This report contains the results of some ecological and systematic studies on the diatoms from the Vaal Dam catchment area in the Transvaal, and the Bloukrans River in the Eastern Cape Province. In Part 1 the effects of high concentrations of nitrogen were studied in relation to the composition of the diatom associations. Water samples from four stations on the Bloukrans River were analysed chemically at certain intervals during the months of April and August 1967. Diatom samples collected from these stations at the beginning and end of each of these sampling periods were subjected to a "Thomasson Analysis" to determine the relative densities of the various species in the diatom associations. A statistical analysis of the results reflected a poor but positive correlation between the two variables, i.e. high numbers of nitrogen heterotrophic Nitzschiae were correlated with high concentrations of nitrogen, while low numbers were correlated with low concentrations. Part 2 presents the results of the ecological studies on the diatom associations of the Vaal Dam Catchment Area. In this section the diatom associations from each sampling point or station were subjected to a "Thomasson Analysis" to determine the relative densities of the different species in the associations. Employing already known correlations between environment and association, the results of this analysis were discussed and the ecological conditions for each sampling station were assessed. The associations were similar in composition over the entire catchment area, and indicated on the whole water of good quality. Points of pollution were detected, but were generally localised and the effects of the pollution were soon removed. Only the Waterval River showed evidence of more constant pollution. The associations provided evidence for some seasonal variation in their composition. Finally in Part 3 the systematics and taxonomy of the diatoms in the Vaal Dam catchment area are discussed. References are made to the original and more recent descriptions of each species found in this study, and a list of synonyms is given wherever 'possible. Comments on the systematics, taxonomy and autecology of each species are given, and the distribution of the species in South Africa and the Vaal Dam catchment area is discussed. A number of species, varieties and forms have been recorded for the first time in South Africa. During the course of this study 20 species have been described as new to science; the descriptions of some have been published, while the descriptions of the others will be published formally in the future. All species described as new or having interesting features are illustrated in the plates.

Ph.D. / The investigations reported here conducted during 1990-1994 had the following objectives: Selection of representative localities in impoundments and rivers in wetlands affected by radionuclide- and metal-containing effluents and seepage water from mines and metal-processing industries. To determine the occurrence and concentration of radionuclides and selected metals in mine- and industry-polluted waters and sediments in catchments of the Blesbokspruit, the Klip River and the Crocodile River systems. To establish radionuclide and metal concentrations in some semi-aquatic and aquatic weeds in these mine- and industry-polluted waters with observations on the ability of some plants to accumulate certain metals in their roots and/or shoots. To evaluate some benthic macro-invertebrate organisms as possible indicators of radionuclide and metal pollution in the affected streams. To determine the radionuclide and metal concentrations in selected vegetable crops irrigated with mine- and industry-polluted water. The localities where the investigation took place were mainly in wetland regions on the East and West Rand. Water of polluted streams traverse expansive wetlands containing floating, emergent and submerged aquatic vegetation. These plants play an important role in the recovery from pollution of the affected waters. Pollutants are also available to and accumulated by other aquatic organisms such as crabs, fish and birds. In addition, the same water is often used for the irrigation of vegetable crops, thereby creating potential pathways through which these pollutants may be consumed by humans. All the above objectives have largely been met in as such that potential sources of pollution were identified and pollutants detected in the abiotic (water and sediments) environment. These pollutants were also found in wetland biota as well as agricultural crops irrigated with contaminated water. Potential pathways for the transfer of these pollutants were identified and dose assessment modelling was conducted.

This report on the diatoms (Bacillariophyta) of the Sundays and Great Fish rivers is divided into two sections. In Volume 1 the taxonomy of the diatoms from these two river systems is examined. A total of 331 taxa were studied, of which 5 are described as new species. Two taxa are given new names, since they were previously known under later homonyms. Twenty seven taxa were recorded for the first time from South Africa, while a number of species are given amended descriptions in the light of fresh information obtained concerning them. A few taxa (chiefly South African forms) have been united with previously described taxa. For the remainder of the taxa mentioned in the text, comments are passed with regard to their taxonomy and dimensions, based on facts gained through literature surveys and personal observations of the relevant taxa. As far as possible all taxa examined in Volume 1 are illustrated, and these illustrations are presented in Volume 3 of this study. Volume 2 deals with the ecology of the diatoms in the Sundays River. Special emphasis is laid on relating the composition of the diatom associations at the selected stations to the ambient salinity and ionic composition of the water. A new index, the Salinity Tolerance Index (STI), is proposed to summarize by means of a numerical value the information obtained from the analysis of a diatom association with respect to the character of the component taxa, and to indicate whether the association is derived from a freshwater, brackish water or marine source. The efficacy of the STI is evaluated in the text. The effect of the geological formations of the Sundays River valley and the underground waters emanating from them is discussed in the text. The consequences of a severe drought in the lower Sundays River, including hypersaline water in the upper estuary, on the diatom flora are also investigated.

Fishways are devices that are increasingly being used worldwide to assist aquatic biofauna to migrate through man-made barriers such as weirs and large-scale dams that are used for water storage, electricity generation etc. and have a negative impact on both the upstream and downstream movement of aquatic organisms. Fishways are usually low gradient channels with evenly placed chambers which allow such migrating aquatic species minimal stress on their passage over these barriers. Despite the existence of national and regional policies for their provision, their construction has often been inhibited through a lack of local assessment of the available designs, and use of ineffective international designs. As part of a larger national research programme, sponsored by the Water Research Commission, to develop a protocol for fishway design and implementation, this study sought to investigate the suitability of vertical slot and sloping baffle designs to assist the migrations of juvenile catadromic fish species in the ebb and flow region of rivers in the Eastern Cape, South Africa. These fishways were initially tested under controlled conditions at the Experimental Fish Farm at the Department of Ichthyology and Fisheries Science, Rhodes University using various fish species. Using the performance data thus collected they were then installed and monitored in the field for the catadromic Myxus capensis (freshwater mullet) and Monodactylus falciformis (cape moony) migrations during March and November of 2005 at the Kowie River ebb and flow weir. The laboratory tests showed that there was a significantly higher level of migration success in the vertical slot compared with the sloping baffle fishway under all conditions (F=82.157; p<0.001). There was, however, a slow decline in levels of success with increased discharge in the vertical slot fishway. This was in contrast to the sloping baffle design where success increased as discharge increased at a steep gradient (F=74.894; p<0.005). The level of success with the M. capensis was related to the size of the fish for both systems with success increasing from the small to the large fish (F=17.755; p<0.001). For the M. falciformis higher levels of success were found to occur in the vertical slot fishway compared to the sloping baffle fishway (F=11.792; p<0.00086), with no significant differences being found with an increase in discharge. Field data indicated similar trends with higher migration success using the vertical slot fishway. M. capensis were better able to negotiate both devices compared to the M. falciformis and overall levels of success were higher for both species in the field than under laboratory conditions where the migration urge may have declined.

Introduction: Phosphorus is an especially scarce element in the aquatic environment, yet it is of vital importance to living organisms: the pyrophosphate bond is the basis of biochemical energy transfer, and phosphate groups make up the backbone of the nucleic acids (Wetzel, 1975). An understanding of phosphorus movements and transformations is thus essential to a study of the biological functioning of a lake. The present report describes a study of phosphorus dynamics inSwartvlei, a lake with an extremely low pelagic primary production rate, in the order of 0,15 gC.m⁻².d⁻¹ (Robarts, 1973; Howard-Williams and Allanson, 1978). The littoral phosphorus dynamics of Swartvlei have been discussed in some detail (Howard-Williams, 1977; Howard-Williams and Allanson, 1978), and what follows is an attempt to quantify the changes in phosphorus concentration occurring in the deeper parts of the lake, which comprise some 57% of the total area.

As a result of research carried out within the last decade to assess the diversity of macroinvertebrates of the Salt River in the Western Cape Province, South Africa, surveys of macroinvertebrates of 20 sites on 11 selected rivers from the same mountain range source were undertaken. This was done to make a preliminary assessment of the conservation status of the rivers of this region. Aquatic insects from the orders Ephemeroptera, Odonata, Plecoptera, Megaloptera, Trichoptera and the dipteran family Simuliidae were collected using techniques to maximize the number of taxa found. The insects collected were identified to species level where possible. Water physicochemical parameters were recorded at all sites for each sampling trip to characterize these rivers and to establish a set of baseline data for future comparisons. These parameters included measurements made on site and analysis of the concentrations of all the major ions in water samples in the laboratory. Multivariate analyses including Principle Components Analysis and Canonical Correspondence Analysis were used to reveal patterns within the water physicochemistry and species distributional data. Results include the identification of 123 species from 70 genera and 30 families. A total of 31 species were found to be undescribed, of which 17 were not previously collected and are thus completely new to science. In addition, four of these species could not be placed into any known genus. The analysis of water physicochemistry showed a clear distinction between rivers of Table Mountain sandstone and Bokkeveld shale origin. Downstream effects of anthropogenic influences were discernable too. Distinct macroinvertebrate assemblages were found based upon stream order and water chemistry composition. pH proved to be the most important driver of invertebrate assemblage composition. The high levels of endemism of the macroinvertebrates found within the upper reaches of these rivers and their degree of ecological specialization make these systems a priority for the conservation of aquatic biodiversity on a national and global scale.

Through out this study ‘relational scenarios’ were seen as the possible outcomes of the expression of human-river relationships in a catchment. Working within Inglis’s (2008, pg. 10) comment that ‘the Human World Relationship is expressed through a person’s views and behaviour towards the natural world, which can be either constructive or destructive’, two relational scenarios were selected to represent these two predicted outcomes of human-environment (or in the case of this thesis human-river) relationships: IWRM, seen as constructive and mutually beneficial to both the social and ecological system, and the Tragedy of the Commons, seen as destructive and parasitic in nature. In respect to this assertion, a conceptual framework or model was developed and used to guide the inductive process of this research. Through a social survey (administered via semi-structured interviews) of stakeholders (water-users) in the Kat River Catchment, Eastern Cape, South Africa, social attitudes towards the Kat River were explored. These attitudes were considered as variables that relate to the expression of ‘Human World Relationships’ namely ‘values and behaviour’ (Inglis, 2008, pg. 10). The findings of this thesis confirm that attitudes are influential components of human-river relationships in the Kat River Catchment. It was observed from the findings that the attitudes individuals have towards the Kat River have the potential to influence the ways people interact with the River and its associated resources, and are in turn influenced by the condition of the River and connections people have or make with the River within their daily lives. Such relationships in turn affect the management of the River and its water resources and influence how individuals approach water-related issues and undertake the associated activities. Given this understanding it was then proposed that attitudes could provide information that enables the prediction of likely ‘relational scenarios’ (IWRM or the Tragedy of the Commons) in a catchment. The findings appear to support this proposal, and three main attitude groups (utilitarian, associative and dissociative) were identified and used to further the discussion into how this knowledge could be used in predicting possible relational scenarios based on human-river relationships. Further exploration of the identified attitude groups suggested that these variables are significantly influenced by environmental ethics and place attachment (present in the community) and a series of guiding frameworks were developed to facilitate the exploration of the attitude groups relative to these concepts. The frameworks were generated from the hypothesis that knowledge of attitude groups in a catchment, in connection with the relative degrees to which moral values and worldviews are expressed, could provide insight into the readiness of a catchment system for the implementation of IWRM and/or the facilitative steps needed to shift the influence of unfavourable attitude groups (i.e. dissociative attitudes). Such steps would most likely involve extensive educational, awareness and capacity building programs. Finally, given the above theoretical frameworks, inductively developed from the findings of the social survey and related literature, the conceptual model was reevaluated and extended to include the thesis findings and hypotheses. It is suggested that in a catchment where there is a balance between the expression of utilitarian and associative attitude groups, then there is a high probability of finding present evidence of mutually beneficial human-river relationships already in play, as well as ‘fertile soil’ for the promotion of IWRM and philosophies and skills that generate such relationships. Alternatively in an area with a strong expression of dissociative attitudes, it is more likely to find evidence of destructive, more parasitic-like relationships being expressed, and a lack of commitment and interest in being involved in changing the status quo. It is likely that where both associative and dissociative attitudes are present there will be an overlap of elements of both scenarios – a situation that is probable in most catchments – depending on the strength of expression of either attitude group the balance will shift (be shifting) between the two relational scenarios.

Water resources are under ever-increasing pressure to meet the demands of various water users both nationally and internationally. The process of anthropogenically-induced salinisation serves to exacerbate this pressure by limiting the quantity and quality of water available for future use. Water quality guidelines provide the numerical goals which water resource managers can use to adequately manage and protect aquatic ecosystems. Various methods which have been developed and used internationally to derive such guidelines are discussed. Acute toxicity tests were conducted using two inorganic salts, NaCl and Na₂SO₄. Field collected, indigenous, freshwater macroinvertebrates were used as tests organisms. Data generated from these tests contributed to the expansion of the currently limited toxicological database of response data for indigenous organisms and the suitability of using such organisms for future testing was discussed. Salt sensitivities of indigenous freshwater invertebrates were compared those of species sourced from an international toxicological database and were found to have similar ranges of tolerances to NaCl and Na₂SO₄. Species sensitivity distributions (SSDs), a method of data extrapolation, were derived using different types of toxicological data, and hence different guideline values or protective concentrations were derived. These concentrations were equated to boundary values for South Africa’s ecological Reserve categories, which are used to describe degrees of health for aquatic ecosystems. Provisional results suggest that using only acute toxicity data in guideline derivation provides ecosystem protection that is under-protective. Chronic toxicity data, which include endpoints other than mortality, provide the most realistic environmental protection but lack data confidence due to small sample sizes (acute tests are more readily conducted than chronic tests). The potential contribution of sub-chronic data to guideline derivation is highlighted as these data are more readily extrapolated to chronic endpoints than acute data and sub-chronic tests are not as complex and demanding to conduct as chronic tests.

The Kat River is an agricultural catchment that drains salt rich geology. Potential salinity impacts on ecological condition of the river were investigated. Monthly salt concentrations and flow discharges were monitored at ten sites along the Kat River below the Kat Dam. Monthly salt loads were computed to relate salinity to land use and ionic data used to assess the toxicity of major salts using the TIMS model. Concentration duration curves for sodium chloride were derived from flow concentration relationships, representing sodium chloride concentrations to which the aquatic ecosystem had been exposed. The ecological condition was assessed at nineteen sites using SASS5 biotic index over four seasons. Finally, the modelled instream salt concentrations and bioasessments were evaluated in terms of the modelled level of species protection afforded at different salt concentrations. Species Sensitivity Distributions (SSDs) were used for this exercise. There was a general downstream increase in salinity with the minimum concentrations recorded at the Fairbain tributary (84 mg/L) and maximum levels at the sewage outfall in Fort Beaufort (1222 mg/L). There was evidence that citrus irrigation upstream of Fort Beaufort increased salinisation. Sodium chloride, and to a lesser extent magnesium sulphate, were the dominant salts in the Kat River catchment, with the latter being more toxic. However these had little or no impact on the aquatic ecosystem. Flow-derived sodium chloride concentrations showed that both the Balfour and Blinkwater tributaries were in a fair/ poor condition. However with regard to ecological condition, it was demonstrated that the river is generally in a good state except for the Blinkwater River and the lower catchment. Degraded habitat condition at the Blinkwater was responsible for poor ecological condition. Integrating SSD derived classes, sodium chloride classes and ecological condition indicated that sodium chloride is a driver of ecological condition at the sewage treatment works and the subsequent site (only two of nineteen biomonitoring sites).