IBD was never supported (R-square<0.02, P>0.09). The best models for Kansas (R2=0.69, P<0.02) and for the GPLCC (R-square=0.46, P<0.02) indicated that human-mediated landscape changes have influenced landscape permeability for dispersal. The integration of behavioral, landscape, and genetic data provided new insights on prairie-chicken ecology, and is a powerful approach for developing conservation strategies for sensitive species.

Master of Science / Department of Agricultural Economics / Kevin C. Dhuyvetter / The 2008 National Stocker Survey defines the backgrounding/stocking of cattle as ―operations where calves are grown after weaning and/or preconditioning but before the feedlot. This includes calves purchased for this purpose as well as those retained by cow-calf producers post-weaning, but before marketing or retention through the feedlot. Backgrounding offers many benefits to farmers including, but not limited to, adding value to their feedstuffs—hay, grain, etc.—by feeding it to their cattle and potentially spreading risk by increasing marketing time or engaging in contracts with feedlots. However, producers also take on increased costs as it takes more time to wean, bunk-train, vaccinate, etc. compared to other operations in the cattle industry. This thesis attempts to analyze two studies using the 2008 National Stocker Survey. The first is how producer and operation characteristics—producer age, type of operation, income derived from backgrounding—relate to why producers find variables such as cattle prices, animal health management, marketing practices, and nutrition important. The second is how producer and operation characteristics relate to producers that use futures market contracts and options on futures. Binary and ordered logit models were used to find the statistical significance of the aforementioned studies.Since this survey was specifically designed to profile the stocking/backgrounding industry, some of the estimated models did not add a lot of value beyond the summary statistics for the various dependent variables. That is, the ordered logit models did not identify any strong relationships given that almost all of the producers that responded to these questions found feeder cattle prices, animal health management, marketing practices, and nutrition very important, which can be seen by analyzing the summary statistics. In addition, the binary logit models that were used for the futures market contract and options on futures models, found that the best way to pinpoint producers using either futures contracts or options was if producers were already using risk management strategies. Therefore, the survey’s purpose of profiling the stocker industry may be its best use.

Master of Science / Department of Clinical Sciences / Michael D. Apley / One hundred ninety four steers, bulls, and heifers weighing 182-318 kg were purchased at an Arkansas sale barn and shipped 12 hours to a northern Kansas feedlot. There was no previous history of treatment and the cattle had been delivered to the sale barn within the 24 hour period prior to the sale. The objectives of the study were to evaluate (1) bacterial pathogen isolates in different locations in the respiratory tract, (2) pathogen load in clinically ill and clinically normal calves, and (3) compare histological damage that may be a result of clinical disease. Fifteen calves were identified with signs of acute bovine respiratory disease (BRD) based on clinical score and a minimum rectal temperature of 40° C. An additional 5 calves with no clinical signs and rectal temperatures < 40° C were selected as controls. Cattle were humanely euthanized following recording of antemortem clinical observations. At postmortem, samples for microbiologic and histologic (hematoxylin and eosin stain) analysis were collected from grossly normal and/or consolidated tissue in each lung lobe. Samples were also collected from the tonsils and trachea. Quantification of the BRD pathogens per gram were determined for each positive site and then converted to total counts for each animal. Total colony forming units (CFU) of pathogens in the entire lung for cattle with identified pathogens ranged from 2x10[superscript]7 – 2x10[superscript]8 CFU for Pasturella multocida and 9x10[superscript]6 – 9x10[superscript]8 CFU for Mannheimmia haemolytica. Total visual estimated percent consolidation ranged from 0.0% to 45.0% of the total lung. Isolated pathogens from the upper and lower respiratory tract were compared and showed to have no significant agreement. Histology scores of 0-4 were assigned to the tissue samples and compared to the quantified BRD pathogens to test a possible association between the pathologic process and the total agents in that tissue sample. A significant difference in bacterial counts between histology scores of zero or 1 and a histology score of 4 was observed.

Doctor of Philosophy / Department of Animal Sciences and Industry / Jim L. Nelssen / Eleven-thousand one-hundred eighty-five pigs were used in 11 experiments to determine effects of birth-weight, feeder design, and dietary astaxanthin (AX) and ractopamine HCl (RAC) on growth, carcass, and pork quality characteristics of pigs. Also, data from 27 experiments were used in meta-analyses to improve prediction of pork fat iodine value (IV). In Exp. 1, increased birth-weight resulted in greater (quadratic, P < 0.05) pre-weaning survivability, ADG, final BW, and likelihood of achieving full-value market at 181-d of age. In Exp. 2, 3, 4, 6, 7, and 8, pigs using the wet-dry feeder (WD) had greater (P < 0.05) ADG, ADFI, and final BW than those using the conventional dry feeder (CD). Pigs using WD had poorer (P < 0.05) G:F in Exp. 3 and 4, and increased (P < 0.05) HCW and backfat depth in Exp. 3, 4, 6, and 7, compared to pigs fed using CD. In Exp. 5, pigs using WD from 19 to 38 kg had decreased (P < 0.02) ADFI and better G:F than pigs using CD. Increased feeder opening of WD increased (P < 0.05) ADG, ADFI, and final BW in Exp. 5, 6, and 7; as well as HCW and backfat depth in Exp. 6 and 7. Reducing WD opening at 28- and 56-d in Exp. 7 decreased (P < 0.05) ADG, ADFI, and backfat depth. Different openings of CD had little effect on performance in Exp. 5 and 6. In Exp. 8, changing water-source of WD to a separate location during late-finishing reduced (P < 0.05) overall ADG, ADFI, and final BW. Limited responses to AX were observed in Exp. 9, 10, and 11, but ADG, G:F, final BW, HCW, and fat-free lean were improved (P < 0.05) for pigs fed RAC in Exp. 10 and 11. Total color change during retail display of LM chops for gilts and pigs fed RAC was reduced (P < 0.05) in Exp. 10 and 11, indicating their color shelf-life improved. In the meta-analyses, models using dietary PUFA with ADG, BW, or backfat depth improved the fat IV prediction from R2 = 0.45 to R2 = 0.90.

Master of Science / Department of Animal Sciences and Industry / Michael D. Tokach / A total of 5,212 nursery pigs were used in 11 experiments to evaluate amino acids in nursery pig diets. Experiments 1 and 2 were conducted to determine whether the Lys level fed during one phase of the nursery influenced the response to Lys during subsequent phases. Experiment 1 tested a wide range of dietary Lys in 2 phases and reported that pigs fed high Lys during each period had increased growth performance; however, compensatory growth occurred for the pigs previously fed low Lys diets, resulting in no impact on overall ADG or final BW. Experiment 2 tested a narrow range of dietary Lys in 3 phases and found that marginally deficient diets can be fed in the early nursery phases without influencing final BW or the response to Lys levels in subsequent phases. Both experiments demonstrate that the low dietary Lys levels used in each can be fed in the early nursery phases with no negative impact on overall nursery growth rate provided that adequate levels are fed thereafter. Experiments 3 to 6 were conducted to determine the standardized ileal digestible (SID) Lys requirement of nursery pigs from 7- to 14-kg. Data from all experiments were combined and break-point and quadratic broken-line analysis was used to determine the estimated SID Lys requirement. The SID Lys requirement for optimal growth was at least 1.30% for ADG and 1.37% for G:F, or at least 3.86 and 4.19 g SID Lys/Mcal ME, respectively. Experiments 7 to 11 were conducted to evaluate the effect of replacing specialty protein sources with crystalline AA and AA requirements for 7- to 12-kg pigs. Experiment 7 demonstrated that crystalline AA can be used to replace fish meal in diets with no negative effects on growth performance. Experiment 8 demonstrated that L-Trp, L-Val, and a source of non-essential AA were needed in low-CP, AA-fortified nursery diets to achieve maximum growth performance, whereas the addition of L-Ile was not required. Experiment 9 indicated that feeding greater than 7.35% total Lys:CP decreased growth performance and Exp. 10 indicated that a SID Val:Lys ratio of 65% was sufficient for optimal growth of early nursery pigs. Implementing the results from the previous experiments, Exp. 11 determined that crystalline AA in nursery pigs diets can replace high amounts of fish meal, meat and bone meal, and poultry meal when balanced for minimum AA ratios and maximum Lys:CP with no negative effect on growth performance.

Master of Science / Food Science / Edgar Chambers IV / Palatability of pet foods is judged by the use of animals in colonies. Pet food manufacturers would like to understand how palatable a food is compared to another food. This generally is accomplished by a two pan test where a pet has the opportunity to freely choose between two foods. Preference is evaluated through the use of an intake ratio, the ratio of the amount of test food consumed divided by the total amount of the foods consumed. Although this is easy to do in laboratories, another option would be to do such studies with animals in more ‘real-life’ home environments. The purpose of this study was to develop, and test a method to capture feeding information from a study of canines in the home environment and analyze the results of the palatability tests. Individual dog owners were screened for information on the household and pets. Twenty-five dogs of different ages, breeds and sizes were selected to participate on the in-home panel. Seven different palatability tests were performed using the in-home panel with four of those tests being replicated; a total of 11 comparative tests. These dogs were tested using a proprietary computer-based technology that collected information about intake of each food for each individual dog for a duration of seven days for each of the 11 comparative studies. Data was analyzed and resulted in showing that differences between foods can be found. Statistical analyses compared initial day one data to subsequent day data collected during each study to determine whether a full seven day test was needed. In addition, comparisons were made to compare the impact of prior foods eaten to subsequent preferences of the dogs. Results of the in-home panel were the same on day one as for all seven days of testing. Also, previous exposure to a food did not alter subsequent preference for that food. Such data has implications for pet food manufacturers related to timing and cost of testing.