This thesis describes the preparation of a series of compounds containing π-excessive, five-membered, heterocyclic rings with peripheral aryl substituents, designed to investigate their oxidative cyclodehydrogenation and/or photocyclisation to form curved, fused aromatic systems with a heterocyclic atom at the core of the compound. The ability of these compounds to undergo oxidative cyclodehydrogenation was investigated using a range of conditions, including the use of Lewis acidic transition metals, organic reagents and light as catalysts to carry out the desired carbon-carbon bond forming reactions. Two backbone linked 2,2’-biimidazole ligands were prepared to investigate their coordination chemistry with a range of different metal ions and counter ions. Two families of model compounds, including ten previously unreported compounds, were prepared and subjected to various conditions for oxidative cyclodehydrogenation and photocyclisation resulting in the isolation of compounds with one carbon-carbon bond formed between the peripheral aryl rings in the same position on the heterocyclic ring, nineteen previously unreported compounds were isolated. Additionally, in one case oxidative cyclodehydrogenation resulted in the formation of two carbon-carbon bonds, producing a highly strained aromatic compound containing a heterocyclic ring. Photocyclisation of one family of compounds resulted in the formation of a different heterocyclic core dependent upon the substituent on the nitrogen atom. Five pentaarylpyrrole compounds, three of which were previously unreported, were also prepared after the exploration of various synthetic routes towards the pentaarylpyrrole motif. Photocyclisation also resulted in the formation of one carbon-carbon bond. The compounds resulting from oxidative cyclodehydrogenation and photocyclisation were characterised by NMR spectroscopy, UV/vis spectroscopy and fluorometry, where possible X-ray crystallography was also used. The coordination chemistry of backbone linked 2,2’-biimidazole ligands to various metal ions could be controlled by the length of the backbone linker. The ethyl linked 2,2’-biimidazole ligand formed bridging and monodentate coordination compounds with various metal ions, the metallosupramolecular assemblies produced with silver ions could be controlled by the anion present. Discrete coordination complexes were usually formed, but in two cases metallopolymers were produced. The propyl linked 2,2’-biimidazole ligand formed exclusively discrete, chelating complexes with copper (II) metal ions. Eighteen coordination complexes were prepared during the course of this study characterized by X-ray crystallography, and NMR spectroscopy where appropriate.

Au cours de cette thèse, j’ai mis au point et validé une voie de synthèse inédite donnant accès à une nouvelle famille de chromophores oligo-péri-naphtyléniques. Notre approche repose sur le couplage de deux briques facilement synthétisables (l’une centrale, l’autre terminale), puis sur une réaction de cyclodéshydrogénation multiple en milieu fortement basique. Aisément fonctionnalisés ensuite par estérification à leurs extrémités, ces colorants présentent un comportement cristallin liquide. Nous avons ainsi réussi à élaborer des cristaux liquides colonnaires absorbant fortement les grandes longueurs d’onde de la lumière visible tout en présentant leur mésophase à température ambiante. / During this thesis, I worked out and validated a novel synthetic route to a new series of oligo-peri-naphthylenic chromophores. Our approach is based on the assembling of two easily accessible building blocks – one central, the other terminal – via a coupling reaction followed by a multiple cyclodehydrogenation in a strongly basic medium. Smoothly further functionalised by esterification at each end, these dyes display a liquid-crystalline behaviour. We succeeded in elaborating columnar liquid crystals that strongly absorb the long wavelengths of the visible light while displaying their mesophase at room temperature.

Thesis advisor: Lawrence T. Scott / This dissertation describes the work that has been carried out towards accessing a C3v [6,6] nanotube end-cap through rational chemical synthesis. Continued advancement in carbon nanotube research has driven scientists to develop a successful route to usable quantities of nanotubes that are homogeneous in structure. Due to the current inability to separate nanotube mixtures efficiently, researchers in fields ranging from chemistry to computer science have been unable to exploit fully all that these unique molecules have to offer. Our envisioned approach to this obstacle involves elongation of a template endcap using iterative growth chemistry. The final stage of the proposed end-cap synthesis involves the execution of a six fold cyclodehydrogenation reaction. To carry out this desired transformation, a new microwave assisted variant of the anionic cyclodehydrogenation reaction has been developed. Through this chemistry we have been able to access a variety of both known and novel polycyclic aromatic hydrocarbons, often in impressively high yields. We hope that this chemistry will be useful to us in accessing the target nanotube end-caps, and to others in providing a new route to accessing a variety of polycyclic aromatic hydrocarbon cores. / Thesis (PhD) — Boston College, 2008. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Chemistry.

Nanographenes, or extended polycyclic aromatic hydrocarbons, have been attracting renewed and more widespread attention since the first experimental demonstration of graphene in 2004. However, the atomically precise fabrication of nanographenes has thus far been achieved only through synthetic organic chemistry. The precise synthesis of quasi-zero-dimensional nanographenes, i.e. graphene molecules, has witnessed rapid developments over the past few years, and these developments can be summarized in four categories: (1) non-conventional methods, (2) structures incorporating seven- or eight-membered rings, (3) selective heteroatom doping, and (4) direct edge functionalization. On the other hand, one-dimensional extension of the graphene molecules leads to the formation of graphene nanoribbons (GNRs) with high aspect ratios. The synthesis of structurally well-defined GNRs has been achieved by extending nanographene synthesis to longitudinally extended polymeric systems. Access to GNRs thus becomes possible through the solution-mediated or surface-assisted cyclodehydrogenation, or ‘‘graphitization,’’ of tailor-made polyphenylene precursors. In this review, we describe recent progress in the ‘‘bottom-up’’ chemical syntheses of structurally well-defined nanographenes, namely graphene molecules and GNRs.

Polyzyklische organische Moleküle und deren Derivate sind eine Klasse von Nanostrukturen, die wegen diverser möglicher Anwendungen in molekularer und organischer Elektronik viel Aufmerksamkeit in der Wissenschaft erregt haben. Um ihre einzigartigen Eigenschaften in vollem Umfang auszunutzen, muss man das Verhalten von molekularen Systemen auf der Nanoskala verstehen und eine Reihe von Herstellungsverfahren entwickeln. In dieser Arbeit werden molekulare Nanostrukturen durch den Bottom-Up-Ansatz der Oberflächensynthese erzeugt. Als Untersuchungsmethode gilt Rastertunnelmikroskopie (STM) bei tiefen Temperaturen und im Ultrahochvakuum als Werkzeug der Wahl. Drei verschiedene molekulare Systeme werden ausführlich erforscht, mit dem Ziel organische Nanostrukturen mit gewünschten Eigenschaften und atomarer Präzision zu erzeugen. Im ersten Teil dieser Arbeit wird eine Cyclodehydrierungsreaktion erfolgreich für die Synthese von asymmetrischen Starphen verwendet. Es wird dann gezeigt, dass dieses Molekül als unimolekulares NAND-Logikgatter fungieren kann. Dabei wird die Positionierungsänderung der elektronischen Resonanz nach der Zufügung einzelner Goldatome an die Inputs des Moleküls gemessen. Eine Kombination aus atomarer und molekularer Lateralmanipulation mithilfe der Spitze des Rastertunnelmikroskops sowie Rastertunnelspektroskopie wird verwendet, um dieses Verhalten zu demonstrieren. Die steuerbare Verschiebung von molekularen Resonanzen entsteht wegen der asymmetrischen Form des Starphens und wurde theoretisch vorhergesagt. Molekulare Drähte werden im zweiten Teil der Arbeit durch die oberflächenassistierte Ullmann-Kupplung hergestellt. Ihr Baustein besteht aus abwechselnden Donor- und Akzeptorgruppen und wurde speziell vorgesehen, um leitfähige flexible molekulare Drähte herzustellen. Die Leitfähigkeit wird durch Ziehen einzelner Drähten von der Oberflächen mit der STM-Spitze gemessen. Theoretische Berechnungen der komplexen Bandstruktur der molekularen Drähte bestätigen die experimentellen Ergebnisse und unterstützen dabei die Wichtigkeit der Balance zwischen Akzeptor- und Donorgruppen für die Leitfähigkeit der Drähte. Basierend auf diesen Resultaten werden neue Strukturen zur Herstellung vorgeschlagen. Der letzte Teil befasst sich schließlich mit einer unimolekularen Reaktion, die zur Erzeugung einer anomalen Kombination von Pentagon- und Heptagonringen in einem einzelnen organischen Molekül führt. Solche 5-7-Einheiten sind analog zu Stone-Wales-Defekten in Graphen und können elektronische Eigenschaften beachtlich ändern. Die exakte intramolekulare Struktur der Reaktionsprodukte wird durch hochauflösende STM-Bildgebung mit funktionalisierter Spitze eindeutig zugeordnet und zusätzlich durch DFT-Rechnungen bestätigt. / Polycyclic organic molecules and their derivatives present the class of nanostructures that are currently in the focus of scientific research due to their perspectives for the versatile applications in molecular and organic electronics. To exploit their unique properties to full extent, one has to understand the behavior of molecular systems at the nanoscale and to develop a set of fabrication methods. In this work, molecular nanostructures are fabricated using the bottom-up on-surface synthesis approach, which allows precision of the desired products and control over their properties through careful precursors design. To study the reaction flow and the properties of the formed structures, scanning tunneling microscopy (STM) at low temperature and in ultra-high vacuum is the tool of choice. In this work, three molecular systems are studied in detail, with the focus of fabricating atomically precise nanostructures with tailored properties. A cyclodehydrogenation reaction is successfully applied to synthesize an asymmetric starphene molecule in the first part of the work. It is then shown that this molecule can function as a unimolecular NAND logic gate with its response to the attached single Au atoms measured as the position of the electronic resonance. A combination of the atomic and molecular lateral manipulation with the STM tip and scanning tunneling spectroscopy (STS) is used to demonstrate this behavior. The effect of the controllable shifting of the molecular resonances is due to the asymmetric shape of the starphene molecule and was initially predicted theoretically. More complex structures, molecular wires, are presented in the second part of the work by using the surface-assisted Ullmann coupling reaction. The monomer unit, consisting of the alternant donor and acceptor parts, was specifically designed to achieve highly-conductive flexible molecular wires. The conductance is measured by pulling the single wires with the STM tip off the surface. Theoretical calculations of the complex band structure of the wires confirm the obtained results and support the discussion of the importance of the balance between the strength of acceptor and donor units for the conductance of the resultant wires. Based on this, some model structures are proposed. Finally, the last part deals with a unimolecular reaction to create an anomalous combination of pentagon and heptagon rings in a single organic molecule. Such 5-7 moieties are analogous to the Stone-Wales defects in graphene and may significantly alter the electronic properties. The precise intramolecular structure of the reaction products is unambiguously assigned by high-resolution STM imaging with functionalized tips and further confirmed by DFT calculations.