Thesis (M.S.)--West Virginia University, 2006. / Title from document title page. Document formatted into pages; contains x, 105 p. : ill. (some col.), col. map. Includes abstract. Includes bibliographical references.

X-disease, caused by phytoplasmas, is one of the destructive diseases in stone fruit trees, causing yield loss and poor fruit quality. So far no effective methods are available to control X-disease. X-disease resistance has been first discovered in chokecherry (Prunus virginiana, 2n=4x=32), which is a native woody species of North America. To identify molecular markers linked to X-disease resistance, simple sequence repeat (SSR) markers were used to construct genetic linkage maps for chokecherry and to identify markers associated with X-disease resistance in chokecherry. In this research, three segregating populations of chokecherry were developed by crossing one X-disease resistant (CL) with three susceptible chokecherry lines (a, c, and d), of which the progenies were 101, 177, and 82, respectively. In order to construct a genetic map for chokecherry, 108 pairs of SSR primers were employed from other Prunus species. Additionally, a set of 246 SSRs were developed from chokecherry sequencing by Roche 454 sequencing technology. A total of 354 pairs of SSR primers were used to screen individuals of all three populations. Two software programs, TetraploidMap and JoinMap, were used to construct linkage map based on single-dose restriction fragments (SDRFs) and two parental linkage maps were generated for each population from both software programs. Bulked segregant analysis (BSA) was applied for identification of X-disease resistance markers. As a result, one SSR marker was found to be linked to the X-disease resistance. The set of 246 chokecherry SSRs was later used to test transferability among another 11 rosaceous species (sour cherry, sweet cherry, wild cherry, peach, apricot, plum, apple, crabapple, pear, june berry, and raspberry). As a result, chokecherry SSR primers can be transferable in Prunus species or other rosaceous species. An average of 63.2% and 58.7% of amplifiable chokecherry primers amplified DNA from cherry and other Prunus species, respectively, while 47.2% of amplifiable chokecherry primers can be transferable to other rosaceous species. The genetic information, including genetic map, disease linked marker, chokecherry sequence, and confirmed transferability of the identified chokecherry SSRs to other species, will benefit the genetic research in Prunus and other rosaceous species.

Ozone is known to be the most widespread phytotoxic air pollutant. Ozone causes visible injury, reductions in photosynthesis, growth, and yield. Plant response to ozone may vary with species, varieties, and physiological age. Comparison between sensitive and tolerant cultivars has a key role in assessing ozone damage, investigating the sites of cellular injury, and identifying ozone tolerance mechanism. The objectives of this study were to investigate the effects of high ozone concentration (200 ppb) as well as ambient ozone concentrations (under field conditions) on net CO2 assimilation and PSII function in plants with different sensitivities to ozone. Two species of plants, tobacco (Nicotiana tabacum L.) and black cherry (Prunus serotina) were studied. Gas exchange analysis and chlorophyll fluorometry were utilized to characterize physiological function. Two tobacco cultivars, Bel-B and Bel-W3, tolerant and sensitive to ozone, respectively, were grown in a greenhouse supplied with charcoal filtered air and then exposed to 200 ppb ozone for 4hr. Effects on chlorophyll fluorescence, net photosynthesis, and stomatal conductance are described. Quantum yield was calculated from chlorophyll fluorescence and the initial slope of the assimilation-light curve measured by the gas exchange method. Only the sensitive cultivar, Bel-W3, developed visible injury symptoms involving up to 50% of the 5th leaf. The maximum net photosynthetic rate of ozone-treated plants of the tolerant cultivar was reduced 40% compared to control plants immediately after ozone fumigation; however, photosynthesis recovered by 24 hr post fumigation and remained at the same level as control plants. In the sensitive cultivar, on the other hand, ozone exposure reduced maximum net photosynthesis up to 50%, with no recovery, apparently causing permanent damage to the photosystem. Reductions in apparent quantum efficiency, calculated from the assimilation-light curve, differed between cultivars. Bel-B showed an immediate depression of 14% compared to controls, whereas Bel-W3 showed a 27% decline. Electron transport rate (ETR), at saturating light intensity, decreased 58% and 80% immediately after ozone treatment in Bel-B and Bel-W3, respectively. Quantum yield decreased 28% and 36% in Bel-B and Bel-W3, respectively. It can be concluded that ozone caused a greater relative decrease in linear electron transport than maximum net photosynthesis, suggesting greater damage to PSII than the carbon reduction cycle. Two different sensitivity classes of black cherry, tolerant and sensitive, growing under natural environmental conditions in Giles County, VA were assessed for physiological responses to ambient ozone concentrations. Additional measurements were made at two other sites near Blacksburg. Leaf gas exchange rates and visible foliar injury were determined monthly during the growing seasons of 2000, 2001, and 2002 to characterize the relationship of injury to altered photosynthetic function. Ambient ozone levels were sufficient to induce visible symptoms which were highly correlated with a reduction in PnMAX (maximum net photosynthetic rate under saturating light conditions) and à CO2 (quantum yield for carbon reduction) only in sensitive black cherry. Electron transport rate (ETR) and quantum yield of PSII (à PSII) were also reduced in sensitive black cherry. Maximum photochemical efficiency (Fv/Fm) in sensitive trees was severely damaged by ambient ozone. There were positive correlations between increasing cumulative ozone concentration and substantial reductions in PnMAX and in à CO2 of sensitive trees compared to tolerant trees. There was a negative correlation between chlorophyll content and percent leaf injury in sensitive black cherry / Ph. D.

Repeated partial cutting in the Appalachian hardwood region has often favored the development of tolerant species like American beech (Fagus grandifolia Ehrh.) and stands with a high proportion of cull trees. Crop tree release is a widely recommended practice to improve species composition and growth rates in these unevenaged structured stands. Chemical control offers some distinct advantages from the standpoint of safety and residual stand damage, over mechanical methods. Control of American beech was the primary focus of this study. Beech is a low value timber tree, normally considered difficult to control. It is a major competitor to more valuable trees, especially on better sites in the Appalachians. Research plots were established in hardwood stands at three sites in central West Virginia to evaluate the effectiveness of glyphosate (Accord), imazapyr (Arsenal AC and Chopper), and triclopyr (Garlon 3A and Garlon 4) using the hack-and-squirt application method and low volume basal spray treatments. In the injection treatments .051 fl oz (1.5 ml) of solution was used per inch of diameter (dbh). The basal spray treatments used 0.101 fl oz (3 ml) of solution per inch of diameter. The following concentrations were used: Accord (65.2%), Arsenal AC (7.5%), Garlon 3A (50%), Garlon 4 (26.25%), and Chopper (6.25% ). These concentrations were determined by using the highest costing injection and basal treatment at the lowest recommended labeled rate as standards, Garlon 3A and Chopper respectively. Eighteen 0.1 acre plots were systematically located at each study site where crop trees were present and to maximize the number of American beech on each plot. Crop trees, mostly black cherry (Prunus serotina Ehrh.) were chosen on a 0.025 acre subplot established at each plot center. All beech two inches and larger on the 0.1 acre plots and competing trees touching crop trees were treated in June 1998. The treatments were evaluated in September of 1998 and again in June of 1999. A numerical rating system ranging from 1-7, (0-100% crown affected), which utilized visual symptoms, was used to evaluate the efficacy of each treatment. Trees receiving a rating of 5 (75 % crown control) or greater were considered controlled. The relationship between the kinds of herbicide, application method, and numerical rating were analyzed by means of one-way analysis of variance with an incomplete random factorial design. The most effective treatments for the three month evaluations were the Accord and Garlon 3A injection treatments. Average beech crown control ranged from 95-99% for Accord to 96-99% for Garlon 3A across all study sites. The basal spray treatments were not effective. Average crown control ranged from 1-22%, across all study sites. Accord, Garlon 3A, and Arsenal AC were the most effective treatments for the 12 month evaluations, with average beech crown control ranging from 99-100% across all study sites. The imazapyr treatments (Arsenal Ac and Chopper) had adverse effects on the crop trees and are not recommended for hardwood crop tree release. The cost effectiveness based on treatment costs and the amount of basal area (BA) controlled were averaged for all study sites. The average treatment costs based on the 12 month evaluations expressed in dollars/ft2 BA controlled were as follows: Accord ($0.91), Garlon 3A ($1.04), Arsenal AC ($0.84), Garlon 4 ($15.09), and Chopper ($7.74). NE-TWIGS was used to predict future composition and value of the projected stands. The stem injection treatments decreased the amount of beech and increased the amount of black cherry sawtimber thereby dramatically increasing the future value of the stands. Real rates of return were calculated for the stem injection (8.81%) and low-volume basal spray (-0.81%). / Master of Science