Cells interact with both tethered and motile ligands in their extra-cellular environment, which mediates, initiates and regulates a series of cellular functions, such as cell adhesion, migration, morphology, proliferation, apoptosis, bi-directional signal transduction, tissue homeostasis, wound healing among others. A fundamental understanding of the thermodynamics of receptor-mediated cell interaction is necessary not only from the aspect of physiology, but also for bioengineering applications, e.g. drug discovery, tissue engineering and biomaterial fabrication. Our models on free energy calculations of receptor mediated cell-matrix interactions supplement computational endeavors based on continuum mechanics. By incorporating conformational, entropic, solvation, steric effect, implicit and explicit interactions of receptors and extra-cellular ligand molecules, we can predict free energy, chemical equilibrium constant of binding, spatial and conformational distributions of biopolymers, adhesion force as functions of a set of key variables, e.g. surface coverage of receptor, interaction distance between cell and substrate, specific binding energy, implicit interaction strength, constraint in ligand’s conformation, size of motile nano-ligand, aggregation of receptors, sliding velocity relative to fluid. Our work has improved understanding of phenomena in cell-matrix interactions at both cellular and the molecular scales. / text

<p dir="ltr">Pancreatic ductal adenocarcinoma (PDAC) is the most common and lethal pancreatic cancer subtype. The silent tumor progression and aggressive development of chemo-resistance are the primary factors behind the dismal 13% 5-year survival rate. The tumor microenvironment (TME) has been the focus of many pancreatic cancer research since the TME actively interacts with cancer cells to promote tumor growth, drug resistance, and invasion. A thorough comprehension of PDAC cell and TME interaction is crucial to uncover the mechanism and key regulators behind PDAC’s rapid progression, high propensity for metastasis, and exceptional resistance to cancer therapeutics. Hydrogels have emerged as invaluable tools for investigating cell-matrix communication in three-dimensional (3D) environments, as their chemical and mechanical properties can be easily tuned to mimic the dynamic nature of native tissue. However, current biomimetic hydrogels used in PDAC models are elastic and often lack tissue-relevant viscoelastic properties, such as hysteresis and stress-relaxation. Stress-relaxation influences various cellular processes, including differentiation, proliferation, and cancer progression. This dissertation aims to address this gap by introducing viscoelasticity and fast stress relaxation into existing hydrogel platforms to more accurately replicate PDAC tissue mechanics. Specifically, we employ two chemistries: thiol-norbornene photopolymerization and boronic ester dynamic bonding to fabricate gelatin-based hydrogels. Gels formed solely via irreversible thiol-norbornene chemistry exhibit elasticity and slow stress-relaxation, while gels formed with both thiol-norbornene and reversible boronic ester bonds display viscoelastic properties and fast stress-relaxation. Cell-laden hydrogels with varying mechanical properties (low vs high stiffness, slow vs fast relaxation) were used as tools to explore the effects of matrix stiffening and viscoelasticity in promoting cancer aggressiveness. It was revealed that matrix stiffening, coupled with the inclusion of cancer-associated fibroblast induced the epithelial-mesenchymal transition phenotype (EMT) in pancreatic cancer cells. In addition, fast-relaxing hydrogels promoted cancer cell survival, growth, and EMT via engaging integrin β-1 (ITGB1). Blocking of ITGB1 receptors diminished cell growth, however, cells in fast-relaxing gels upregulated SNAIL1, a biomarker of poor cancer prognosis. Collectively, results from these studies describe our recent progress in understanding the mechanism by which stiff and viscoelastic substrates facilitate cancer development and how cellular functions can be controlled via modulating cell receptor-matrix binding.</p>

[Truncated abstract] Melanoma cell adhesion molecule (MCAM) is highly expressed in more than 70% of metastatic melanoma and is correlated with invasive potential. However, the specific contribution MCAM makes to invasion and metastasis in melanoma is not clear. In this study, I have demonstrated that transfection of MCAM into MCAM-negative melanoma and CHO cells leads to changes in cell shape, and the modulation of cell-to-cell and cell-matrix interactions. MCAM positive cells were slower to spread on collagen type I, collagen type IV and laminin 1 than MCAM negative cells, although these differences were not apparent on vitronectin, fibronectin and laminin 10. In contrast, MCAM expression had little effect on cell adhesion to any of the matrices tested. MCAM positive (compared to negative) cells also showed morphological changes and a rearrangement of the actin cytoskeleton when plated on a matrix containing laminin 5. Taken together, these data suggest that MCAM expression modulates β1-integrinmediated spreading on matrix, but has little effect on αvβ3-mediated cell-matrix interactions. As this study provided little evidence to suggest that MCAM transfection altered β1 integrin expression levels on melanoma cells, it is proposed that a competitive interaction between the cytoplasmic domains of MCAM and β1 integrin may affect mature focal adhesion assembly. MCAM expression in melanoma cells was also associated with decreased cell movement over matrix into a scratch-wound site and an increased tendency to form cell cords on Matrigel. These two assays gauge the propensity of a cell to engage in cell-cell versus cell-matrix interactions, and suggest that MCAM positive cells favour cell-cell adhesion. Interestingly, MCAM transfection was also associated with an increased ability of melanoma cells to migrate through a basement membrane towards a chemoattractant. ... Analysis of the intracellular domain of MCAM revealed the presence of tyrosine and dileucine endocytosis signals. Interestingly, disruption of these two motifs did not seem to impair the internalization of MCAM from the cell surface. The di-leucine motif, however, was necessary for the recycling of MCAM back to the surface following endocytosis. Lastly, MCAM was found to exists as dimers within the cell membrane in the absence of ligand, although the exact location of the dimerization motif is not yet clearly defined. Collectively, findings from my study suggest: MCAM expression in melanoma cells facilitates cell-cell interactions, whilst concomitantly modulating cell-matrix interactions. MCAM transfection also leads to enhanced migration of melanoma cells through a basement membrane. Thus, MCAM expression may increase the ability of melanoma cells to migrate as a collective, a feature of highly invasive cancer. The intracellular domain of MCAM interacts with ApxL2, a novel member of the Shroom family of actin-binding proteins. It is likely that ApxL2 links a proportion of MCAM within the cell to the actin cytoskeleton, contributing to cell shape determination and other processes, such as migration. MCAM exists as dimers on the cell surface and is internalized at least partially by a clathrin-mediated mechanism.

L'adhésion contrôlée et la migration orientée des cellules est fondamentale pour plusieurs processus physiologiques et pathologiques. Une famille de polysaccharides linéaires, connus sous le nom de glycosaminoglycanes (GAG) est impliquée dans l'organisation et la présentation des protéines de signalisation, les chimiokines, à la surface des cellules et dans la matrice extracellulaire (ECM). Les travaux concernent le développement de surfaces biomimétiques bien définies aux niveaux moléculaires et supramoléculaires pour l‘étude des mécanismes d'intéractions protéines-GAG et l'analyse de la réponse cellulaire à des signaux biochimiques et biophysiques spécifiques. L'objectif de cette étude est de mieux comprendre les communications cellule-cellule et cellule-matrice induites par les GAGs.En utilisant la ligation oxime, les GAGs peuvent être fonctionnalisés de manière stable par la biotine à leur extrémité réductrice, ce mode de couplage s'est avéré déterminant pour préparer des surfaces fonctionnalisées par les GAGs de manière stable. Une monocouche de streptavidine est utilisée comme plateforme modulable pour assembler séquentiellement les molécules biotinylées, avec une orientation et des densités de surface contrôlées. Des GAGs (les héparane sulfate (HS), en particulier), des chimiokines et d'autres composants de l'ECM (par exemple un ligand d'adhésion cellulaire, RGD) ont été assemblés reconstituant certains aspects des surfaces in vivo (cellules ou de l'ECM). La microbalance à quartz (QCM-D) et l'ellipsométrie spectroscopique nous ont permis de caractériser et de contrôler la présentation supramoléculaire du HS et du RGD. Ces surfaces modèles ont été utilisées pour étudier les interactions supramoléculaires entre le HS et la chimiokine SDF-1α/CXCL12α facteur d'origine stromale et pour analyser les réponses cellulaires aux signaux extracellulaires. Nos données apportent la preuve que la chimiokine, CXCL12α rigidifie les assemblages de HS, et que cet effet est dû à la réticulation des chaînes de HS induite par la protéine. La cinétique des interactions HS-chimiokine a été quantifiée en utilisant la résonance plasmonique de surface (SPR). Nous avons également démontré que le mode de présentation de la chimiokine sur la surface, en particulier la présence des HS, influence le comportement des myoblastes. Nos données montrent que les récepteurs cellulaires CXCR4 (récepteur de la CXCL12α) et l'intégrine (récepteur du RGD) peuvent agir en synergie pour contrôler l'adhésion et la migration cellulaire. Ces surfaces modèles fournissent des indications précieuses qui pourront être appliquées au domaine de la glycobiologie, par exemple, pour étudier le rôle des GAGs dans la migration cellulaire induite par les chimiokines. / The oriented migration and controlled adhesion of cells is fundamental to many physiological and pathological processes. A family of linear polysaccharides, known as glycosaminoglycans (GAGs), help organizing and presenting signaling proteins, so-called chemokines, on the cell surface and in the extracellular matrix thus regulating cellular behavior. The objective of this PhD thesis was to develop biomimetic surfaces that are highly defined and tunable, for mechanistic studies of GAG-protein interactions on the molecular and supramolecular levels, and to probe cellular responses to defined biochemical and biophysical cues to better understand GAG-mediated cell-cell and cell-matrix communications.Applying oxime ligation, GAGs could be stably functionalized with biotin at the reducing end, and these features proved crucial for the reliable preparation of GAG-functionalized surfaces. A streptavidin monolayer served as a ‘molecular breadboard' to sequentially assemble biotinylated molecules with controlled orientation and surface densities. GAGs (heparan sulfate (HS) in particular), chemokines and other ECM components (e.g. integrin ligands promoting cell adhesion, RGD) were assembled into multifunctional surfaces that recapitulate selected aspects of the in vivo situation. Quartz crystal microbalance (QCM-D) and spectroscopic ellipsometry permitted us to characterize and control the supramolecular presentation of HS and RGD. These model surfaces were used to study the supramolecular interactions between HS and the selected chemokine stromal derived factor SDF-1α/CXCL12α and to analyze cellular responses to extracellular cues. Our data provide evidence that CXCL12α binding rigidifies HS assemblies, and that this effect is due to protein-mediated cross-linking of HS chains. The kinetics of chemokine binding to HS was quantified using surface plasmon resonance (SPR). We also demonstrate that the way in which the chemokine is presented, and in particular the presence of HS, is important for regulating myoblast behavior. Our data shows that the cell surface receptors CXCR4 (the CXCL12α receptor) and integrins (the RGD receptor) can act synergistically in controlling cellular adhesion and migration. These surfaces can generate novel insights in the field of glycobiology, e.g. in dissecting the function of GAGs in chemokine-mediated cellular migration.