The problem of this thesis consists of a bacterial analysis of twenty-five representative wells within a radius of thirty miles of Canyon, Texas. An attempt has been made to determine the possible presence of the typhoid organism in these wells.

A bacterial analysis of the water from thirty-six sources of consumption by the white population of Trinidad, Henderson County, Texas, was made to determine the potability of each of these in regard to infection from typhoid or related organisms.

Thesis (PhD)--University of Stellenbosch, 2005. / ENGLISH ABSTRACT: Several genera of cyanobacteria produce a range of toxins. The increased rate of eutrophication of surface fresh waters due to anthropogenic inputs has resulted in more frequent and severe cyanobacterial bloom events. Such bloom events make impoundments unsuitable for recreational use and increase the cost of production of potable water due to the necessity for removal of toxins released from cells during the purification process. Microcystis aeruginosa is the major freshwater bloom-forming toxic cyanobacterium. Concentrations of the hepatotoxin, microcystin, are highly variable in blooms. Published literature on environmental conditions leading to increased microcystin production was often contradictory and in many cases did not consider all relevant parameters. However, environmental nitrogen and phosphorus, temperature and light, and growth rate were implicated in regulation of toxin content. The purpose of this work was therefore to investigate environmental factors (specifically nitrogen and phosphorus) and cellular activities (specifically carbon fixation and nitrogen uptake rates and growth rate) involved in the modulation of microcystin production in M. aeruginosa in order to clarify the role of these parameters, and in an attempt to identify regulatory mechanisms for microcystin production. Environmental nitrogen, phosphorus and growth rate were shown to co-modulate microcystin production in M. aeruginosa. Adequate phosphorus is required for photosynthetic carbon fixation. Phosphorus uptake by M. aeruginosa is strongly correlated with carbon fixation rate. Although microcystin content increased with increasing nitrogen:phosphorus ratios in culture medium, under phosphorus limitation microcystin content was lower irrespective of nitrogen concentrations. This observation and the requirements for fixed carbon for nitrogen assimilation therefore prompted investigation of the effects of cellular carbon fixation and nitrogen uptake in the modulation of microcystin production. Microcystin production was found to be enhanced when nitrogen uptake rate relative to carbon fixation rate was higher than that required for balanced growth. The cellular nitrogen:carbon ratio above which microcystin concentrations increased substantially, corresponded to the Redfield ratio for balanced growth. Investigation of potential regulatory mechanisms involving the cyanobacterial nitrogen regulator, NtcA, yielded putative NtcA binding sites indicative of repression in the microcystin synthetase gene cluster. In culture, the polypeptide synthetase module gene, mcyA, and ntcA were inversely expressed as a function of carbon-fixation:nitrogen-uptake potential. However, no increase or decrease in microcystin production could be linked to either glutamine, glutamate or a-ketoglutarate, metabolites that are involved in regulation of ntcA. The role of NtcA in regulation of microcystin production could therefore not be confirmed. In conclusion, these data suggest that microcystin production is metabolically regulated by cellular C:N balance and specific growth rate. The primary importance of nitrogen and carbon was demonstrated by a simple model where only nitrogen uptake, carbon fixation and growth rate were used to predict microcystin levels. The model also explains results previously described in literature. Similarly, an artificial neural network model was used to show that the carbon fixation dependence on phosphorus allows accurate prediction of microcystin levels based on growth rate and environmental nitrogen and phosphorus. / AFRIKAANSE OPSOMMING: Verskeie genera van sianobakterieë produseer 'n verskeidenheid van toksiene. Die toename in die tempo van eutrofikasie van varswater oppervlaktes as gevolg van antropogeniese insette veroorsaak al hoe meer en al hoe erger sianobakteriële infestasies. Dit veroorsaak probleme vir ontspanninggebruik van hierdie waters en verhoog die koste van produksie van drinkbare water as gevolg van die noodsaak om die toksiene wat deur die selle gedurende die suiweringsproses vrygelaat word te verwyder. Microcystis aeruginosa is die belangrikste varswater bloeisel-vormende toksiese sianobakterium. Die konsentrasie van die hepatotoksien mikrosistien is hoogs varieerbaar in sulke bloeisels. Gepubliseerde literatuur oor die omgewingskondisies wat lei na verhoogde mikrosistienproduksie is dikwels weersprekend en neem in vele gevalle nie al die relevante parameters in ag nie. Desnieteenstaande word omgewingstikstof, fosfor, temperatuur en lig, asook groeisnelheid, geïmpliseer in die regulering van toksieninhoud. Die doel van hierdie navorsing was dus om omgewingsfaktore (spesifiek stikstof en fosfor) en sellulêre aktiwiteite (spesifiek koolstoffiskering en die snelheid van stikstofopname en van groei) betrokke by die modulering van mikrosistienproduksie in M. aeruginosa te ondersoek in 'n poging om die rol van hierdie parameters te verstaan en om regulatoriese meganismes vir mikrosistienproduksie te identifiseer. In hierdie studie is aangetoon dat omgewingstikstof en fosfor sowel as groeisnelheid mikrosistienproduksie in M. aeruginosa ko-moduleer. Genoegsame fosfor word benodig vir fotosintetiese koolstoffiksering. Fosforopname deur M. aeruginosa korreleer sterk met die snelheid van koolstoffiksering. Alhoewel mikrosistieninhoud toegeneem het met 'n toename in die stikstof:fosfor verhouding in die kultuurmedium, was die mikrosistieninhoud onder kondisies van fosforlimitering laer ongeag die stikstofkonsentrasie. Hierdie waarneming, tesame met die noodsaak van gefikseerde koolstof vir stikstofassimilering, het gelei na 'n studie van die effekte van sellulêre koolstoffiksering and stikstofopname op die modulering van mikrosistienproduksie. Dit is gevind dat mikrosistienproduksie verhoog was wanneer die snelheid van stikstofopname relatief tot die snelheid van koolstoffiksering hoër was as die waarde wat benodig word vir gebalanseerde groei. Die sellulêre stikstof:koolstof verhouding waarbo mikrosistienkonsentrasies beduidend verhoog is stem ooreen met die Redfield verhouding vir gebalanseerde groei. 'n Ondersoek na potensiële reguleringsmeganismes waarby die sianobakteriële stikstofreguleerder NtcA betrokke is het gelei na die ontdekking van moontlike NtcA bindingseteis; dit kan dui op die repressie van die mikrosistiensintetase geengroepering. Onder kultuurkondisies is gevind dat die geen vir die polipeptiedsintetase module, mcyA, en ntcA omgekeerd uitgedruk word as 'n funksie van koolstofopname:stikstofopname potensiale. Geen toename of afname in mikrosistienproduksie kon egter gekoppel word aan óf glutamien, óf glutamaat, óf a-ketoglutaraat nie, metaboliete wat betrokke is by die regulering van ntcA. Die rol van NtcA in die regulering van mikrosistienproduksie kon dus nie bevestig word nie. Die gevolgtrekking is dus gemaak dat mikrosistienproduksie metabolies gereguleer word deur die C:N balans en die spesifieke groeisnelheid. Die primêre belang van stikstof en koolstof is gedemonstreer deur 'n eenvoudige model waarin slegs stikstofopname, koolstoffiksering en groeisnelheid gebruik word om mikrosistienvlakke te voorspel. Die model verklaar ook resultate wat tevore in die literatuur beskryf is. Soortgelyk is 'n artifisiële neurale netwerkmodel gebruik om te toon dat die afhanklikheid van koolstoffiksering van fosfor akkurate voorspelling van mikrosistienvlakke gebaseer of groeisnelheid en omgewingstikstof en fosfor moontlik maak.

Contamination of recreational and shellfish waters with fecal pollution is a major water quality issue with associated economic impacts and human health risks. Reliable fecal source identification and rapid, quantitative analyses are essential components of risk assessment. Enteric bacteria that are endemic to specific hosts have a potential role as public health indicators of fecal pollution. Building on previous work to discriminate ruminant and human fecal contamination, we cloned class Bacteroidetes 16S rRNA genes from pig, elk, dog, cat, and seagull fecal DNAs. Unique restriction patterns were identified among clones from each of the host species using Terminal Restriction Fragment Length Polymorphisms (T-RFLP). Clones exhibiting unique patterns were sequenced and analyzed phylogenetically, along with human, horse, and cattle sequences recovered from previous work. The analysis revealed both endemic and cosmopolitan (global) host distributions. The sequence data were used to identify host-specific genetic markers for pig and horse feces, and to design PCR primers that identify these sources of fecal pollution in water. There was a high degree of sequence overlap among the fecal Bacteroidetes of wild and domestic ruminants, and among human, domestic pet, and seagull Bacteroidetes. We compared fecal Bacteroidetes rRNA genes from these hosts using subtractive hybridization, a method that identifies differences between closely related genomes or gene sequences. A Bacteroidetes rDNA marker that distinguishes elk and cow feces was identified, as well as a host-specific marker for dog fecal Bacteroidetes. The four newly designed PCR primers were tested for specificity and sensitivity, and the dog primer was successfully used, along with the human and ruminant-specific primers, in a collaborative study comparing fecal source tracking methods. We also developed a real time Taq nuclease assay for quantification of fecal Bacteroidetes 16S rDNA, and compared it with an EPA-approved enumeration method for the current standard public health indicator, Escherichia coli, in serial dilutions of sewage primary influent. There was a strong, positive correlation between the methods, and the Taq nuclease assay was sensitive and much more rapid than the E. coli assay. PCR source identification and enumeration of fecal Bacteroidetes 16S rDNA show promise for application in a health risk-based analysis of fecal pollution. / Graduation date: 2005

The extent of agricultural drainage has created concern for its potential undesirable effects on surface water quality. Land applications of liquid manure on tile drain fields have the potential to transport solutes and bacteria to the drains following precipitation or irrigation events and many times are directly sent to a surface water body, and have been documented as a source of contamination of surface waters. This study determined the potential for and magnitude of E. coli and solute migration to tile drains through the soil profile. Water from subsurface drains was analyzed for chemical and bacterial composition following tracer applications. Two sites were selected for the study to determine transport at large (field) and small (plot) scales. At the large-scale site, both tracers, bacteria (E. coli and Total Coliform) and Amino-G (a conservative tracer), were used to monitor the speed of transport from the surface to the tile drain following liquid manure applications, tracer applications and additionally precipitation events. The concentrations of E. coli were monitored every hour for 76 days during the spring. Both tracers, bacteria and Amino-G, were detected in the tile drainage shortly after precipitation events. The peak concentration of E. coli was observed to be 1.2 x 10⁶ CFU/l00mL. These elevated concentrations of E. coli might be attributed to the characteristics of the soil, high organic matter and well-structured clay soils. Both the rapid breakthrough of tracer to the tile drain and the peaks of tile water temperature during precipitation events provided evidence of macropore flow. Antecedent soil moisture and warmer temperatures appeared to provide ideal conditions for bacteria growth. The small-scale study site was selected for a more focused study. The purpose of this site was to quantify more accurately the percent mass of surface applied tracer that was transported to the tile drain, allowing mass balance calculations. Experiments were conducted during the summer to control the rate and total amount of irrigation. Amino-G readings were taken every 10 seconds for 125 hours of continuous irrigation. Tracer applications were conducted at runoff and non-runoff conditions. Both types of tracer applications had Amino-G breakthrough in less than 10 minutes after initiation of irrigation. Tracer applied at runoff rates resulted in 4 to 17 times more total tracer mass migrating to the tile drain than when applied at non-runoff rates. The total mass of Amino-G migrating to the tile drain during non-runoff conditions depended on the total volume of applied tracer, regardless of the tracer concentration. For an application of 5.6 mm at 12 mg/L, 5.7% of the total applied tracer migrated to the tile drain, whereas for an application of 1.9 mm at 27.7 mg/L only 2.8% of the total applied tracer migrated to the tile drain. Tile flow response to irrigation experiments appeared to be governed by soil moisture. Lysimeter samples were taken continuously every 4-8 hours until the 94th hour after tracer application. Tile water concentrations were consistently greater than concentrations found in the deeper suction lysimeters at corresponding times, providing further evidence of preferential flow. E. coli transported through the soil and into the drains were demonstrated to be event-driven by precipitation events and irrigation events. In addition, the characteristics of this type of soil - the high clay content, the well-defined structure, the high level of organic matter and rich biological activity has been known to enhance the preferential pathways and transport processes in the soil profile, resulting in rapid transport of surface applied solutes and effluents to tile drains. / Graduation date: 2003

Copano Bay currently exceeds fecal coliform Texas Surface Water Quality Standards for oyster water use. Aransas and Mission River Tidals currently exceed enterococci water quality standards for contact recreation use. The fecal coliform Copano Bay Bacterial Loadings Model will be used to support the TCEQ Total Maximum Daily Load (TMDL) program to develop the TMDLs for the three impaired water segments. The objectives of this research are to identify the major bacterial sources in the Copano Bay watershed, to calculate the total bacterial loadings (i.e., the TMDLs) from these sources, and to estimate the load reductions needed to bring each of the impaired segments into compliance with water quality standards. The potential bacterial sources that were considered in the model were wastewater treatment plants (WWTPs), waterbirds, livestock, failing septic systems, and other non-point sources that originate from different types of land uses (e.g., urban, forest, etc.). This thesis presents an analysis of the existing bacterial monitoring dataset for fecal coliform, including spatial and statistical analysis of the bacterial monitoring data, an estimation of fecal coliform loadings (the input into the models), including non-point and point source calculations, and a description of bacterial transport of fecal coliform from the sources in the watersheds, rivers, and Copano Bay using the model, including explanations for how the model parameters were determined. The main assumptions used in the model were that the fecal coliform bacteria decay (first-order reaction rate) in watersheds and along streams and channels, and Copano Bay is divided up into four Continuous Flow, Stirred Tank Reactors (CFSTRs). The results of the research include the modeled median fecal coliform concentrations throughout the watershed, the impact of different bacterial sources on each of the water segments in Copano Bay watershed, and the load reductions needed (and from what sources) to meet fecal coliform water quality standards. Cattle were determined (based on model results) to be the largest fecal coliform contributor of fecal coliform in Copano Bay. / text

According to the U.S. Environmental Protection Agency, 174 of Indiana's 428 waterbodies were listed as impaired for Escherichia coli (E. coli) in 2002. This study determined the severity of E. coli contamination and assessed the impacts of landuse on E. coli concentrations in three subwatersheds. Samples were collected and E. coli analyzed using the Coliscan Easygel method. Geographic information system analyses were used to determine impacts of spatial parameters on E. coli concentrations. Sixty-seven percent of the 162 samples exceeded the USEPA recreational water quality standard. Escherichia coli concentrations were significantly related to the ratio of five-and thirty-meter impervious surface buffer, density of septic systems, and the presence of inadequately drained soils. Confined feeding operations and combined sewer overflows also resulted in elevated E. coli concentrations. Human activity in urban areas had substantial impacts on these concentrations, impacts that can be minimized through proper management. / Department of Natural Resources and Environmental Management

Thesis (M.S.)--Humboldt State University, 2007. / Includes bibliographical references (leaves 24-25). Also available via Humboldt Digital Scholar.

Thesis (MSc (Paraclinical Sciences, Veterinary Science))--University of Pretoria, 2007. / Includes bibliographical references. Also available in print format.

Thesis (M.Sc. Biology)--University of Waikato, 2009. / Title from PDF cover (viewed Apr. 22, 2010). Includes bibliographical references (p. 35-47, 104-120)