There are some 15,000 known organophosphorus chemicals. Some of these OP’s, including VX and paraoxon, demonstrate an acute neurotoxicity due to the inhibition of cholinergic enzymes. Organophosphorus chemical warfare agents and pesticide neurotoxins are subject to hydrolysis by OP degrading enzymes. To be useful as a bioremediation or anti-chemical warfare agent, the enzyme must be tailored for, and integrated into, a practical application platform. Several studies have established enzyme-based countermeasures, describing such diverse applications as decontaminating foams for surface remediation, encapsulating enzyme with liposome for in vivo therapy, enzyme attachments to surfaces for biosensors and development of a corn expression system for large-scale enzyme production. The goal of the research described here is to select, investigate and improve the operational potential of organophosphate-degrading enzymes including Organophosphorus Hydrolase (OPH, 3.1.8.1) and Organophosphorus Acid Anhydrolase (OPAA, 3.1.8.2). Using saturation kinetics, the catalytic efficiencies of these two major detoxification enzymes were characterized with substrates representing each class of OP neurotoxin, phosphotriester, phosphothioate and phosphofluoridate. OPH presents superior kinetic parameters with each OP class tested. Variants of OPH were created to increase the operational effectiveness of OP hydrolytic enzymes against phosphorothioates. An H254S/H257L mutation in the active site resulted in an improvement in the kinetics (kcat/KM) for the phosphorothioate, demeton-S. To screen potential vascular protection therapies, an in vitro protocol was developed to predict enzymatic effectiveness for protection of acetylcholinesterase from acute OP-inhibition. The protection abilities of the enzymes were directly related to their second order rate constants as inhibitory levels of OP are below the KM of the enzymes. Consideration of contaminant nature concentration and enzyme kinetic parameters, kcat and KM, is critical to understanding decontamination and effective use of enzyme technology. These technologies continue to develop and provide promising new decontamination tools for OP compounds.

tert-butyl 1-methoxycarbonyl-1-ferrocenecarbamate, Boc-NH-Fc-COOMe, (1) was synthesized according to the literature procedure and modified to 1-amino-n′-ferrocenemethylcarboxylate, 1,n′-H2N-Fc-COOCH3 (2) by removing the Boc-group with TFA/Et3N mixture in dichloromethane. Compound 2 reacted with alkylating agents like MeI, EtI, EtSCH2CH2Cl (MA) and (CN)(EtO)2P(O) (NA) to form MeNH-Fc-COOMe (3), EtNH-Fc-COOMe (4), EtSCH2CH2NH-Fc-COOMe (5), (EtO)2P(O)NH-Fc-COOMe (6), respectively. Cyclic voltammetry (CV) of these compounds showed different half-wave potential characteristics compared to aminoferrocene and was dependent on the nature of the substituents, which was rationalized by molecular orbital calculations. Electron donating groups (Me, Et and 2-chloroethyl ethylsulfide, MA) shifted the half-wave potential towards the cathodic direction while electron withdrawing group like diethyl cyanophosphonate, NA, shifted it toward anodic direction. Anodic to cathodic peak separation were found to be within 62-88 mV indicating a quasi-reversible system. <p>Hydrolysis of compound 1 resulted in the formation of tert-butyl 1-methoxycarbonyl-1-ferrocenecarboxylic acid, Boc-NH-Fc-COOH, (11) which was coupled with cystamine using the EDC/HOBt protocol to synthesize the cystamine conjugate [BocHN-Fc-CO-CSA]2 (12). This molecule is equipped with an amino group that directly linked to the redox receptor. Compound 12 was fully characterized by spectroscopic methods and by single crystal x-ray diffraction. The cystamine conjugate 12 formed films on gold substrates, which upon deprotection of the amino group, reacted with chemical warfare agents (CWAs) mimics, such as EtSCH2CH2Cl (MA), a simulant for the sulfur mustard HD, and (CN)(EtO)2P(O) (NA), a simulant for the nerve agent Tabun. Their reaction with the surface-bound ferrocene derivative results in the formation of N-substituted products. <p>CV measurements showed anodic shifts of the Fc redox potentials by 50 (±5) mV after exposure to MA, and NA. Measurements by quartz crystal microbalance (QCM) showed an increase in mass upon exposure to MA and NA. Ellipsometry measured a film thickness increase from 6 (±1) Å for the deprotected film to 10 (±4) Å for the film modified with MA and to 7 (±2) Å for the film modified with NA. The surfaces were analyzed by x-ray photoelectron spectroscopy (XPS) and clearly showed the attachment of the cystamine conjugate on the surface and its reaction with CWAs mimics.

tert-butyl 1-methoxycarbonyl-1-ferrocenecarbamate, Boc-NH-Fc-COOMe, (1) was synthesized according to the literature procedure and modified to 1-amino-n′-ferrocenemethylcarboxylate, 1,n′-H2N-Fc-COOCH3 (2) by removing the Boc-group with TFA/Et3N mixture in dichloromethane. Compound 2 reacted with alkylating agents like MeI, EtI, EtSCH2CH2Cl (MA) and (CN)(EtO)2P(O) (NA) to form MeNH-Fc-COOMe (3), EtNH-Fc-COOMe (4), EtSCH2CH2NH-Fc-COOMe (5), (EtO)2P(O)NH-Fc-COOMe (6), respectively. Cyclic voltammetry (CV) of these compounds showed different half-wave potential characteristics compared to aminoferrocene and was dependent on the nature of the substituents, which was rationalized by molecular orbital calculations. Electron donating groups (Me, Et and 2-chloroethyl ethylsulfide, MA) shifted the half-wave potential towards the cathodic direction while electron withdrawing group like diethyl cyanophosphonate, NA, shifted it toward anodic direction. Anodic to cathodic peak separation were found to be within 62-88 mV indicating a quasi-reversible system. <p>Hydrolysis of compound 1 resulted in the formation of tert-butyl 1-methoxycarbonyl-1-ferrocenecarboxylic acid, Boc-NH-Fc-COOH, (11) which was coupled with cystamine using the EDC/HOBt protocol to synthesize the cystamine conjugate [BocHN-Fc-CO-CSA]2 (12). This molecule is equipped with an amino group that directly linked to the redox receptor. Compound 12 was fully characterized by spectroscopic methods and by single crystal x-ray diffraction. The cystamine conjugate 12 formed films on gold substrates, which upon deprotection of the amino group, reacted with chemical warfare agents (CWAs) mimics, such as EtSCH2CH2Cl (MA), a simulant for the sulfur mustard HD, and (CN)(EtO)2P(O) (NA), a simulant for the nerve agent Tabun. Their reaction with the surface-bound ferrocene derivative results in the formation of N-substituted products. <p>CV measurements showed anodic shifts of the Fc redox potentials by 50 (±5) mV after exposure to MA, and NA. Measurements by quartz crystal microbalance (QCM) showed an increase in mass upon exposure to MA and NA. Ellipsometry measured a film thickness increase from 6 (±1) Å for the deprotected film to 10 (±4) Å for the film modified with MA and to 7 (±2) Å for the film modified with NA. The surfaces were analyzed by x-ray photoelectron spectroscopy (XPS) and clearly showed the attachment of the cystamine conjugate on the surface and its reaction with CWAs mimics.

There are some 15,000 known organophosphorus chemicals. Some of these OP’s, including VX and paraoxon, demonstrate an acute neurotoxicity due to the inhibition of cholinergic enzymes. Organophosphorus chemical warfare agents and pesticide neurotoxins are subject to hydrolysis by OP degrading enzymes. To be useful as a bioremediation or anti-chemical warfare agent, the enzyme must be tailored for, and integrated into, a practical application platform. Several studies have established enzyme-based countermeasures, describing such diverse applications as decontaminating foams for surface remediation, encapsulating enzyme with liposome for in vivo therapy, enzyme attachments to surfaces for biosensors and development of a corn expression system for large-scale enzyme production. The goal of the research described here is to select, investigate and improve the operational potential of organophosphate-degrading enzymes including Organophosphorus Hydrolase (OPH, 3.1.8.1) and Organophosphorus Acid Anhydrolase (OPAA, 3.1.8.2). Using saturation kinetics, the catalytic efficiencies of these two major detoxification enzymes were characterized with substrates representing each class of OP neurotoxin, phosphotriester, phosphothioate and phosphofluoridate. OPH presents superior kinetic parameters with each OP class tested. Variants of OPH were created to increase the operational effectiveness of OP hydrolytic enzymes against phosphorothioates. An H254S/H257L mutation in the active site resulted in an improvement in the kinetics (kcat/KM) for the phosphorothioate, demeton-S. To screen potential vascular protection therapies, an in vitro protocol was developed to predict enzymatic effectiveness for protection of acetylcholinesterase from acute OP-inhibition. The protection abilities of the enzymes were directly related to their second order rate constants as inhibitory levels of OP are below the KM of the enzymes. Consideration of contaminant nature concentration and enzyme kinetic parameters, kcat and KM, is critical to understanding decontamination and effective use of enzyme technology. These technologies continue to develop and provide promising new decontamination tools for OP compounds.

No description available.

The threat of chemical warfare agent (CWA) attacks has persisted into the 21st century due to the actions of terror groups and rogue states. Traditional filtration strategies for soldier protection rely on high surface area activated carbon, but these materials merely trap CWAs through weak physisorption. Metal-organic frameworks (MOFs) have emerged as promising materials to catalyze the degradation of CWAs into significantly less toxic byproducts. The precise synthetic control over the porosity, defect density, and chemical functionality of MOFs offer exciting potential of for use in CWA degradation as well as a wide variety of other applications. Developing a molecular-level understanding of gas-MOF interactions can allow for the rational design of MOFs optimized for CWA degradation. Our research investigated the fundamental interfacial interactions between CWA simulant vapors, specifically sulfur mustard (HD) simulants, and zirconium-based MOFs (Zr-MOFs). Utilizing a custom-built ultrahigh vacuum chamber with infrared spectroscopic and mass spectrometric capabilities, the adsorption mechanism, diffusion energetics, and diffusion kinetics of HD simulants were determined. For 2-chloroethyl ethyl sulfide (2-CEES), a widely used HD simulant, infrared spectroscopy revealed that adsorption within Zr-MOFs primarily proceeded through hydrogen bond formation between 2-CEES and the bridging hydroxyls on the secondary building unit of the MOFs. Through the study of 1-chloropentane and diethyl sulfide adsorption, we determined that 2-CEES forms hydrogen bonds through its chlorine atom likely due to geometric constraints within the MOF pore environment. Temperature-programmed desorption experiments aimed at determining desorption energetics reveal that 2-CEES remain adsorbed within the pores of the MOFs until high temperatures, but traditional methods of TPD analysis fail to accurately measure both the enthalpic and entropic interactions of 2-CEES desorption from a single adsorption site. Infrared spectroscopy was able to measure the diffusion of adsorbates within MOFs by tracking the rate of decrease in overall adsorbate concentrations at several temperatures. The results indicate that 2-CEES diffusion through the pores of the MOFs is a slow, activated process that is affected by the size of the pore windows and presence of hydrogen bonding sites. We speculate that diffusion is the rate limiting step in the desorption of HD simulants through Zr-MOFs at lower temperatures. Stochastic simulations were performed in an attempt to deconvolute TPD data in order to extract desorption parameters. Finally, a combination of vacuum-based and ambient-pressure spectroscopic techniques were employed to study the reaction between 2-CEES and an amine-functionalized MOF, UiO-66-NH2. Although the presence of water adsorbed within UiO 66 NH2 under ambient conditions may assist in the reactive adsorption of 2-CEES, the reaction proceeded under anhydrous conditions. / Doctor of Philosophy / Chemical warfare agents (CWAs) are some of the most toxic chemicals on the planet and their continued use by terror groups and rogue nations threaten the lives of both civilians and the warfighter. Our work was motivated by a class of high surface area, highly porous materials that have shown the ability to degrade CWAs, specifically mustard gas, into less harmful byproducts. By determining the adsorption mechanism (how and where mustard gas “sticks” to the material), diffusion rates (how quickly mustard gas can travel through the pores of to reach the binding sites), and desorption energies (how strongly mustard gas “sticks” to the binding sites), we can alter the structure of these materials and to efficiently trap mustard gas and render it harmless. In the research described in this dissertation, we examined these fundamental interactions for a series of molecules that mimic the structure of mustard gas. and linear alkanes within several metal-organic frameworks with varying pore size. We observed the size of the pore environment affects the orientation that a given molecule sticks to binding sites as well as how quickly these compounds diffuse through the MOF. While the majority of these studies were conducted in a low-pressure environment that eliminated the presence of gas molecules in the atmosphere, research that exposed a MOF to a mustard gas mimic in an ambient environment demonstrated that gas molecules present in the atmosphere, especially water, can greatly impact the chemical interactions between mustard gas and zirconium-based MOFs.

he interactions of the chemical warfare agent sulfur mustard with amorphous silica were investigated using electronic structure calculations. In this thesis, the binding energies of sulfur mustard and mimic species used in the laboratory were calculated using density functional theory and fully ab initio calculations. The wB97XD and B97D functionals, which include functions to account for long-range dispersion interactions, were compared to experimental trends. The hydroxylated amorphous silica surface was approximated using a gas-phase silanol molecule and clusters containing a single hydroxyl moiety. Recent temperature programmed desorption experiments performed in UHV concluded that sulfur mustard and its less toxic mimics undergo molecular adsorption to amorphous silica. Hydrogen bonding can occur between surface silanol groups and either the sulfur or chlorine atom of the adsorbates, and the calculations indicate that the binding energies for the two hydrogen bond acceptors are similar. The adsorption of sulfur mustard and its mimics on silica also exhibits the presence of significant van der Waals interactions between alkyl of the adsorbates and the surface. These interactions, in combination with the formation of a hydrogen bond between a surface silanol group and the Cl or S atoms of the adsorbates, provide remarkably large binding energies. / Master of Science

Motivated by recent experiments in gas-surface chemistry, we report our results from computational investigations of heterogeneous systems relevant to atmospheric chemistry and protection against chemical weapons. To elucidate findings of ultra-high vacuum experiments that probe the oxidation of carbon-carbon double bonds on model surfaces, we used electronic structure and QM/MM methods to study the reaction of ozone with C60-fullerene and the products of nitrate addition to a vinyl-terminated self-assembled monolayer. In the first system, we followed a reaction pathway beginning with primary ozonide formation through the formation of stable products. Theoretical vibrational spectra were used to identify a ketene product in prior experimental work. Next, through the construction of a multilayer model for the initial addition product of a nitrate radical to a chain embedded within a self-assembled monolayer, we report theoretical spectra that are consistent with experimental results. We then examined the fundamentals of the hydrolysis mechanism for nerve agents by a catalyst of interest in the development of filtration materials for chemical-warfare-agent defense. By following the gas-surface reaction pathway of the nerve agent Sarin on the Lindqvist polyoxoniobate Cs8Nb6O19, we determined that the rate-limiting step is the transfer of a proton from an adsorbed water molecule to the niobate surface, concomitant with the nucleophilic addition of the nascent hydroxide to the phosphorus atom in Sarin. Our results support a general base hydrolysis mechanism, though high product-adsorption energies suggest that thermal treatment of the system is required to fully regenerate the catalyst. We report similar mechanisms for the simulants dimethyl methylphosphonate and dimethyl chlorophosphate, though the latter may serve as a better simulant in studies of this type. Finally, an investigation of Sarin hydrolysis with solvated Cs8Nb6O19 shows an increase in the rate-limiting barrier relative to the gas-surface system, revealing the role of Cs counterions in the reaction. Then, we further increased explicit solvation to model the homogeneous solution-phase reaction, finding a different mechanism in which a water molecule adds to phosphorus in the rate-limiting step and protonation of the niobate surface occurs in a subsequent barrierless step. By examining the rate-limiting barrier for protonation, we suggest that specific base hydrolysis is also likely in the homogeneous system. / Ph. D. / Phenomena that occur where gases meet the surfaces of solids or liquids find relevance in several arenas. In the lower atmosphere, reactions between oxidative gases such as ozone or nitrate on the surface of organic particulates cause these particles to grow and change, contributing to smog and harmful effects to human health. Using computational modeling, we can describe these reactions with atomic-level detail. In the first channel of research presented in this dissertation, we report results that provide insight into these environmental reactions. Then, we change our focus towards an understanding of the reactions that lead to the decontamination of chemical warfare agents on the surface of a transition metal oxide catalyst. Again with computational modeling, we follow reaction pathways as a nerve agent or less harmful simulant reacts with the surface of this material. The entire body of this work—that of atmospheric relevance and that towards an understanding of catalytic deactivation of toxic compounds—emphasizes a strong synergy with experimental efforts. Our work is motivated by a desire to understand experimental results, and the calculations we perform influence the design of future experiments.

Thesis (M.S.P.H.)--Uniformed Services University of the Health Sciences, 2006 / Typescript (photocopy)

Chemical warfare agents continue to pose a global threat despite the efforts of the international community to prohibit their use in warfare. For this reason, improvement in the detection of these compounds remains of forensic interest. Protein adducts formed by the covalent modification of an electrophilic xenobiotic and a nucleophilic amino acid may provide a biomarker of exposure that is stable and specific to compounds of interest (such as chemical warfare agents), and have the capability to extend the window of detection further than the parent compound or circulating metabolites. This research investigated the formation of protein adducts of the nitrogen mustard chemical warfare agents mechlorethamine (HN-2) and tris(2-chloroethyl)amine (HN-3) to lysine and histidine residues found on the blood proteins hemoglobin and human serum albumin. Identified adducts were assessed for reproducibility and stability both in model peptide and whole protein assays. Specificity of these identified adducts was assessed using in vitro assays to metabolize common therapeutic drugs containing nitrogen mustard moieties. Results of the model peptide assays demonstrated that HN-2 and HN-3 were able to form stable adducts with lysine and histidine residues under physiological conditions. Results for whole protein assays identified three histidine adducts on hemoglobin, and three adducts (two lysine residues and one histidine residue) on human serum albumin that were previously unknown. These protein adducts were determined to be reproducible and stable at physiological conditions over a three-week analysis period. Results from the in vitro metabolic assays revealed that adducts formed by HN-2 and HN-3 are specific to these agents, as metabolized therapeutic drugs (chlorambucil, cyclophosphamide, and melphalan) did not form the same adducts on lysine or histidine residues as the previously identified adducts formed by HN-2 and HN-3. Results obtained from the model peptide and full protein work were enhanced by comparing experimental data to theoretical calculations for adduct formation, providing further confirmatory data. This project was successful in identifying and characterizing biomarkers of exposure to HN-2 and HN-3 that are specific and stable and which have the potential to be used for the forensic determination of exposure to these dangerous agents.