Copano Bay currently exceeds fecal coliform Texas Surface Water Quality Standards for oyster water use. Aransas and Mission River Tidals currently exceed enterococci water quality standards for contact recreation use. The fecal coliform Copano Bay Bacterial Loadings Model will be used to support the TCEQ Total Maximum Daily Load (TMDL) program to develop the TMDLs for the three impaired water segments. The objectives of this research are to identify the major bacterial sources in the Copano Bay watershed, to calculate the total bacterial loadings (i.e., the TMDLs) from these sources, and to estimate the load reductions needed to bring each of the impaired segments into compliance with water quality standards. The potential bacterial sources that were considered in the model were wastewater treatment plants (WWTPs), waterbirds, livestock, failing septic systems, and other non-point sources that originate from different types of land uses (e.g., urban, forest, etc.). This thesis presents an analysis of the existing bacterial monitoring dataset for fecal coliform, including spatial and statistical analysis of the bacterial monitoring data, an estimation of fecal coliform loadings (the input into the models), including non-point and point source calculations, and a description of bacterial transport of fecal coliform from the sources in the watersheds, rivers, and Copano Bay using the model, including explanations for how the model parameters were determined. The main assumptions used in the model were that the fecal coliform bacteria decay (first-order reaction rate) in watersheds and along streams and channels, and Copano Bay is divided up into four Continuous Flow, Stirred Tank Reactors (CFSTRs). The results of the research include the modeled median fecal coliform concentrations throughout the watershed, the impact of different bacterial sources on each of the water segments in Copano Bay watershed, and the load reductions needed (and from what sources) to meet fecal coliform water quality standards. Cattle were determined (based on model results) to be the largest fecal coliform contributor of fecal coliform in Copano Bay. / text

The focus of this work was to develop a general methodology for modeling water quality in coastal waterbodies. The methods were developed in the context of modeling bacterial total maximum daily loads (TMDLs), but the general approach is applicable to a wide variety of pollutants. The study area for this dissertation was the Copano Bay watershed, which is located on the Texas Gulf Coast. The developed approach combines simple modeling techniques, of the type recommended by state and national advisory groups, in a GIS (geographic information system) framework, resulting in a methodical, easily transferred approach. This work addresses coastal systems where water quality is a function of operations in non-tidal rivers, tidal rivers, and bays, combined with the effects of watershed contributions. An uncertainty analysis was done to quantify a subset of the variance in the modeled results. Outcomes from this work include modeling tools, a documented workflow for modeling water quality in coastal watersheds, procedures to quantify the uncertainty associated with the developed approach, insight to the factors affecting water quality in the study area, and mean annual bacterial TMDLs for the impaired waterbodies of the Copano Bay watershed. / text

River export has a strong influence on the productivity of coastal waters. During storm events, rivers deliver disproportionate amounts of nutrients and organic matter to estuaries. Anthropogenic changes to the land use/cover (LULC) and water use also have a strong influence on the export of nutrients and organic matter to estuaries. This study specifically addressed the following questions: 1) How does river water chemistry vary across LULC patterns in the Mission and Aransas river watersheds? 2) How do fluxes of water, nutrients, and organic matter in the rivers vary between base flow and storm flow? 3) How do variations in nutrient/organic matter concentrations and stable isotope ratios of particulate organic matter (POM) in Copano Bay relate to river inputs? Water was collected from the Mission and Aransas rivers and Copano Bay from July, 2007 through November, 2008 and analyzed for concentrations of nitrate, ammonium, soluble reactive phosphorus (SRP), dissolved organic nitrogen, dissolved organic carbon, particulate organic nitrogen, particulate organic carbon (POC), and the stable C and N isotope ratios of the POM. The first half of the study period captured relatively wet conditions and the second half was relatively dry compared to long term climatology. Riverine export was calculated using the USGS LOADEST model. The percentage of annual constituent export during storms in 2007 was much greater than in 2008. Concentration-discharge relationships for inorganic nutrients varied between rivers, but concentrations were much higher in the Aransas River due to waste water contributions. Organic matter concentrations increased with flow in both rivers, but POM concentrations in the Aransas River were two fold higher due to large percentages of cultivated crop land. Values of [delta]¹³C-POC show a shift from autochthonous to allochthonous organic matter during storm events. Following storm events in Copano Bay, increases and quick draw down of nitrate and ammonium concentrations coupled with increases and slow draw down of SRP illustrate nitrogen limitation. Organic matter concentrations remained elevated for ~9 months following storm events. The [delta]¹³C-POC data show that increased concentrations were specifically related to increased autochthonous production. Linkages between LULC and nutrient loading to coastal waters are widely recognized, but patterns of nutrient delivery (i.e. timing, duration, and magnitude of watershed export) are often not considered. This study demonstrates the importance of sampling during storm events and defining system-specific discharge-concentration relationships for accurate watershed export estimation. This study also shows that storm inputs can support increased production for extended periods after events. Consideration of nutrient delivery patterns in addition to more traditional studies of LULC effects would support more effective management of coastal ecosystems in the future. / text

The respective kinetics of bacterial leucine aminopeptidase and [beta]-glucosidase activities were investigated to improve understanding of factors controlling activity and hydrolytic capacity in estuarine organic-poor sands. Depth distributions of enzyme activity and bulk organic matter content were determined in sediments of Aransas Bay and Copano Bay Texas, to investigate enzyme dynamics as related to the geochemical properties of the sediment. Vertical profiles of activity in sediment showed that the enzymes were more active at the surface and that the potential hydrolysis rate of leucine aminopeptidase was higher than that of [beta]-glucosidase. Vertical patterns of enzyme activity correlated (weakly) with variations in sediment organic matter (TOC, TN, and carbohydrates) content. Enrichments of sediment samples with monomeric organic compounds and inorganic nutrients did not affect leucine aminopeptidase and [beta]-glucosidase activities in short- and long-term incubations. Enzyme activity was independent of nutrient availability and suggested that microbial communities were not nutrient-limited. Time-course assays of bacterial hydrolysis of TOC, TN, and carbohydrates provided information about how substrate limitation may affect enzyme activity. Positive correlations between bulk TOC and TN content and enzyme activity indicated enzyme dependence on polymeric substrate content. Induction of enzyme activity after sediment enrichments with specific labile compounds confirmed the importance of available organic substrate to enzyme hydrolysis efficiency. A kinetic approach established the occurrence of enzyme inhibition and its effects on enzyme hydrolytic capacity. The addition of a specific-enzyme substrate to sediment samples modified enzyme parameters and indicated that a substrate-reversible type of inhibitor could reduce enzyme hydrolytic capacity. The addition of polyphenol, as a natural inhibitor of enzyme activity, to the sediment resulted in a concomitant reduction of leucine aminopeptidase activity and ammonium regeneration rate, and thus demonstrated a close coupling between enzyme activity and sediment ammonium regeneration. These research results demonstrate the dynamic nature of the hydrolytic enzymes, provide information about the mechanisms of induction and inhibition of activity, and demonstrate some implications of reducing the hydrolytic capacity to organic matter decomposition and nutrient regeneration rates. / text