Thesis (MSc (Zoology)) -- University of Pretoria. / Includes bibliographic references (leaves 48-54).

Les forêts côtières inondables (FCI) des régions tropicales et subtropicales remplissent des fonctions écologiques nécessaires aux écosystèmes marins côtiers situés en aval et aux populations humaines vivant à proximité Aux Antilles, les mangroves et les forêts marécageuses à Pterocarpus officinalis sont structurés par des espèces ligneuses qui ont développé des adaptations particulières à la salinité, à l’inondation et aux substrats meubles sur lesquels elles reposent. Dans des contextes climatiques à forte saisonnalité, les saisons sèches prolongées entraînent de fortes variations de la salinité et du niveau de la nappe, que le changement climatique devrait amplifier. Les modèles climatiques de la région Caraïbe prévoient des saisons sèches plus sèches liées à une baisse des précipitations de 20 à 50 %. Or, la question des capacités de résistance et d’acclimatation des espèces ligneuses des FCI à des variations saisonnières marquées de leur environnement édaphique a été peu traitée dans la littérature scientifique.L’objectif de ce travail de thèse a été double. Il s’est agi, d'une part, de caractériser la structure et la croissance de faciès de végétation représentatifs des FCI antillaises et de mettre en évidence leurs déterminants. A cet effet, des individus adultes, des espèces ligneuses dominantes des FCI, (Avicennia germinans, Laguncularia racemosa, Pterocarpus officinalis, Rhizophora mangle), dans cinq faciès de végétation sur le gradient terre-mer, ont été suivis sur l'île de Grande-Terre (Guadeloupe). D’autre part, les effets de variations salines extrêmes sur la croissance et l’écophysiologie de ces quatre espèces ont été évalués au stade plantule par une expérience en conditions contrôlées.A travers cette étude, il a été montré que les différences de salinité et de fertilité entre les stationspermettent d’expliquer la composition et la structure des peuplements de FCI. Cette étude a égalementmontré que P. officinalis peut se maintenir dans une gamme de salinité plus large que ne l'indiquait lalittérature.Dans le contexte des Antilles où les marnages sont faibles, la saisonnalité du climat entraine des variations saisonnières importantes d’un ensemble de descripteurs édaphiques tels que le niveau de la nappe, la salinité du sol, le pH et le potentiel RedOx. L’inondation et la salinité des sols sont fortement corrélées aux variations mensuelles des précipitations. Les périodes sèches sont accompagnées de salinités élevées et d’une baisse du niveau de la nappe allant jusqu’à l’exondation des sols dans toutes les stations suivies. Les stress environnementaux liés à la saisonnalité entrainent une baisse de la production primaire. L’accroissement cambial mensuel des individus est fortement corrélé avec les précipitations et l’intensité du vent. Dans les stations de mangrove, la sècheresse édaphique régule la production primaire des palétuviers. En forêt marécageuse, la part de la sècheresse atmosphérique semble plus importante pour expliquer la production de P. officinalis. Aussi, les sècheresses édaphique et atmosphérique doivent être prises en compte toutes deux pour modéliser efficacement la croissance des peuplements des FCI.Lors de la saison sèche, le stress le plus important est le stress hydrique, lié à la diminution de la teneur en eau du sol et à l’augmentation de la salinité, qui entraine des contraintes physiologiques sur les palétuviers (ajustements stomatiques, pertes de surface foliaire et de conductivité hydraulique). Le stress ionique, lié à la toxicité des ions Na+ et Cl-, permet aussi d’expliquer une partie de la contrainte sur l’assimilation en carbone. En saison sèche, l’aération des sols ne se traduit pas par une amélioration des performances de croissance chez toutes les espèces. Aussi, la croissance cambiale maximale de toutes les espèces de FCI est réalisée en saison des pluies lorsque la salinité est faible et les niveaux d’inondation élevés. / In tropical and subtropical regions, flooded coastal forests provide essentials goods and services to local communities. In the Antilles, mangrove forests and the Pterocarpus officinalis swamp forest host tree species that are adapted to salinity, flooding and loose substrates. In areas were climatic seasonality is strong, dry seasons lead to strong fluctuations of soil salinity and water table level ; that climate change is likely to make stronger again. Climate model for the Caribbean project drier dry seasons with a decease of 20 to 50 % in annual rainfall amounts. However, resistance and acclimation ability of flooded coastal forest’s species to strong environmental fluctuations still remain poorly studied.This thesis aims two objectives. On the one hand, it aims to characterize the forest structure and monthly growth of vegetation structures representative of the Antillean flooded coastal forests and to highlight their determinants. In this respect, adult trees of the four dominant species of local flooded coastal forest (Avicennia germinans, Laguncularia racemosa, Pterocarpus officinalis, Rhizophora mangle), in five stations along a sea – land gradient were monitored on the Grande-Terre island (Guadeloupe). On the other hand, the effects of salinity variation patterns and salinity levels on growth performances and physiology of seedlings from the four same species were investigated through a greenhouse experiment.This study shows that differences among average salinity and soil fertility explain the vegetation structure of flooded coastal forest. It also extents, in the literature, the range of salinity in which P. officinalis can stand at the tree stage.In the Antilles were tidal range is small, climate seasonality lead to strong edaphic seasonal variations in water table level, soil salinity, pH and RedOx potential. Flooding and soil salinity are strongly correlated to monthly rainfall amounts: dry periods lead to high salinity and to a decrease in water table level under the soil surface. Seasonal environmental stresses lead to a decrease of primary production. Cambial growth was strongly correlated to monthly precipitation and average wind speed. In mangrove stations, edaphic drought determines primary production of mangrove trees, when, in swamp forest stations, atmospheric drought determines an important part of P. officinalis’ primary production.During the dry season, water stress is the more important environmental stress, both by the decrease in soil humidity and the increase in soil salinity, and leads to physiological strains (stomatal adjustment, loss of leaf area and hydraulic conductivity) for mangrove trees. Ionic toxicity of ions Na+ and Cl- also explains a part of the strain on carbon assimilation. During the dry season, re oxygenation of soils via low water table level does not lead to an increase of physiological traits. Thus, maximum cambial growth of all species is observed during the rainy season, when salinity is low and water table level is high.Flooded coastal forest’s species do not have the same ability to recover after a dry episode. In all the studied stations, A. germinans’ cambial growth rises back as soon as the rainy season starts, when, for one station, cambial growth of L. racemosa and R. mangle stay null during the three first month of the rainy season. This low ability to recover after a dry episode is correlated to a stronger impact of the dry season on the physiological traits of these two species.The greenhouse experiment shows that salinity variation patterns are to be taken into consideration for explaining seedlings’ growth and salinity tolerance. A stronger salinity increase impacts the growth of all the studied species; a punctual drop of salinity highlights that flooded coastal forest’s species differ in ability to take advantage of a low salinity episode. These results are coherent with field observations as cambial growth was fairly explained by monthly precipitation.

Dominant understorey species, such as herbs, ferns, palms and shrubs may influence forest tree species diversity and dynamics. Their influence may be through shading the forest floor, thereby affecting regeneration of shade-intolerant species and reducing species diversity, or it may be through competition with seedlings for space and belowground resources, thus modifying or changing the structure of the forest. These effects may be compounded if the life cycle of the understorey species consists of synchronized reproductive and mortality events. This study examines the influence of a dominant understorey species, Isoglossa woodii (Acanthaceae), on regeneration of trees in Indian Ocean subtropical coastal dune forest in southern Africa. The species is a semiwoody herb and has population-wide synchronous reproduction at 4-7 year cycles after which it dies and regenerates from seed. In this thesis I examine three aspects of the ecology of this suppressive herb: (i) the ecological and environmental correlates of the distribution of I. woodii; (ii) the evolutionary advantages of synchronous monocarpy; and (iii) the ecological effects of the extensive cover and putative recruitment window caused by I. woodii on forest tree seedling dynamics and diversity. Isoglossa woodii covered 65–95 % of the understorey, while gaps in this understorey cover occupied the remaining 5–35 % of the area. The spatial distribution of I. woodii was strongly related to tree canopy structure, with the species excluded from sites with dense canopy cover. Woody seedling establishment was inhibited by low light availability ( / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2009.

Northern long-eared bat (Myotis septentrionalis) populations have declined sharply in recent years due to the introduction and rapid spread of White-nose Syndrome. This has prompted an urgent need for a greater understanding of their natural history in order to support the conservation of extant populations, particularly where forested day-roost and foraging habitats are being fragmented by development. Prior to 2006, with other Myotis species on the endangered species list, northern long-eared bats were understudied. In recent years, with the pressing concern to document the ecology of all cave bats affected by White-nose Syndrome on the landscape, researchers have now prioritized northern long-eared bat habitat needs, day-roost use, social dynamics, and barriers to gene flow. A relatively new discovery has been the numerous coastal populations that occur in smaller forest patches often surrounded by anthropogenic development. The goal of my research is to aid in informing future monitoring and management protocols that are specific to northern long-eared bats, particularly as they may shift from Threatened to Endangered under the Endangered Species Act. The chapters of this dissertation explore (1) similarities and differences between coastal and more documented upland habitat associations for populations of northern long-eared bats throughout the summer months through the use of acoustic detectors; (2) relationships between acoustic activity patterns and weather on an hourly basis for several bat species on Long Island, New York; and (3–4) day-roost characteristics and social network dynamics of a coastal northern long-eared bat maternity colony on Long Island, New York. I found that northern long-eared bat colonies have larger spatial footprints in – and a moderate tolerance for – forests in anthropogenically-developed areas than previously believed, though many natural history aspects of the bat were similar among coastal and interior populations. Installation of artificial day-roost structures such as bat boxes would likely be used and highly beneficial to colonies in these conditions, particularly to offset the deleterious effects of stochastic disturbance events on day-roost availability and to support social cohesion (and, by extension, reproductive success) for coastal maternity colonies. Additionally, I found that acoustic activity increased in riparian areas, or at sites closer to water features, and as proportion of forest coverage increased at a broad scale. However, immediately around the detector this relationship was reversed. Taken together, this demonstrates that riparian corridors, water features, and forest structural heterogeneity should explicitly be included in management guidelines. / Doctor of Philosophy / White-nose Syndrome is a fungal disease that has killed millions of cave bats in North America, including the northern long-eared bat (Myotis septentrionalis) that during the spring through fall uses forests for roosting and foraging habitat. As the disease continues to spread, and as forests are increasingly being lost to urbanization, it is imperative for researchers and land managers to understand the landscape needs of this species so that they can retain those forests that are used by this species. In addition to broader landscape needs, it is important to understand what specific forest stand to tree features the bats are using, how their social dynamics support their reproductive success, and how to best support habitat conditions foster mating in the fall swarm to avoid inbreeding. In recent years, more northern long-eared bats have been documented in coastal landscapes, suggesting that these areas might be more important to the conservation of the species than previously believed. In this dissertation, my aim was to explore how or why the landscapes in these coastal areas were being used by these bats both during nightly foraging and during the day as resting areas (day-roosts). Additionally, I explored how multiple species of bats were responding to weather conditions on the coast across seasons. Overall, I found that complex forests continue to be an important resource for northern long-eared bats, as well as water features whereby the latter should be more explicitly included in conservation management plans. Northern long-eared bats also show an ability to successfully use small forest patches within a larger urbanized landscape, including using human structures for day-roosts. Human structures might provide reliable, multi-year day-roosts in areas where extreme coastal weather events (hurricanes) occur or increase or as natural processes reduce the suitability of these forests to provide day-roosts. These structures, particularly artificial roost boxes could also support the social network of reproductive northern long-eared bats and thus maintain population stability to some extent.

Central to the issue of harvest feasibility on the outer BC coast (CWHvh) is the question of whether sites, once harvested, can be regenerated, and whether the time period for replacement and subsequent growth is economically and environmentally acceptable. Since low productivity sites have not been harvested in the past, there is a lack of data to answer this question. We tried to provide an answer by assessing regeneration following natural disturbances. Small scale gap disturbances are the norm within old-growth stands. If regeneration is not a problem in gaps, then we have some evidence that regeneration should not be a problem upon implementation of our management practices. The objectives of this study were: (1) to develop baseline information on the mechanisms and the patterns of regeneration across a sequence of forest types; (2) to assess regeneration success with respect to productivity; and (3) to estimate future growth and productivity.

Human appropriation of natural resources, and the consequent loss of habitats, means that ecological restoration may in the future become a vital conservation tool. For this to happen, we have to understand the processes and factors that govern community assembly, and their management. Here I analyze data on community structure (richness, evenness, diversity, composition) of assemblages (millipedes, spiders, dung beetles, plants, birds, rodents), and on soil chemical and physical properties, to describe and evaluate post-disturbance dune forest regeneration patterns. Data were collected from program of a dune mining company), from post-mining rehabilitating dune forests, and from self-regenerating dune forests in northern KwaZulu-Natal. Both succession theory and community assembly theory predict that a species' niche will determine when it will colonize new sites, and by extension, what the eventual species composition will be. This type of control should result in deterministic regeneration patterns for a community. In support of this view, I found that the majority of habitat-age related changes in community structure and ecosystem function were either towards benchmark values (and will reach these values in less than 65 years post-disturbance), or were already equal to the benchmark. Age-related trajectories were repeatable between surveys and post-mining sites were changing as fast or faster than spontaneously regenerating sites. Moreover, detailed analysis of changes in community composition of millipedes, dung beetles, herbs, trees, birds and rodents showed that all of the taxa were also regaining the benchmark's species composition. However, community change was dependent on how it was measured - dung beetles recovered only species presence, but others relative abundances as well. Changes were almost never exponential, suggesting that colonization and extinction are not the orderly events foreseen by equilibrium biodiversity theory. Furthermore, the average abundances of birds, trees and millipedes in undisturbed dune forest patches were correlated with colonization success, suggesting that post-disturbance recovery through colonization may be controlled from outside the local community, rather than by species interactions. The recovery of the spider community appeared to be towards the benchmark forest community, but spider species composition was critically linked to microhabitat structure. Because microhabitat is not necessarily restored concurrently with forest community structure, the spider assemblage (and possibly other invertebrates) may not recover the desired pre-disturbance structure or composition. Dune forests thus seem to be resilient to mining disturbances, since most taxa were recovering structure and composition. However, classic successional and community assembly theories are unlikely to fully explain these community recovery mechanisms. More likely, post-disturbance recovery occurs because a new habitat passively "samples" the rain of dispersing propagules and individuals, leading to a high probability of capturing the average species composition of the region. A conceptual model of dispersal in the landscape suggested that species composition of new habitats might equilibrate to the composition of the closest habitat undergoing the least amount of species compositional change, although this may not apply to all taxa. This model may serve as the basis for directing future research and restoration management. / Thesis (DPhil (Zoology))--University of Pretoria, 2006. / Zoology and Entomology / unrestricted

The aims of this study were to develop a detailed record of the tetranychid mites of Kenya and Tanzania, to assess the diversity of tetranychid mites in the east African biodiversity hotspots and to determine female characters that can be used to identify the species of the economically important Tetranychus species found in these countries. The genetic diversity of the most abundant Tetranychus species (Tetranychus evansi Baker & Pritchard) was also assessed. The Tetranychidae (Acari) contain some of the most important pest species of phytophagous mites worldwide. Out of the almost 1,300 species in this family, 256 species are known to occur in Africa. Before this study, ten species had been reported from Kenya and only three in Tanzania. The genus Tetranychus to which most of the pest species belongs to, can only be identified to species level by the use of the male aedeagus that is often difficult to visualize. The natural habitat, the Eastern Arc Mountains and East African Coastal Forests in Kenya and Tanzania is recognized as biodiversity hotspots but prior to his study, information on Tetranychidae in these hotspots was lacking. Thus, no information on the natural mite fauna composition was available. In Kenya, 18 tetranychid mite species from various plant hosts have been recorded. Four of these species belong to the subfamily Bryobiinae and the other 14 to the subfamily Tetranychinae. Eight of the mite species identified belong to the genera Bryobia, Petrobia, Peltanobia, Paraplonobia, Duplanychus, Eutetranychus and Mixonychus and are being reported for the first time in Kenya while the other ten had already been reported before. For Tanzania, six species belonging to the genera Tetranychus, Eutetranychus and Mixonychus are being reported for the first time from Tanzania and other three had been reported before. A list of these species, their brief descriptions as well as a key for identification is provided. A redescription of Peltanobia erasmusi including previously undescribed male characters is given. Schizotetranychus kwalensis sp. nov. from Kenya and Brevinychus meshacki from Tanzania were collected on Omorcarpum kirkii (Fabaceae) from Matuga, Kwale district, Kenya and Philonoptera eriocalyx (Fabaceae) from Sangasanga, Mvomero district, Tanzania respectively and described. Revised keys of Brevinychus and of the African species of Schizotetranychus are also provided. Tetranychus evansi Baker & Pritchard ranked highest in abundance amongst all the tetranychid mites collected. It was found in four out of five fragments of the hotspot, and it survives in a wide range of altitudes from as low as 123 m to 1655 m. Molecular examination of T. evansi collected from Kenya and Tanzania and on different host plants revealed an identical DNA sequence of the mitochondrial COI fragment and 19 identical microsatellite alleles suggesting a single introduction of this species to this part of East Africa. Female characters of four Tetranychus species found in Kenya were explored using the scanning electron microscope. Differences in the distances between the duplex setae of species belonging to the desertorum group (Tetranychus evansi Baker & Pritchard and Tetranychus ludeni Zacher) and those grouped by Flechtmann and Knihinicki (2002) under group 9 (Tetranychus neocaledonicus Andre and Tetranychus urticae Koch) were observed. The dorsal striae of T. evansi, T. neocaledonicus and T. urticae have semicircular lobes whereas those on the dorsal striae of T. ludeni are triangular. / Thesis (PhD (Environmental Sciences))--North-West University, Potchefstroom Campus, 2012.

The aims of this study were to develop a detailed record of the tetranychid mites of Kenya and Tanzania, to assess the diversity of tetranychid mites in the east African biodiversity hotspots and to determine female characters that can be used to identify the species of the economically important Tetranychus species found in these countries. The genetic diversity of the most abundant Tetranychus species (Tetranychus evansi Baker & Pritchard) was also assessed. The Tetranychidae (Acari) contain some of the most important pest species of phytophagous mites worldwide. Out of the almost 1,300 species in this family, 256 species are known to occur in Africa. Before this study, ten species had been reported from Kenya and only three in Tanzania. The genus Tetranychus to which most of the pest species belongs to, can only be identified to species level by the use of the male aedeagus that is often difficult to visualize. The natural habitat, the Eastern Arc Mountains and East African Coastal Forests in Kenya and Tanzania is recognized as biodiversity hotspots but prior to his study, information on Tetranychidae in these hotspots was lacking. Thus, no information on the natural mite fauna composition was available. In Kenya, 18 tetranychid mite species from various plant hosts have been recorded. Four of these species belong to the subfamily Bryobiinae and the other 14 to the subfamily Tetranychinae. Eight of the mite species identified belong to the genera Bryobia, Petrobia, Peltanobia, Paraplonobia, Duplanychus, Eutetranychus and Mixonychus and are being reported for the first time in Kenya while the other ten had already been reported before. For Tanzania, six species belonging to the genera Tetranychus, Eutetranychus and Mixonychus are being reported for the first time from Tanzania and other three had been reported before. A list of these species, their brief descriptions as well as a key for identification is provided. A redescription of Peltanobia erasmusi including previously undescribed male characters is given. Schizotetranychus kwalensis sp. nov. from Kenya and Brevinychus meshacki from Tanzania were collected on Omorcarpum kirkii (Fabaceae) from Matuga, Kwale district, Kenya and Philonoptera eriocalyx (Fabaceae) from Sangasanga, Mvomero district, Tanzania respectively and described. Revised keys of Brevinychus and of the African species of Schizotetranychus are also provided. Tetranychus evansi Baker & Pritchard ranked highest in abundance amongst all the tetranychid mites collected. It was found in four out of five fragments of the hotspot, and it survives in a wide range of altitudes from as low as 123 m to 1655 m. Molecular examination of T. evansi collected from Kenya and Tanzania and on different host plants revealed an identical DNA sequence of the mitochondrial COI fragment and 19 identical microsatellite alleles suggesting a single introduction of this species to this part of East Africa. Female characters of four Tetranychus species found in Kenya were explored using the scanning electron microscope. Differences in the distances between the duplex setae of species belonging to the desertorum group (Tetranychus evansi Baker & Pritchard and Tetranychus ludeni Zacher) and those grouped by Flechtmann and Knihinicki (2002) under group 9 (Tetranychus neocaledonicus Andre and Tetranychus urticae Koch) were observed. The dorsal striae of T. evansi, T. neocaledonicus and T. urticae have semicircular lobes whereas those on the dorsal striae of T. ludeni are triangular. / Thesis (PhD (Environmental Sciences))--North-West University, Potchefstroom Campus, 2012.

Coastal forest retreat in the Florida Keys during the 20th century has been attributed to a combination of sea level rise and hurricane storm surge impacts, but the interactions between these two disturbances leading to forest decline are not well understood. The goal of my research was to assess their effects over a period spanning more than two decades, and to examine the relationships between these press and pulse disturbances and freshwater availability in pine rockland, hardwood hammock, and supratidal scrub communities. Impacts and recovery from two storm surges, Hurricanes Georges (1998) and Wilma (2005), were assessed with satellite-derived vegetation indices and multiple change detection techniques. Impacts were greater at lower elevations, and in hardwood hammock, spectral signatures indicative of plant stress and productivity returned to pre-disturbance levels within a few years. In pine rockland, impacts were predominately related to Hurricane Wilma, however, a similar return to pre-disturbance conditions was absent, suggesting that trajectories of disturbance recovery differed between the two communities. Long-term monitoring of forest composition, structure, and groundwater salinity showed that compositional shifts in the low shrub stratum were associated with salinization of the freshwater resource attributable to sea level rise. Throughout the course of twelve months of climate and groundwater monitoring (2011-2012), groundwater salinity generally decreased in response to large precipitation events. Modeling of geophysical data indicated that groundwater salinity was an important predictor of community type. Isotopic analysis of d18O in plant stem water and foliar d13C was used to determine temporal and spatial patterns in water use and plant stress in two community dominants, slash pine, Pinus elliottii var. densa, and buttonwood, Conocarpus erectus. Both species relied heavily on groundwater, and plant stress was related to increasing groundwater salinity. The results of this work suggest that the interaction of press and pulse disturbances drive changes in community composition by causing mortality of salt-sensitive species and altering the freshwater resource.

L’origine de la structuration spatiale de la diversité inter spécifique (SSDS) des forêts d’Afrique centrale est l'objet de vigoureux débats quant à l’importance relative des facteurs historiques, stochastiques et déterministes. De plus, la SSDS est le plus souvent mal caractérisée, en particulier la variation spatiale de la composition des communautés (diversité beta).<p>L’hypothèse la plus souvent avancée pour expliquer l’origine des centres de diversité et d’endémisme est historique :ces centres constitueraient d’anciens refuges forestiers formés pendant les périodes sèches du Quaternaire. Cependant, la forte hétérogénéité environnementale de ces régions pourrait tout aussi bien expliquer la SSDS.<p>L'objectif principal de cette thèse est de tester l'importance de ces facteurs (historiques et/ou hétérogénéité environnementale) :si les facteurs historiques sont déterminants, on s’attend à observer une concordance spatiale entre la SSDS et la structure spatiale de la diversité génétique (SSDG). En effet, la variation neutre au sein des espèces est en grande partie soumise aux processus qui affectent également la SSDS (dérive génétique/écologique et dispersion des espèces/flux de gènes). L’approche utilisée dans cette thèse consiste donc à comparer et évaluer la concordance spatiale entre la SSDS et la SSDG.<p>Le modèle biologique et le cadre géographique de cette étude sont les communautés et les populations d’arbres des forêts humides d’Afrique centrale atlantique, avec une attention particulière pour les forêts gabonaises. La SSDS a été étudiée sur la base de relevés de communautés d’arbres (16308 individus) et la SSDG sur la base de séquences d’ADN chloroplastiques de six espèces d’arbres (Greenwayodendron suaveolens, Scorodophloeus zenkeri, Afrostyrax lepidophyllus, Afrostyrax kamerunensis, Santiria trimera et Erythrophleum suaveolens).<p>Quatre objectifs spécifiques ont été retenus :<p>(i)\ / Doctorat en Sciences / info:eu-repo/semantics/nonPublished