Antral mucosal biopsies were examined microbiologically and histologically for the presence of Campylobacter pylori in 224 patients with upper gastrointestinal symptoms. One hundred and eighty three (83%) patients were found to harbour Campylobacter pylori in their gastric mucosa. Campylobacter pylori was strongly associated with the presence of histological gastritis (93%) and was detected in only 10% of 30 patients whose gastric biopsies showed normal histology. Endoscopically diagnosed duodenal lesions were more strongly associated with the presence of Campylobacter pylori than were gastric lesions (p<0.001). A variety of laboratory methods were evaluated to determine the sensitivity and specificity to detect the presence of Campylobacter pylori. Histology was the most sensitive and specific method to detect the presence of Campylobacter pylori. Although culture was highly specific, it was less sensitive than histology in detecting Campylobacter pylori in gastric antral mucosal specimens. The "conventional" gastric urease assay, although specific, needs be performed under controlled conditions (37°C) for optimal results. The "one-minute" urease assay was more sensitive than the "conventional" gastric urease assays and was highly specific. ELISA to detect specific-IgG antibodies to Campylobacter pylori was a moderately sensitive non-invasive method to detect Campylobacter pylori infection, but was non-specific. / Thesis (M.Med.)-University of Natal, 1988.

This thesis describes the results of three studies that used different measures of bacterial numbers in retail ground beef (n=309) collected across different locations in Saskatchewan within a one-year period (May 2011 – May 2012). The measurements were compared among three sample categories: 1 - ground beef displaying government inspection information on the label legend (n=126), 2 - originating from facilities licensed by local health regions and thus not subjected to government inspection (n=80), or 3 - processed and repackaged at the retail level thus carrying no government inspection information on the label (n=103). The first study reports baseline levels of bacteria in Saskatchewan retail ground beef as measured by traditional (total aerobic plate count (TAPC) and total E. coli plate count (TEPC)) and culture-independent methods (estimate of total bacterial load (TBL) by real-time quantitative polymerase chain reaction). After accounting for season and whether the samples were fresh or frozen at purchase, the lowest TAPC (log10 4.9 culture forming units per gram (cfu/g); 95% CI log10 4.7 to log10 5.1 cfu/g), TEPC (log10 0.58 cfu/g; 95% CI log10 0.39 to log10 0.77 cfu/g), and TBL in frozen ground beef (log10 4.5 target copies per gram (tc/g); 95% CI log10 4.0 to log10 4.9 tc/g) were observed in samples originating from federally regulated or provincially licensed facilities. In the second study, presence of known Enterobacteriaceae virulence factors (stx1, stx2, and eae) was detected by polymerase chain reaction (PCR) and compared between samples originating from three different regulatory and inspection environments as well as collected during different seasons of the year, and purchased fresh or frozen. One hundred and twelve out of all tested samples (n=308) were positive for the presence of at least one virulence marker with stx1 identified in 107 samples, stx2 - in 8, and eae - in 26. No significant associations were found between the virulence markers presence and sample category, state or season of purchase. The third study investigates the presence and diversity of Campylobacter spp. organisms in the same pool of 309 retail beef samples as detected by molecular methods. Fifty samples (16.2%) tested positive for Campylobacter genus-specific DNA in conventional PCR and 49 samples (15.9%) tested positive for at least one Campylobacter species DNA presence in real-time qPCR, but the crude agreement between the two methods was less than 50%. C. coli DNA presence was observed in 14 samples (4.5%), C. curvus – in 11 (3.6%), C. fetus – in 6 (1.9%), C. hyointestinalis – in 24 (7.8%), C. jejuni – in 12 (3.9%), C. rectus – in 6 (1.9%), and C. upsaliensis – in 9 (2.9%). There was no difference in the frequency of Campylobacter identified among the three sample categories, fresh and frozen, or samples purchased during the cold or warm season. These studies provide data on prevalence of bacteria in retail ground beef offered for sale in Saskatchewan and compare differences between samples presented to the consumer as originating from federally regulated or provincially licensed facilities, locally licensed facilities, or repackaged and processed directly at a retail outlet. The information on baseline levels of bacteria in retail ground beef and the comparisons among different categories can be used in prioritising food safety improvement efforts in Saskatchewan.

Campylobacter jejuni is an avian commensal bacterium and causes gastrointestinal diarrhea in humans called campylobacteriosis. Campylobacteriosis is acquired by consumption of undercooked poultry contamined with C. jejuni. Poultry can become colonized from contaminated drinking water. The chicken flock and drinking water of 4 poultry farms in Ontario were sampled and the prevalence of C. jejuni in these flocks was determined to be 16.7% over a 1 year sampling period. We determined that contamined- water was a significant risk factor for Campylobacter-positive flocks from flaA typing, PFGE analysis, and genomotyping several isolated strains. Free living amoebae, such as Acanthamoeba species, live in the drinking water of poultry farms. It is hypothesized that Acanthamoeba in the drinking water of poultry farms can take up and act as environmental reservoirs of C. jejuni. Acanthamoeba species were isolated from the drinking water. Acanthamoeba strains were found to act as a vehicle for protection, persistence and growth of C. jejuni isolated from the farm water. The transcriptome of both C. jejuni and A. castellanii during the initial stages of C. jejuni internalization were described by RNA-seq. C. jejuni oxidative defence genes (such as katA, sodB, fdxA) and some other unknown genes (Cj0170, Cj1325, Cj1725) were found to be essential in the interaction with A. castellanii. Our findings suggest that Acanthamoebae act as a C. jejuni reservoir and could be a contributing source of C. jejuni in the environment. Through transcriptomics studies, we have begun to uncover some genetic clues involved in this interaction.

Thesis (Ph.D.)--Auburn University, 2005. / Abstract. Vita. Includes bibliographic references (ℓ. 105-133)

Zugl.: Berlin, Freie Universiẗat, Diss., 2006.

Thesis (M.Sc.) -- Hawkesbury Agricultural College, 1985. / "A thesis submitted to Hawkesbury Agricultural College in partial fulfilment for the Degree of Master of Applied Science."

Thesis(M.S.)--Auburn University, 2006. / Abstract. Vita. Includes bibliographic references.

Thesis (Ph. D.)--Auburn University. / Abstract. Vita. Includes bibliographical references (p. 151-172).

Thesis (M.S.)--Virginia Polytechnic Institute and State University, 1992. / Vita. Abstract. Includes bibliographical references (leaves 37-38). Also available via the Internet.

Zugl.: Berlin, Freie Universiẗat, Diss., 2009.