There is a need for a refined understanding of large carnivore prey preference and carrying capacity (K). To date, K estimates for large carnivores have been developed from predictions of carnivore diet at a prey and predator species-level. These predictions therefore assume that all social classes within a carnivore species display similar prey preferences and that all demographic classes within a prey species are equally preferred or avoided. The objective of this study was to investigate the importance of including prey demographics and carnivore social class in carnivore diet descriptions and thereby K estimates, using cheetah Acinonyx jubatus as a study species. It was predicted that prey sex, prey age and cheetah social class influence cheetah prey preferences, when they influence the risk and ease of prey capture, and that their inclusion in a K model would improve its predictive strength. Based on an analysis of 1290 kills from South Africa, male coalition cheetah were found to prefer a broader weight range of prey than solitary cheetah. Prey demographics further influenced cheetah prey preference, when it corresponded to differences in prey size and the presence of horns. The current species-level K regression model for cheetah is based on preferred prey and thus omits highly abundant antelope that often comprise the majority of the diet, an artefact of the way in which preferences are calculated. A refinement of the species-level K regression model, to account for prey demographic- and cheetah social class-level differences in diet and the biomass of accessible prey (defined in this study as all non-avoided prey) instead of just preferred prey, doubled the predictive strength of the K model. Because group-hunting enabled predation on a broader weight range of prey, cheetah K was influenced by the ratio of male coalition cheetah to solitary cheetah in the population. The refined K regression model is derived from ecosystems supporting an intact carnivore guild. A mechanistic approach to estimating K, based on Caughley‟s (1977) maximum sustainable yield model, therefore better predicted cheetah K in systems devoid of lion Panthera leo and African wild dog Lycaon pictus, which were found to suppress cheetah density. This study improves our understanding of the relationships between prey demographics, cheetah social classes and intra-guild competition in determining cheetah prey preferences and K. This study therefore paves the way for similar work on other large carnivores.

Lethal carnivore management, aimed at reducing carnivore impacts, threatens the persistence of carnivores globally. The effects of killing carnivores will depend on their life histories and social structures. Smaller canids, like black-backed jackals (Canis mesomelas), are highly adaptable and display variable population-level responses to mortality sources, which may contribute to their success in fragmented landscapes. Jackals, the dominant predator of livestock in South Africa, are widely hunted to reduce this predation. This hunting is heterogeneous across the landscape, focussed on livestock and game farms, with nature reserves acting as refuges. The aim of this research was to investigate the ecology and population dynamics of jackals in response to heterogeneous anthropogenic mortality. I hypothesized that the spatial variation in hunting results in the formation of a source-sink population structure, which contributes to the persistence of jackals. I addressed this hypothesis by evaluating two criteria, essential for the formation of a source-sink system in larger mammals. Firstly, I confirm that hunting pressures result in the formation of distinct subpopulations with asymmetrical dispersal (i.e. compensatory immigration) from unhunted reserves to neighbouring hunted farms. Secondly, I show that jackal subpopulation display asynchronous demographics, with farm populations displaying a relatively younger age structure and an associated increase in reproductive output (i.e. compensatory reproduction). This confirms the formation of a hunting-induced source-sink system. additionally, I show that jackals have a catholic diet, which confers a level of adaptability to direct (anthropogenic mortality, prey provisioning) and indirect (alteration in prey base) habitat modifications. This dietary flexibility allows jackals to obtain the appropriate resources to achieve reproductive condition. The relatively better body condition of younger jackals in sink habitats allows for compensatory reproduction which contributes to the success of jackals on hunted farms. Based on my findings, I hypothesize that the compensatory life history responses of jackals to anthropogenic mortality may be ascribed to two interconnected mechanism. Dispersal is presumably driven by density-dependent interference competition, as dominant territorial pairs outcompete subordinates in high-density reserve areas, forcing them to disperse onto low-density farms (i.e. ideal despotic model). Additionally, farms likely represent attractive habitats, owing to a reduction in conspecifics and a concomitant increase in resource availability (including anthropogenic resource provisioning). Therefore, dispersing subordinates presumably select for farms which are perceived as good quality habitats, as the high risks of anthropogenic mortality cannot be perceived by dispersing individuals. This results in the formation of an attractive sink or ecological trap. These compensatory processes will continue to counter population management actions as long as recruitment from unmanaged areas persists. This hypothesis provides a conceptual framework for future research directions in understanding jackal persistence and management (i.e. specifically focussing on controlling dispersal) of jackal populations.

Determining carnivore diets and how they may change over time is important if the management of large carnivores is successful in an enclosed reserve. Carnivore diets are known to shift over time in response to a variety of factors. These factors include prey availability and climatic conditions (rainfall patterns). The re-introduction of lions (Panthera leo) and spotted hyaena (Crocuta crocuta) to Addo Elephant National Park (AENP), South Africa provided the opportunity to study diet trends of lions and spotted hyaena in an enclosed system. The study focused on the diets and overlap of lions and spotted hyaena and how their prey selection changed since their re-introduction in 2003 to 2010. The database included scats collected over a seven year period. A total of 195 spotted hyaena scats and 217 lion scats were analysed using scat analysis. Prey items estimated from scat samples were coupled with prey availabilities to determine preferred prey items. Additionally, from determined carnivore diets, lions and spotted hyaena diet overlap was estimated over time. Lions preferred prey items which included zebra (Equus quagga) and eland (Tragelaphus oryx) during the early portion of the study. Over time preference shifted to include buffalo (Syncerus caffer), bushbuck (Tragelaphus scriptus) and grey duiker (Sylvicapra grimmia). Spotted hyaena preferred zebra and eland in the earlier part of the study, then over time, shifting their selection to grey duiker, buffalo, red hartebeest (Alcephalus busephalus) and bushbuck. Lions and spotted hyaena had a similar diet which increased in overlap during the study (67 percentage - 91 percentage). Our findings suggest that lions and spotted hyaena had a degree of diet specialization; both carnivores avoided and preferred certain prey items relative to their abundance. Their preference excluded the most abundant prey items, thus causing a decline in abundance of rarer species over time. Lions and spotted hyaena did not respond by shifting their diets to consume abundant prey items when their preferred prey items declined in availability. However, this study may be a snap-shot of carnivore’s diet trends. Thus further monitoring of the large carnivore diets should be researched in order to determine which factors drive their prey selection. Additionally, lions and spotted hyaena diet overlap increased overtime. The high diet overlap may be a result from spotted hyaena scavenging off lion kills, thus spotted hyaena diets may be facilitated by lion kills. Finally our data suggests that re-introduced large carnivores in AENP are likely to change the composition of the overall mammal community, potentially eliminating rare but preferred prey species in an enclosed reserve.

A Dissertation submitted to the Faculty of Science, University of the Witwatersrand, in fulfilment of the requirements for the Degree of Master of Science Johannesburg, 2015 / The Chiniquodontidae is a family of Triassic carnivorous cynodonts well represented in the Middle-Upper Triassic of Argentina and Brazil. Chiniquodontids were more recently discovered in Madagascar and central Namibia, representing the only record of the family outside South America. The Namibian specimen was discovered in the Upper Omingonde Formation and is represented by the skull and a partial skeleton. The new chiniquodontid was identified as Chiniquodon and is diagnosed by the postcranial characteristics identified; a strong bend in the proximal portion of thoracic ribs, reduced curvature of the clavicle, although this may be due to deformation, robustness of the neck of the ilium, differences in the angulation between the edge of the posterior lamina of the ilium and the margin of the neck, and a large ischium, which is more than twice the size of the pubic plate. The postcranial material of the chiniquodontid from Namibia is described and compared with that of South American chiniquodontids. Chiniquodontids lack costal plates on ribs, show a tall and slender scapular blade, a large acromion process positioned well above the scapular neck and absence of disc-like phalanges in the autopodium. The Namibian Chiniquodon provides the first evidence of elements from the pes in chiniquodontids, and one of the few for non-mammaliaform cynodonts. Sedimentological studies confirm that the Upper Omingonde Formation of Namibia represents fluvial deposits of braided and meandering rivers formed in a predominately arid climatic regime during the Middle Triassic.

Although the leopard (Panthera pardus) is one of the more successful large carnivores, challenges for leopard conservation emulate those of other more endangered carnivores, and they are a model species for investigating issues affecting carnivore persistence worldwide. This thesis represents a six year study of leopard on the Karongwe Game Reserve, South Africa, which provided a unique opportunity to observe various aspects of behavioural ecology in the absence of prey availability constraints or human persecution. Small, enclosed reserves such as Karongwe make up 16.8% of the total land in South Africa and undertaking sound ecological research in these areas provides valuable data for evidence-based conservation and management. The leopard is notoriously shy and difficult to study and I used free darting and habituation to enhance visual observation, in order to understand the ecological processes influencing leopard reproductive success and survival. My results show that leopard in the high prey area studied, consume almost double the number of ungulates as leopard in similar habitats elsewhere. This generalist predator improved its hunting success by selecting vulnerable prey and selectively hunted in habitats of intermediate density, where preferred prey were most abundant. Ample nutrition played a key role in reproductive health and reduced the duration of reproductive parameters below that previously recorded in the literature. Any additional nutritional input could not translate into increased population growth as females were already reproducing optimally. Female territorial size and habitat selection were determined by the availability of riparian habitat and resources of their preferred prey. Territoriality however was governed by prey biomass. Neighbouring leopards were territorial, sharing little space (average 11% territorial overlap) and hunting five times more often in the core than in the rest of their territory. During periods of prey richness, females became more territorial and there was a positive “bottom up” effect through subadult recruitment. Density-dependent intraspecific and interspecific competition for limited space regulated the population around carrying capacity, and constrained population growth. These results provide fundamental baseline data about leopard in the absence of human disturbance, or prey constraints. They highlight that, although the influence of optimal nutrition is important in the reproductive health and territoriality of leopard, habitat quality and quantity are ultimately what govern leopard carrying capacity and population size. I provide baseline reproductive, carrying capacity and territorial data for agencies developing policy, and for setting priorities in conservation and management, as well as habitat protection and restoration, for not only this species but other threatened species as well. / Thesis (Ph.D.)-University of KwaZulu-Natal, Westville, 2013.

Human influence on the environment is becoming increasingly pervasive across the globe, and can drastically impact ecological patterns and processes. For many terrestrial wildlife species, human influence can fragment critical habitat, increase mortality, and threaten habitat connectivity and ultimately the persistence of wildlife populations. This dissertation aims to use multiple conservation ecology methods and tools to test the impact of human influence on the population dynamics of a large carnivore in a human-dominated landscape. To assess the impact of human activity on carnivore ecology, a series of empirical studies were conducted on a small population of American black bear (Ursus americanus) in the Western Great Basin, USA. A long-term dataset including geographic locations of animal habitat choices as well as mortality locations were used in multiple statistical models that tested the response of black bears to human activity. These analyses were conducted at multiple spatial and temporal resolutions to reveal nuances potentially overlooked if analyses were limited to a single resolution. Individual studies, presented as dissertation chapters, examine the relationships between human activity and carnivore ecology. Collectively, the results of these studies find black bear ecology to be highly sensitive to the magnitude and spatial composition of human activity in the Lake Tahoe Basin, observable at both coarse and fine spatial resolutions. The results presented in this study on the influence of human activity on large carnivore population dynamics allow for a more thorough understanding of the various ways common conservation ecology methods and tools can be used to evaluate human-wildlife relationships.

The impacts of human activities on the natural world have accelerated rapidly in recent centuries and decades. Consequent loss and fragmentation of natural habitats is the greatest threat to short and long-term survival of the planet’s rich biodiversity. Large carnivores are particularly sensitive to these changes, as many species rely on expansive natural areas to maintain healthy, genetically diverse populations. As a result, this charismatic clade is a focal point of conservation attention, and is also frequently used as a conservation umbrella to conserve other species which share their broad range of habitats. While diminished, fragmented populations and geographic isolation can be detrimental to species longevity, habitat corridors which connect populations throughout a broader human-dominated landscape provide resistance and resilience to the effects of isolation by maintaining genetic connectivity between sub-populations. Accordingly, understanding how large carnivores move through natural and non-natural landscapes to connect with other populations is a key area of research in movement ecology and conservation biology. In this dissertation, collaborators and I implemented open-source synthetic, comparative, and machine learning approaches to model the movement of tigers and jaguars, two ecologically vital and connectivity-dependent carnivore species, in regions of their ranges which are largely shared with humans. For Chapters 1 and 2, focusing on tigers in central India, we synthesized five independently derived layers of landscape resistance to derive consensus among existing research (Chapter 1) and comparatively test different movement simulation techniques’ abilities to predict tiger occurrence data (Chapter 2). We found that existing research efforts on habitat quality and potential connectivity areas for tigers in central India were more aligned than independent results indicated. We also derived a geospatial layer for “consensus connectivity areas (CCAs)” – areas where existing research agreed on high potential movement for tigers – and detailed the extensive current and future anthropogenic pressures on these important areas. Additionally, we found that while outputs from several popular techniques for simulating wildlife movement can predict in situ tiger occurrences, a circuit theory-based method, Circuitscape, performed best overall in this landscape and was the most robust to both inputs and validation data used for the analysis. In Chapter 3, we analyzed a collection of jaguar telemetry data to understand how the environmental responses of jaguar movements vary depending on the behavioral state of the animal. We found that jaguars in a higher (i.e., exploratory) movement state were more likely to move through anthropogenic areas, low tree cover, and areas farther from high tree cover. As similar, less risk-averse behavior has been reported in other carnivores during larger scale movements such as dispersal, these exploratory movement patterns may be a proxy for dispersal movement tendencies and thus more applicable for connectivity planning for jaguars, particularly in mixed-use landscapes. Collectively, this research provides insight into the movement ecology of two threatened large carnivore species as well as multiple open-source methodologies for modeling movement that can be applied to other research questions and conservation objectives worldwide.

Very little is known about the spatio-temporal ecology of the yellow mongoose Cynictis penicillata, despite this small carnivore being widely distributed in the southern African subregion. Until the present study, activity patterns and daily movement distances had only been investigated over a single season, and information on home range sizes was only available from a few populations. Here, I aimed at determining the activity patterns and the space use of yellow mongooses over the different seasons of the year in the Great Fish River Reserve (Eastern Cape, South Africa). In addition, I tested some predictions related to environmental factors (variations in photoperiod, climatic conditions and food availability over the year), as well as life cycle (reproduction) and morphological and physiological characteristics (sexual dimorphism and thermoregulatory aspects associated to the possession of an elongated body). From September 2005 to August 2011, spatio-temporal data were collected through 102 continuous tracking sessions (84 during the day and 18 during the night) of 12 adult individuals (seven males and five females) fitted with motion-sensor radio-collars. Additional data were obtained through semi-continuous tracking sessions and random locations. Yellow mongooses were essentially diurnal and crepuscular. Activity levels averaged 57 percent during the day (n = 11,807 fixes) and only 11 percent at night (n = 3,623 fixes). Yellow mongooses emerged from their burrows on average (± SD) 85 ± 62 min after sunrise (range: –11 to +369 min) and returned 21 ± 84 min before sunset (range: –518 to +225 min). The duration of the daily activity period varied between 12 min and 15 h 36 min, with a mean of 9 h 28 min. Both sexes exhibited some overground activity after sunset, but this was most pronounced in males than in females. Nocturnal activity outside the activity period was generally restricted to short underground bouts of activity occurring at anytime of the night. Diurnal resting, with up to 11 bouts per activity period, occurred in 98.8 percent of activity periods. Overall, yellow mongooses were active during 68 ± 17 percent of the time spent outside the burrow. Photoperiod acted as a zeitgeber and activity was negatively affected by adverse climatic conditions (very hot or conversely low temperatures, rain, wet soil) and probably low terrestrial arthropod activity/availability. No intersexual difference in activity levels was found, although the higher body mass of males (on average 16 oercent) implies higher metabolic demands. The total home range size (MCP 100 percent ) averaged 0.55 ± 0.65 km2 (range: 0.10–2.36 km2) and the related total perimeter measured on average 2.80 ± 1.71 km (range: 1.17–7.36 km). Male home ranges were on average more than twice large than those of females, but this difference did not reach statistical significance. However, males had larger daily home ranges (0.13 ± 0.15 km2) than females (0.05 ± 0.05 km2). In addition, daily movement distances of males were longer (1.99 ± 1.07 km) than those of females (1.29 ± 0.66 km). Males also travelled at a faster speed (0.29 ± 0.13 km/h) than females (0.18 ± 0.07 km/h). Overall, sex clearly appeared to play a role in the spatial ecology of yellow mongooses, but the underlying explanation does not seem to be linked to sexual dimorphism (body mass) or reproductive activity. Whilst the role of food availability on the space use of yellow mongooses is unclear, it is likely that low temperatures negatively affect yellow mongoose movements, as they do for their activity levels.