Evolutionary history has been recognized as an important factor in studying ecological communities. Lake fish communities have had limited consideration from a community phylogenetics perspective and present the opportunity to include trophic interactions in the analysis. For the species under study, I used known phylogenies from the literature and genetic information to determine relative branch lengths and phylogenetic relationships by Bayesian inference. Using the resultant phylogenetic tree and fish community data, the phylogenetic community structure was determined for the lakes in the Manitoulin Island and LaCloche regions of Ontario, Canada. Evidence of phylogenetic structuring was found, particularly associated with piscivory, winter hypoxia tolerance, and thermal preferences for deep coldwater lakes. Although the majority of the lakes were weakly structured from a phylogenetic perspective, significant trends were nonetheless apparent; especially when further informed by examining species-specific trends, demonstrating that evolutionary history can play a role in structuring freshwater fish communities.

Evolutionary history has been recognized as an important factor in studying ecological communities. Lake fish communities have had limited consideration from a community phylogenetics perspective and present the opportunity to include trophic interactions in the analysis. For the species under study, I used known phylogenies from the literature and genetic information to determine relative branch lengths and phylogenetic relationships by Bayesian inference. Using the resultant phylogenetic tree and fish community data, the phylogenetic community structure was determined for the lakes in the Manitoulin Island and LaCloche regions of Ontario, Canada. Evidence of phylogenetic structuring was found, particularly associated with piscivory, winter hypoxia tolerance, and thermal preferences for deep coldwater lakes. Although the majority of the lakes were weakly structured from a phylogenetic perspective, significant trends were nonetheless apparent; especially when further informed by examining species-specific trends, demonstrating that evolutionary history can play a role in structuring freshwater fish communities.

Over the next three decades, there are many predicted disturbances to Earth’s oceans, such as El Nino and hurricanes, which will lead to mass coral bleaching effects. Marine protected areas have been utilized worldwide to maintain coral population sizes and remediate external stressors, such as overfishing or mining. Using a series of modeling techniques, this thesis will propose an experiment that will determine the optimal distance and location for a future MPA in New Zealand. It will also be measuring whether one large reserve or a network of smaller MPAs are more effective in the regeneration of stony corals. These models will be based on Solemosmilia variabilis, the most common stony coral in the region. Based on past studies, it is hypothesized that there will be a significant positive increase with the metapopulation growth of corals in both protected areas. It is also predicted that there will be a higher rate of connectivity within a network of smaller marine protected areas if the MPAs are less than 2 km apart. If the distance is greater, one larger MPA will be more effective due to the lower rates of genetic drift.

Recent studies within the past decade or so have shown the importance of algae in geomorphic and hydrologic processes of lotic systems. However, the ecohydraulic role of algae in bedrock systems has largely been ignored. In addition, the utility of algae as indicators of channel dynamics have often been assumed by geomorphologists, but relatively few studies have examined this relationship. The purpose of this study was to determine whether algae, specifically diatoms, are useful indicators of channel geomorphological dynamics, and to examine if distinct habitats or biotopes typical in fluviokarst and bedrock systems provide unique habitat space for diatoms, and to address the potential ecohydraulic implications. The investigation was performed in a 100 m reach of Shawnee Run, a limestone, fluviokarst tributary to the Kentucky River in Mercer County, KY. The results of the study showed that periphyton are not useful indicators of channel dynamics, and that biotopes and other distinct habitats, including riffles, bedforms, and fine sediment, do not provide unique habitat in terms of diatom community composition.

No description available.

Over the past two decades, Lake Winnipeg has been experiencing increasingly rapid eutrophication, and large cyanobacterial blooms now form in the North Basin in most years in late summer or fall. Cyanobacteria are considered a relatively poor food source compared with other phytoplankton, but the impacts of these blooms upon the primary consumers in the lake have not previously been researched. A microscopic analysis of whole water samples found cyanobacteria to be scarcely present in summer 2012, with nitrogen-fixing and non-fixing cyanobacteria comprising 11.2% and 8.4% of the basin-wide biovolume, respectively, and all but absent in fall. Gut content analysis of chironomids found that cyanobacteria made up an almost negligible part of their diet. Stable isotope analysis revealed that nitrogen-fixing cyanobacteria reduced phytoplankton δ15N values, and that this same reduction could be traced through the zooplankton, but not down to the sediments or chironomids.

To assess the affects of permafrost degradation on key components of the aquatic food web, an in situ manipulative mesocosm experiment was performed in an upland, unslumped Arctic lake located near Inuvik, Northwest Territories. In total, twelve replicate mesocosms were established, 3 control and 3 replicates of 3 treatment levels each dosed with differing amounts of sediments sourced from a nearby thermokarst slumped lake. Findings from the experiment showed that pelagic autotrophic processes had the greatest potential to contribute to higher trophic levels regardless of treatment. Even in the high sediment treatment level, which showed the least pelagic autotrophic production, pelagic autotrophic production was two orders of magnitude greater than pelagic heterotrophic production and 5 times greater than benthic autotrophic or heterotrophic production. Sediment treatment had no significant effect on benthic primary productivity; however, a 500% increase in benthic heterotrophic production was observed. This raises the possibility that increased activity in benthic heterotrophic production is the first step in thermokarst-affected lake ecosystem succession leading to the proliferation of benthic primary production observed in many slumped lakes in the western Canadian Arctic. Water column phosphorus concentrations increased with increasing sediment treatment while pelagic primary production decreased and zooplankton biomass increased. These results suggest that the initial effect of thermokarst disturbance is an enrichment of the system and that top-down predation from zooplankton regulate the abundance of phytoplankton in these systems. If incidences of thermokarst disturbance continue to increase as predicted by current climate models/scenarios, results from this study suggest that the structure and function of Arctic aquatic ecosystems will be significantly impacted. This study highlights the need for further research to obtain a better mechanistic and predictive understanding of the potential effects of thermokarst disturbance on the geochemistry and ecology of Arctic lakes at relevant spatial and temporal scales. / Graduate

This study describes the delineation of appropriate sites for aquaculture using remote sensing, GPS and GIS. A 1996 composite Landsat TM image covering the south-western part of Bangladesh was used to identify water bodies, the extent of brackish water and associated land use features in the image. The Remote Sensing image was complemented by digitised secondary data from a range of sources, including hard copy maps to produce a GIS database which included environmental layers such as water bodies, rivers, soils, land use, temperature, rainfall, salinity and pH. The database also included infrastructural issues, such as roads, railways, processing plants, towns and cities. A series of GIS models were developed in order to identify and prioritise the most suitable areas for freshwater prawn, tilapia and carp and brackish water shrimp and crab farming. A range of scenarios for land allocations were used to develop a series of resource use models linked to likely production outcomes. Global warming and accelerated sea level rise is considered in the study area with different sea level rise scenarios of 50, 100, 150 and 200cm. The consequence of land losses and displacement of the population from the area in different situations is discussed. The economic characteristics of shrimp farming and alternative land uses in the Khulna region were also considered. Five land use options were studied based on economic output and job potential. Among these, brackish water shrimp and crab culture, moderately saline tolerant tilapia and prawn culture, fresh water carp culture and traditional rice production systems, and fresh water prawn culture performed best followed by brackish water shrimp and crab culture. This study showed the extent of potential for aquaculture in the Khulna region and further demonstrates the usefulness of GIS as an aquaculture-planning tool. Model programming was also found to be very useful tool to enabling regenerating of multiple scenarios very quickly. Overall, GIS modelling associated with remote sensing has great potential for informed decision-making in aquatic production systems and optimising management of natural resources in a region where they are already under considerable pressure. The implications for use of these systems in reducing land use conflict and sector planning for the region are discussed.

To monitor and assess direct anthropogenic impacts on an aquatic system requires knowledge of its natural variation. The goal of this study explored natural variation in the lake fish communities of the northern Bruce Peninsula, which may act as a reference condition for other studies. The results of this study indicated there has been a shift towards more small-bodied, native species present in the fish communities, potentially a result of beaver activity in the area. A second goal was to calculate gear sampling efficiencies to enable the design of efficient monitoring protocols for fish communities in small, shallow lakes. It was concluded that a wide variety of gears are required to assess the fish species composition in a lake. Fine-mesh hoops were the most effective gear; however, saturation was never obtained for boat electrofishing; therefore, additional research is required to determine effectiveness relative to the fine-mesh hoop net.

To monitor and assess direct anthropogenic impacts on an aquatic system requires knowledge of its natural variation. The goal of this study explored natural variation in the lake fish communities of the northern Bruce Peninsula, which may act as a reference condition for other studies. The results of this study indicated there has been a shift towards more small-bodied, native species present in the fish communities, potentially a result of beaver activity in the area. A second goal was to calculate gear sampling efficiencies to enable the design of efficient monitoring protocols for fish communities in small, shallow lakes. It was concluded that a wide variety of gears are required to assess the fish species composition in a lake. Fine-mesh hoops were the most effective gear; however, saturation was never obtained for boat electrofishing; therefore, additional research is required to determine effectiveness relative to the fine-mesh hoop net.