Thesis (Ph. D.)--Joint Program in Biological Oceanography (Massachusetts Institute of Technology, Dept. of Biology; and the Woods Hole Oceanographic Institution), 2005. / Includes bibliographical references.

Thesis (Ph. D.)--Florida State University, 2006. / Advisors: Don R. Levitan and Thomas E. Miller, Florida State University, College of Arts and Sciences, Dept. of Biological Science. Title and description from dissertation home page (viewed Sept. 22, 2006). Document formatted into pages; contains xi, 110 pages. Includes bibliographical references.

The subtidal whelk Burnupena papyracea (Brugière) co-occurs with a voracious predator, the rock lobster Jasus lalandii (Milne Edwards), in situations where other potential prey are largely eliminated. This has been ascribed to a symbiotic bryozoan, Alcyonidium nodosum (O’Donoghue and de Watteville), which characteristically encrusts the shells of B. papyracea and deters feeding by Jasus. In this study it is shown that this is not due to physical effects of either induced physical defences in the bryozoan or increased shell strength due to the presence of the bryozoan. Neither spectroscopic screening of chemical extracts of the bryozoan nor analysis for volatile constituents revealed any apparent chemical components that are likely to deter feeding. Chemical extracts also failed to show larvicidal effects in a standard toxicity assay using the brine shrimp Artemia salina (Leach). Despite this, bioassays using individual Jasus indicated a chemical basis for feeding deterrence. The assays were run separately on three sets of Jasus and some repeats of assays gave contradictory results. However, assays showing no significant effect of treatment occurred with moulting Jasus, involved very low overall feeding rates and so gave a less convincing result. In other assays Jasus always avoided Burnupena papyracea with live Alcyonidium encrusting the shell, and food pellets containing Alcyonidium or an Alcyonidium extract. Significant preferences were shown for an unencrusted whelk, B. cincta (Röding), over B. papyracea; for B. papyracea with the bryozoan scraped off over natural B. papyracea; for B. papyracea on which the bryozoans had been killed with liquid nitrogen over untreated B. papyracea; and for food pellets prepared from ground, dried mussel over pellets prepared with dried mussel mixed with A. nodosum or its crude organic extract. It is concluded that the protection which Alcyonidium confers on Burnupena papyracea does have a chemical basis, but that the chemical responsible is either present in only trace quantities, or that it is a structurally unremarkable compound which is distasteful to Jasus. This work highlights both the advantages of using ecologically relevant bioassays (positive results when standard techniques give a negative result) and also the disadvantages (logistic constraints on sample sizes when using large test animals and individual variability in a relatively sophisticated test animal).

The objectives of this study were to characterise macrozoobenthic community structure of the western sector of Algoa Bay, to identify the drivers of community structure and to develop a long-term monitoring framework. Data were collected from six study sites stratified along-shore. Each site comprised three stations; most sites were located in areas directly influenced by anthropogenic activities such as inflow from storm water drains and areas where dredged spoil was dumped. Other sites included areas in close proximity to estuary mouths. Physico-chemical parameters of the water column were measured with a YSI instrument, sediment for faunal and physico-chemical analyses was sampled with a Van Veen grab, and collected macrofauna were sedated and preserved pending analysis. In the laboratory, macrofauna were identified to finest taxonomic resolution possible under dissecting and compound microscopes, and enumerated. Sediment samples for physico-chemical analyses were kept frozen pending analysis. Up to 187 species belonging to 137 genera and 105 families were identified. Univariate community parameters such as abundance and number of species varied significantly along-shore, generally increasing towards less wave-exposed sites. Multivariate analyses revealed that community assemblages were heterogeneously distributed along-shore, corresponding to areas where anthropogenic influences such as effluent discharge and commercial harbour activities prevailed. During the 2008 survey, species assemblages separated into six groups corresponding to the six sites but xvii during the 2009 survey, species assemblages separated into four groups probably due to changes in environmental parameters such as the hydrodynamic regime. In both surveys the assemblage opposite a drainage canal (Papenkuils outfall) was distinct as it was dissimilar to all other assemblages. This site was also heterogeneous over relatively small spatial scales. Important physico-chemical variables influencing community structures during the 2008 survey included bottom measurements of temperature, salinity, dissolved oxygen, coarse sand and mud. During the 2009 survey, only bottom temperature and mud content were identified as important physico-chemical variables structuring community assemblages. The principal variable was probably the hydrodynamic regime, driving community structure at a larger scale in Algoa Bay. On a localised scale, communities were probably structured by other factors such as effluent discharges, influence of estuary mouths and activities associated with the harbour. With a lack of information on keystone species (regarded as good monitoring species) in Algoa Bay, it was proposed that groups that cumulatively comprise 50–75 percent of total abundance within communities be monitored annually. Included are amphipods, polychaetes, cumaceans, ostracods, tanaids and bivalves. It was also proposed that areas opposite estuary mouths, effluent outfalls and the dredged spoil dumpsite be monitored. This routine monitoring programme should be accompanied by periodic hypothesis driven research to assess the importance of stochastic events (e.g., upwelling) on macrozoobenthic community dynamics. Keywords: macrozoobenthos, soft-bottom, community assemblages, spatial distribution patterns, environmental drivers, long-term monitoring framework.

No description available.

The aim of this thesis has been to: 1) assess the state of pollution in the two study areas and relate them to recent changes found in the Kattegat - Belt Sea area; 2) examine the observed spatial and temporal variability in species composition, abundance and biomass in Arhus Bay and the Formes area and relate the variability to antropogenic and natural causes; 3) discuss and assess methods, particularly for the estimation of secondary production and the use of multivariate analyses as methods for examining changes in macrozoobenthic communities. Macrozoobenthos were sampled at 15 stations in Arhus Bay, Denmark from 1985 to 1991 while data from Formes (reference area) included 55 sampling stations from 1986 to 1990. Monthly sampling took place at one station in Arhus Bay in 1990 and 1991. The two study areas are both situated on the eastcoast of Jutland in the Kattegat - Belt Sea area at 13-17 m depth and both receive waste water from long sea outfalls. Although both areas are Subjected to salinity stratification for most of the year, the exposed position of the Formes area on the open Kattegat coast prevents it from suffering from severe oxygen deficiencies, unlike the Arhus Bay which is a sheltered, semi-enclosed sedimentation area where oxygen concentrations in the bottom water can be very low. At Formes the sediment is sandy while it is silty in Arhus Bay. The spatial and temporal variability in the benthos in Arhus Bay could to a great extent be explained by the variation in 7 important species: Abra alba, Corbula gibba, Mysella bidentata, Nepthys hombergii, N. ciliata, Ophiura albida and Echinocardium cordatum. The fluctuations in the number and biomass of A. alba had a pronounced effect on the total abundance and biomass in Arhus Bay. The severe winter of 1986/87 with low temperatures and oxygen depletion under the ice cover practically eliminated A. alba from the bay. A. alba quickly recolonized the area and was found in high numbers in 1988. Studies of growth of A. alba in 1990 and 1991 showed that by the end of 1990 the population had reached an average length of 10 mm while the average shell length was only 5 mm by the end of 1991. The difference between the two years could be attributed to the difference in sedimentation of phytoplankton from the water column. As in other parts of the Kattegat - Belt Sea area, Arhus Bay has experienced low oxygen concentrations in the bottom water in late summer early autumn throughout the 1980s. Only the oxygen depletion under the ice cover in early spring 1987 and the local oxygen deficiencies south of the outlet in 1989 and 1990 actually killed parts of the benthic fauna. Apart from 1981, the oxygen deficiencies have thus been less severe in Arhus Bay than in other parts of the southern Kattegat in the 1980s. The number of species, abundance and biomass decreased at Fornres from 1980 to 1985 while the discharge of BOD was fairly constant during the same period. From 1986 there was a slight decrease in the discharge of BOD but a considerable increase in the number of species, abundance and biomass. At least for the second half of the 1980s there was no straightforward relation between the organic enrichment from the outlet and species composition, abundance and biomass and suggests that other factors are also important influencing the fluctuations in the benthic fauna. Estimates of total secondary community production were found to be very dependent on the method used. The method described by Brey (1990) was found acceptable for estimating secondary production in Arhus Bay but care should be exercised when comparisons are made with other areas where different methods have been used to estimate production. Secondary production was estimated more accurately for some of the abundant species in Arhus Bay on the basis of monthly samplings by the method described by Crisp (1984). Among the multivariate analyses the Detrended Correspondence Analysis (DCA) and nonmetric Multidimensional Scaling (MDS) proved to be the most successful with the Arhus Bay and Fornes data sets. Two Way INdicator SPecies ANalysis (TWINSPAN) did not work well with the Fornes data because it imposed discontinuities on data sets with continous variation in distribution of species among samples. As community types existed to a certain degree in Arhus Bay TWINSPAN worked well with these data. DCA and MDS were found to be useful techniques for analysing large data sets because they can summarize the data matrices to a manageable form and find possible patterns in the data sets. The results of the analyses can then be used as starting point for more detailed investigations of single species/samples or groups of species/samples. By using different transformations of the raw data the role of dominant or rare species can be assessed. A major 'problem in the assessment of multivariate techniques is the lack of external standards to compare with. The results of multivariate analyses must therefore be assessed critically on the basis of a careful examination of the species list combined with the knowledge and experience of the investigator. The methods used all had their advantages and limitations but each of the different methods added some important information to the picture of the benthic community in Arhus Bay and Fornes. It was thus an considerable advantage to use several different methods to analyse the spatial and temporal variability in the benthic fauna in relation to antropogenic and natural causes.

Thesis (M. Phil.)--University of Hong Kong, 1999. / Includes bibliographical references (leaves 104-118).

Effects of 4-inch (10.16 cm) suction dredge mining on benthic macroinvertebrates in 3rd to 4th order streams were investigated in 1996 by evaluating four mining claim operations in Althouse Creek, Sucker Creek, and Taylor Creek in southwestern Oregon's Rogue River basin. The effects were site-specific. The study showed no significant (p>0.05) differences between treatment and control areas in density and species diversity of benthic macroinvertebrates. However, mean taxa richness significantly (p<0.05) increased thirty days following the end of the mining period. Collector-filterers were significantly (p<0.05) lower in dredged areas thirty days after the mining season. Because of constraints in sampling design, sample sizes and relatively small treatment areas, the results from this study are tenuous at best. There were apparent inherent differences in species dominance among sites possibly a result of differences in stream size and riparian conditions. This further confounds results of this study. / Graduation date: 2000

Thesis (M.S.)--University of North Carolina at Wilmington, 2003. / Vita. Includes bibliographical references (leaves : [37]-40).

Thesis (Ph.D.)--Murdoch University, 2007. / Thesis submitted to the Faculty of Sustainability, Environmental and Life Sciences. Includes bibliographical references (leaves 249-274)