Thesis advisor: Noah P. Snyder / Dam removal is a widely used river restoration technique. Historically, dams produced hydropower, controlled flooding, and provided water storage, but currently many dams in the United States, specifically low head dams in New England, are obsolete. This study aims to assess the ability of a simple morphodynamic sediment transport model, Dam Removal Express Assessment Model (DREAM-1), developed by Cui et al. (2006a). I compare simulations to a dam removal monitoring project that quantified the physical response of the Souhegan River to the removal of the Merrimack Village Dam (MVD), Merrimack, NH. Pearson et al. (2011) reported results of field monitoring from August 2007-May 2010 and found that the Souhegan River responded to dam removal in two phases: initial rapid incision of impoundment sediment induced by immediate base level drop of 3.9 m (~50% of impounded sediment eroded in ~2 months), followed by an event-driven phase in which impoundment sediment eroded primarily during floods. The reach downstream of the dam showed a similar two-phase response, with rapid deposition in the first three weeks after dam removal followed by bed degradation to the pre-removal elevation profile within a year. I have continued the field methods of Pearson et al. (2011) for the past two survey periods, June 2011 and July 2012. Using five years of comprehensive field data, I conduct a hindcast to compare the sediment erosion and deposition patterns predicted by DREAM-1 to the observed downstream response of the Souhegan River. I model the changes in bed elevation for the downstream and upstream channel reaches at intervals that correspond with the dates of four longitudinal profile surveys and seven annual cross-section surveys. Results of the hindcast show that DREAM-1 predicts channel elevation accurately within one meter and with average discrepancy of ±0.35 m when compared to average channel bed elevations of each cross-section. DREAM-1 successfully simulates two phases of upstream channel response, rapid impoundment erosion followed by a longer period of gradual sedimentation change. However, DREAM-1 erodes to base elevation within 11 weeks after dam removal (erosion of the 88% impoundment sand), leaving little sand for transport during the later survey periods. This overestimation of impoundment erosion is likely the product of limitations of the model, specifically the simplification of channel cross-sections with constant width throughout the simulation. The model assumes uniform lateral sediment transport in the impoundment and does not capture the variation in width due to incision and channel widening. This hinders the ability of the model to simulate some details of the sediment budget developed by Pearson et al. (2011) and extended with recent surveys. / Thesis (MS) — Boston College, 2013. / Submitted to: Boston College. Graduate School of Arts and Sciences. / Discipline: Earth and Environmental Sciences.

In this study, the first hardfill dam in Turkey, Cindere Dam, is evaluated regarding current and alternative measurement systems in detail. Cindere Dam is a notable project, especially with its height as an example of hardfill dam, not only in Turkey but also in the world. First, the current instrumentation system of Cindere Dam is evaluated as a whole with reference to the parameters measured, instruments and data acquisition system. Second, an alternative instrumentation system is developed by using additional parameter and instruments to the current instrumentation system. Furthermore, each instrumentation system equipped with manual and automatic data acquisition systems is considered. The comparison between the current and the alternative instrumentation systems are also carried out in terms of technical and economical feasibility aspects. Although, the current instrumentation system is found to be satisfactory, it is observed that the alternative system promotes the current system in various aspects without increasing the cost significantly.

M.Sc. (Zoology) / Please refer to full text to view abstract

To contribute to the understanding of the invasion biology of common carp Cyprinus carpio in southern Africa, this thesis investigated the life history, relative abundance, long-term population demographics and trophic niche utilisations of non-native common carp C. carpio in relation to two endemic cyprinids, Orange River mudfish Labeo capensis and smallmouth yellowfish Labeobarbus aeneus in South Africa‟s largest impoundment, Lake Gariep. The growth zone deposition rates in astericus otoliths of the three species were validated as biannual for C. carpio and as annual for L. capensis and L. aeneus, which allowed for reliable estimation of lengths-at-age upon which growth, age-at-maturity and mortality rates could be estimated. Cyprinus carpio exhibited fast growth, matured relatively early at two years of age and attained a maximum age of seven years. Labeo capensis grew significantly slower, but attained older ages of up to 12 years. Females showed notably delayed maturation at approximately six years of age. The life history parameter estimates for L. aeneus were similar to those of L. capensis. These species-specific life history characteristics contributed to a substantially higher population growth potential of C. carpio compared to L. capensis and L. aeneus. Delta-lognormal and delta-gamma Generalized Linear Models (GLMs) were used to analyse patterns of relative abundance of L. capensis, L. aeneus and C. carpio. The application of these GLMs was necessary to account for large proportions of zeros and strong skewness in the catch-per-unit-effort (CPUE) from experimental gillnet and fisheries-dependent angler surveys. Confidence intervals around predicted abundance indices were obtained through the development of a generalised parametric bootstrap procedure. The resulting standardised abundance indices were coupled with results from analysis of stable isotope ratios of fish tissues and potential food resources and revealed that C. carpio was mainly confined to soft-bottom habitats, where it predominantly foraged on benthic invertebrates. Labeo capensis was abundant in a wide range of benthic habitats and was consumed basal food resources such as detritus. Labeobarbus aeneus was found to feed mostly on pelagic zooplankton. There were no significant interspecific differences in trophic niche space, suggesting limited resource competition among the three species. Standardised historical and contemporary gillnet CPUE data indicated slow population growth rates of L. capensis and L. aeneus during the first ten years postimpoundment, but showed high biomass levels some four decades after impoundment. These results could be corroborated by stochastic age-structured production model (ASPM) simulations. In contrast to the two endemic species, the gillnet CPUE of C. carpio showed a clear „boom and bust‟ pattern, which, based on ASPM simulations, could be best explained by increased food availability during the first five years postimpoundment, followed by suboptimal conditions thereafter. Together, these results provided evidence that the establishment of the C. carpio population did not prevent the slow but successful long-term establishment of the two large endemic cyprinids. Both endemic fishes revealed specialised feeding within the impoundment.

The Orange-Fish and Cookhouse tunnels that are part of a major inter-basin water transfer scheme (IBT) act as a pathway for several fish species from the Orange River system to enter the Great Fish and Sundays River systems in South Africa. These include Labeo capensis and L. umbratus. Labeo capensis was restricted to the Orange River system before the inter-basin water transfer scheme. Labeo umbratus occurred naturally in the Orange River and in southern flowing river systems. Previous studies showed that the two species hybridise in Hardap Dam, located in a tributary of the Orange River system in Namibia. There are also unconfirmed reports of hybrids from Darlington Dam on the Sundays River system. The aim of the thesis was to confirm hybridisation in Hardap Dam, assess whether hybridisation between L. capensis and L. umbratus has occurred in Darlington Dam and to gain a better understanding of the diversity of these two species. Morphology (morphometrics and meristics), a nuclear S7 intron and the mitochondrial cytochrome ♭ gene were used to assess for hybridisation. A total of 275 specimens were analysed from across the geographical range of the two species. The two species could be distinguished using morphometrics (dorsal fin base, interorbital width and operculum to eye distance) and meristics (lateral line, origin of the dorsal fin to lateral line, origin of the pelvic fin to lateral line and caudal peduncle scale counts) characters. Hybrids from Hardap and Darlington dams were placed between the two species clusters. Labeo umbratus from the Orange River and southern flowing rivers formed a single cluster. The two species could also be distinguished from each other with six nuclear DNA mutations and hybrids were heterozygous at such sites in both dams. Labeo umbratus populations from the Orange River and southern flowing rivers (Gouritz, Gamtoos, Sundays, Bushmans, Great Fish and Nahoon) formed a single lineage. Analysis of mitochondrial DNA, however, revealed that L. umbratus populations from the Orange River and southern flowing rivers were two lineages that differ from each other by 5 mutations. Labeo capensis could be differentiated from both these lineages. Being maternally inherited, mitochondrial DNA did not reveal hybridisation, but ten specimens with L. capensis haplotypes were found in the Darlington Dam. In Hardap Dam, however, it appears that only L. capensis mitochondrial DNA haplotypes persist, despite morphological and nuclear DNA analysis suggesting that both morphs and hybrids of the two species occur. The genetic integrity of these Labeo species has therefore been compromised in at least Hardap and Darlington dams. The Great Fish and Sundays populations are considered to be under threat of complete introgression. The Kat River and Slagboom Dam populations that were isolated before the IBTs have to remain isolated to protect the genetic integrity of the southern lineage of L. umbratus in these two systems.

In recent times, increasing instances of population displacement from many large dam construction projects have led to increase in anti-dam protest movements. But some of these protest movements are more successfully mobilized than others. The differences in success are largely due to the kind of political system they are based in. Studies show that formation and mobilization patterns of the protest movements are largely determined by the nature of state and its political system. However, there is lack of comparative study in this regard especially in the field of anti-dam protest movement. This thesis aims to fill that knowledge gap by comparing the anti-dam protest mobilization in Sardar Sarovar Dam, India and Three Gorges Dam, China. The Study finds that political structures have significant impact on anti-dam protest mobilization and citizens of democracy enjoy more freedom in anti-dam protest mobilization than those in authoritarian polity.

In this study, Bah&ccedil / elik Dam, which is located in Kayseri Province, is investigated by means of horizontal movement due to reservoir loading and seepage inside the core and body. Two dimensional plain strain finite element analyses are carried out in order to find total stresses, displacements and pore water pressures. Mohr-coulomb soil model is used to represent elastic behavior of rock-fill material. Since there is no information about material used in dam body, material parameters are determined by sensitivity analyses being in the range of data acquired from literature survey. Calculated displacement and pore water pressures are compared to the data taken from field survey on actual dam body. As a conclusion remark, it is beleived that the horizontal displacement behaviour of two systems, such as real dam and computer modelling, would not match excatly since the materials used in real dam body would behave as plastic whereas that used in computer modelling assumed to be elastic.

D.Phil. (Zoology) / Fish parasites may cause disease and lead to commercial losses. In order to construct practical management systems to mitigate or manage potential adverse effects, information on basic biological variables is required. Compared to the number of internationally published papers on the subject, little is known about the monogenean parasite fauna of South African fishes. Monogeneans are largely ectoparasitic, thin, flattened, host- and site specific parasites with a simple life cycle involving a single host (often a fish). They range in size between 0.3 mm and 20 mm and are mostly bilaterally symmetrical with the body subdivided into a number of regions. Attachment organs are a necessary feature both anteriorly and posteriorly, with the morphology of the prominent posterior attachment organ (opisthaptor) highly variable between genera. It may contain suckers, clamps or large hooks (anchors) as well as marginal hooks. In some genera anchors (one to two pairs) are associated with spikes or accessory sclerites and are supported by a connecting bar. All these structures, together with the sclerotized male copulatory organ, are of taxonomic significance....

Thesis (MScEng)--Stellenbosch University, 2013. / ENGLISH ABSTRACT: The study of climate change and its effect on the eutrophication of surface waters is a current and critically important study for the well-being of the entire planet. Within the same emission scenario various probable climate change models outcomes are possible that affect the water quality of a body of water. Voëlvlei is an off-channel dam that supplies water to the city of Cape Town in the Western Cape Province of South Africa. Historically, it is a eutrophic dam and with climate change, its water quality is expected to worsen. Four statistically downscaled climate models are used to produce meteorological outputs that drive the hydrodynamic and water quality model. The times simulated were the present day (1971-1990), the intermediate future (2046-2065) and the distant future (2081-2100). The operating procedure was not expected to change for the dam and inflows and withdrawals were kept the same for each of the simulation periods. The water quality model CE-QUAL-W2 version 3.6 was used. The bathymetry was validated with measured data. The model was calibrated for temperature, phosphorus loading, ammonium, nitrite-nitrates and chlorophyll-a concentration. The model was used to predict a present day situation in the dam, which was the basis from which future changes would be assessed. The main driver for algal growth other than nutrients and light was water temperature, which was linked to air temperature. With climate change, the air temperature will raise and enhance algal growth. The limiting nutrient was phosphorus during the winter and the rest of the year nitrogen limits algal growth. In the present day, the dominant algal group was the green algae. With climate change an increase in the surface water temperature will increase evaporation and cause a decrease in the yield of the dam and further concentrates the algal nutrients. The surface phosphates concentration show increases in all months but especially in autumn. The total algal growth was increased annually and especially during autumn, signalling a seasonal shift and lengthening of the bloom season. The dominant algae however are still the green algae. There will be an increase in the annual concentration of diatoms. The green algae are present in the highest concentrations when compared to diatoms and cyanobacteria. The increase in its nutrients throughout the year as well as the increased water temperature allowed for unabated growth the entire year with peaks earlier in the year during autumn. Cyanobacteria are present at the surface for the entire year at significant concentrations but with intermediate and future climate change their concentrations does not change significantly. The result for cyanobacteria was inconclusive as the inter-variability between the climate models has the greatest variability for cyanobacteria, with 2 models showing an increased concentration and 2 a decreased concentration for intermediate and future time-period. For climate change, the water quality worsens especially during winter. With climate change water quality will worsen earlier in the year confirming a seasonal shift. The modelling of dissolved oxygen proved daunting as the results indicated supersaturation. The concentration of dissolved oxygen does not vary much as would be expected due to the warmer waters. / AFRIKAANSE OPSOMMING: Die studie van klimaatsverandering en die uitwerking daarvan op die eutrofiseering van die oppervlaktewater is 'n huidige en krities belangrike studie vir die welsyn van die hele planeet. Binne dieselfde emissie scenario, is verskeie moontlike uitkomste van klimaat modelle moontlik en die invloed op die kwaliteit van die oppervlakwater. Voëlvlei is 'n buite-bedding dam wat water verskaf aan die stad van Kaapstad in die Westelike Provinsie van Suid-Afrika. Histories is dit is 'n eutrofiese dam en met die verandering van die klimaat sal die kwaliteit van die water na verwagting verswak. Vier statisties afgeskaal klimaat modelle word gebruik om meterologiese toesttande te skep en hiedie word dan gebruik as invoer vir die hidrologiese and water kwaliteits model vir die huidige situasie (1971-1990), die intermediêre toekoms (2046-2065) en die verre toekoms (2081-2100). Die bedruifs-proses vir die dam was nie verwag om te verander nie en die invloei en onttrekkings was dieselfde gehou vir elk van die simulasie periodes. Die watergehalte model CE-QUAL-W2 3.6 was gebruik. Die bathymetrie was bevestig met gemete data. Die model was gekalibreer vir temperatuur, fosfor, ammonium, nitriet-nitrate en chlorofil-a konsentrasie. Die model was gebruik om 'n huidige situasie in die dam te simuleer, wat die basis vir klimaatsveranderinge sou wees. Die vernaamste aandrywer vir die alge groei anders as voedingstowwe en lig, was water temperatuur, wat met lugtemperatuur gekoppel was. Met klimaatsverandering word die lugtemperatuur verhoog en alge groei. Die beperkende voedingstof was fosfor gedurende die winter en die res van die jaar was die dam stikstof beperk. Die dominante alge-groep in die huidige situasie was die groen alge. Met klimaatsverandering stuig die temperatuur van die oppervlakwater, verhoog verdamping, veroorsaak afname in die vlak van die dam en verhoog die konsentrasie van die alge voedingstowwe. Die oppervlak fosfate konsentrasie verhoog in al die maande veral in die herfs. Die totale alge groei jaarliks en veral gedurende die herfs, 'n teken van 'n seisoenale verskuiwing en verlenging van die blom seisoen. Die dominante alge was nog steeds groen alge. Daar sal 'n toename in die jaarlikse konsentrasie van diatome wees. Die groen alge is in die hoogste konsentrasies vergelyk met diatome en sianobakterieë. Die toename in die voedingstowwe deur die loop van die jaar, sowel as die verhoogde watertemperatuur kan vir 'n onverpoos groei vir die hele jaar, veral in die herfs. Sianobakterieë is teenwoordig vir die hele jaar op beduidende konsentrasies, maar met intermediêre en toekomstige klimaat verander die konsentrasies nie veel nie. Die resultaat vir sianobakterieë was onoortuigend as gevolg van die inter-veranderlikheid tussen die klimaats modelle, met 2 modelle wat 'n toename in konsentrasie voorspel en 2 'n afname in konsentrasie voorspel. Vir klimaatsverandering, die kwaliteit van die water vererger veral in die winter. Met klimaatsverandering skyf hierdie verswakking van water kwaliteit na vroeër in die jaar, wat bevestig 'n seisoenale skui vir verergering. Die modellering van opgeloste suurstof was uitdagende en die resultate was super-versadig. Die konsentrasie van opgeloste suurstof wissel nie veel as wat verwag sou word as gevolg van die warmer water.

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