Coral reefs worldwide are experiencing unprecedented and rapid declines. However, deeper, mesophotic coral ecosystems (MCEs; 30–150 m) may act as refuges for coral species, providing larvae to recolonize degraded shallow reefs. This study assessed the genetic connectivity of shallow and mesophotic Montastraea cavernosa populations on the Belize Barrier Reef and the community structure of their endosymbiotic algae (Family Symbiodiniaceae) across a fine-scale depth gradient (10, 16, 25, 35 m). Evaluation of nine polymorphic microsatellite markers demonstrated that relatively shallow (10 and 16 m) M. cavernosa populations were genetically distinct from relatively deep (25 and 35 m) populations. High throughput sequencing of ribosomal coding DNA from Symbiodiniaceae communities of M. cavernosa revealed differences in community structure across depth, with shallow-specialist and depth-generalist community profiles. This research provides important information for the management of distinct deep and adds to the body of research on the understudied MCEs of the Mesoamerican Reef. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2019. / FAU Electronic Theses and Dissertations Collection

The need for a broader geographical and functional perspective in managing natural resources of the Belize barrier reef system was examined. The small country of Belize in Central America is struggling to increase its economic development and growth. It has an excellent natural resource base, the most dramatic component being the extensive barrier reef system just offshore. The research identified key economic and environmental issues relative to Belize’s reef complex, and analyzed resource management policies and actions taken to date. Development and conservation needs suggest a multiple use strategy aimed at economic and environmental sustainability. Due to areal extent and ecological complexity, the present reactive, small-scale and piecemeal approach is not adequate to realize sustainable utilization of the area’s resources. This research shows the need for a broad spatial and interdisciplinary “coastal zone" perspective, leading to a comprehensive and integrated strategy upon which to base resource planning and management. A strategy for the reef system must be accomplished within the broader context of a national resource management strategy, integrating concerns of economic development and environmental protection. As a component of this national policy, the proposed strategy for the barrier reef system is based on principles of multiple use of resources, coastal zone scope, and sustainability. The research supports a reef system-wide protected area, using a biosphere reserve framework and a customized model planning process to implement the strategy. / Master of Science