In this thesis, we use rst principles density functional theory (DFT) to study the energetics, structural and electronic properties of hydrogenated and lithiated bilayer graphene material systems. The newly developed four variants of the non-local van der Waals (vdW) exchange-correlation functionals (vdW-DF, vdW-DF2, vdW-DF C09x and vdW-DF2 C09x) are employed to explore all the possible con gurations of hydrogen adsorption at 50% and 100% coverage on a 1 1 unit cell. The results obtained are also compared with the GGA PBE functional. For 50% hydrogen coverage, 16 unique con gurations are identi ed in the unrelaxed state. Formation energy analysis reveals six possible energetically favourable con gurations with three low-energy competing con gurations. It is found that the properties of hydrogenated bilayer graphene greatly depend on the hydrogen con guration. For instance, the formation of a hydrogen dimer within the layers decouples the structure, whereas the dimer formation outside surfaces does not have a signi cant in uence on the van der Waals forces; thus the bilayers remain coupled. In this coupled con guration, the vdW-DF C09x functional predicts the lowest formation energy and shortest interlayer separation, whereas the GGA PBE functional gives the highest formation energy and largest interlayer distance. The reasons behind the variation of these functionals are discussed. Two of the three low-energy competing con gurations exhibit semimetallic behaviour, whereas the remaining con guration is a wide band gap material. The wide band gap structure is found to undergo a hydrogen-induced spontaneous phase transformation from hexagonal to tetrahedral (diamond-like) geometry. We conclude that this wide band gap con guration represents a viable template for synthesizing nanodiamonds from graphene by hydrogenation. At 100% coverage, ten unique hydrogen con gurations are identi ed from a 1 1 unit cell. All exchange-correlation functionals predict nine of the structures to have negative formation energies. From these nine structures, three low-energy competing structures are noted and found to be wide band gap semiconductors, whereas the other con gurations exhibit either a semimetallic or metallic character. Although a 1 1 unit-cell is able to present a clear picture for the interaction between hydrogen and graphene, our results reveal that it limits the occurrence of other interesting physics. The cell size was increased to 2 1, to identify other low-energy con gurations that are not possible in a 1 1 cell. The identi ed con gurations have shown physically interesting hydrogen arrangements such as chair-like, zigzag-like and boat-like con gurations. Furthermore, our results reveal that hydrogenation reduces the elastic properties of the pristine structures. We further perform a systematic investigation of the e ects of lithium (Li) on AA and AB stacking sequences of bilayer graphene. Two Li atoms are considered to examine the e ects of the Li-Li interaction on bilayer graphene, and a total of 12 unique con gurations for AB and 9 for AA stackings are identi ed. The vdW-DF consistently predicts the highest formation energies, whereas vdW-DF2 C09x gives the lowest. Unlike in the case of the pristine structures, it is noted that for lithiated bilayer graphene, GGA PBE gives comparable results to the other functionals. One of the Li intercalated con gurations undergoes a spontaneous translation from the AB to AA stacking, and is found to be the most energetically stable con guration. We therefore conclude that Li favours the AA stacking, and that con guration represents a feasible template for experimentally synthesizing and characterizing a Li-based anode material. We noticed that all identi ed Li con gurations exhibit metallic behaviour. Lastly, we found that the intercalated Li dimer weakly interacts with the graphene layers, whereas the intercalated isolated Li atom exhibits strong interaction. / Thesis (PhD)--University of Pretoria, 2014. / gm2014 / Physics / unrestricted

The steady march of new technology depends crucially on our ability to discover and design new, advanced materials. Partially due to increases in computing power, computational methods are now having an increased role in this discovery process. Advances in this area speed the discovery and development of advanced materials by guiding experimental work down fruitful paths. Density functional theory (DFT)has proven to be a highly accurate tool for computing material properties. However, due to its computational cost and complexity, DFT is unsuited to performing exhaustive searches over many candidate materials or for extracting thermodynamic information. To perform these types of searches requires that we construct a fast, yet accurate model. One model commonly used in materials science is the cluster expansion, which can compute the energy, or another relevant physical property, of millions of derivative superstructures quickly and accurately. This model has been used in materials research for many years with great success. Currently the construction of a cluster expansion model presents several noteworthy challenges. While these challenges have obviously not prevented the method from being useful, addressing them will result in a big payoff in speed and accuracy. Two of the most glaring challenges encountered when constructing a cluster expansion model include:(i) determining which of the infinite number of clusters to include in the expansion, and (ii) deciding which atomic configurations to use for training data. Compressive sensing, a recently-developed technique in the signal processing community, is uniquely suited to address both of these challenges. Compressive sensing (CS) allows essentially all possible basis (cluster) functions to be included in the analysis and offers a specific recipe for choosing atomic configurations to be used for training data. We show that cluster expansion models constructed using CS predict more accurately than current state-of-the art methods, require little user intervention during the construction process, and are orders-of-magnitude faster than current methods. A Bayesian implementation of CS is found to be even faster than the typical constrained optimization approach, is free of any user-optimized parameters, and naturally produces error bars on the predictions made. The speed and hands-off nature of Bayesian compressive sensing (BCS) makes it a valuable tool for automatically constructing models for many different materials. Combining BCS with high-throughput data sets of binary alloy data, we automatically construct CE models for all binary alloy systems. This work represents a major stride in materials science and advanced materials development.

In this work pentacene adsorption on both flat and stepped Ag(111) surfaces were investigated by using Density Functional Theory within Projected Augmented Wave method. On the flat Ag(111) surface favorable adsorption site for a single pentacene molecule was determined to be the bridge site with an angle of 60&amp / #9702 / between pentacene molecular long axis and [011] lattice direction. Potential energy surface was found to be flat, especially along lattice directions. Diffusion and rotation barriers for pentacene on this surface were found to be smaller than 40 meV indicating the possibility of a two dimensional gas phase. Calculated adsorption energies for the flat surface indicate a weak interaction between molecule and the surface indicating physisorption. On the flat surface monolayer case is found to have lower adsorption energy than the isolated case due to pentacene&amp / #8722 / pentacene interactions. On the stepped Ag(233) surface, close to the step edge, adsorption energy increased significantly due to the stronger interaction between pentacene molecule and low coordinated silver step atoms. On the terraces of this surface, far from step edges, however a flat potential energy surface was observed similar to the case of flat Ag(111) surface. On the stepped surface pentacene found its favorable configuration as parallel to the step with a tilt angle similar to the observed thin film phase of pentacene on Ag(111) surface. Pentacene molecule showed small distortions on stepped surface and are closer to the silver step atoms 1 &Aring / more than the case of flat surface, hinting a chemical interaction as well as van der Waals interactions. However on Ag(799) surface, the perpendicular orientation of the pentacene molecule to the step direction showed no strong interaction due to less matching of carbon atoms with silver step atoms.

Energy need in transportation and industry is mainly met by fossil fuels. This causes consumption of resources and some environmental problems. Diesel and gasoline engines are developed to consume fuel efficiently in vehicles. Since these engines work in a low fuel to air ratio, it becomes difficult to reduce nitrogen oxide emission. For this reason NO x storage/reduction (NSR) catalysts have been developed. While engines are operating under lean conditions alkaline or alkaline-earth component of NSR catalysts capture nitrogen oxides and during fuel rich period stored nitrates are reduced to nitrogen and oxygen gases. To develop this technology, different system parameters, for example system components and reaction environments have been widely investigated experimentally. To supplement the experimental findings, binding energies and structural properties of NO x on different catalyst components have been investigated theoretically. It has been experimentally observed that adding TiO2 to other conventional support materials increases resistance against sulfur poisoning, which is one of the main problems concerning NSR catalysts. For this reason, in this thesis (001) and (101) anatase surfaces have been investigated. Moreover, the effects of barium oxide units and layers on the electronic properties of the (001) anatase surface have been studied. To observe the effects of TiO2 as a support component, interactions of NO2 and SO2 on the unsupported and anatase supported (100) BaO surfaces have been compared. A clear increase in sulfur resistance has been observed in the presence of TiO2 in the catalyst under certain conditions.

No description available.

Carbon nanotubes have extraordinary mechanical, electrical, thermal andoptical properties. They are harder than diamond yet exible, have betterelectrical conductor than copper, but can also be a semiconductor or evenan insulator. These ranges of properties of course make carbon nanotubeshighly interesting for many applications. Carbon nanotubes are already usedin products as hockey sticks and tennis rackets for improving strength and exibility. Soon there are mobile phones with exible screens made fromcarbon nanotubes. Also, car- and airplane bodies will probably be mademuch lighter and stronger, if carbon nanotubes are included in the construction.However, the real game changers are; nanoelectromechanical systems(NEMS) and computer processors based on graphene and carbon nanotubes.In this work, we study Young's modulus in the axial direction of carbonnanotubes. This has been done by performing density functional theorycalculations. The unit cell has been chosen as to accommodate for tubes ofdierent radii. This allows for modelling the eect of bending of the bondsbetween the carbon atoms in the carbon nanotubes of dierent radii. Theresults show that Young's modulus decreases as the radius decreases. Ineect, the Young's modulus declines from 1 to 0.8 TPa. This eect can beunderstood because the bending diminishes the pure sp^2 character of thebonds.These results are important and useful in construction, not only when usingcarbon nanotubes but also when using graphene. Our results point towardsa Young's modulus that is a material constant and, above a certain criticalvalue, only weakly dependent on the radius of the carbon nanotube.Graphene can be seen as a carbon nanotube with innite radius.

The reaction mechanism for the Selective Catalytic Reduction (SCR) of NO by NH3 on V2O5 surface was simulated by means of density functional theory (DFT) calculations performed at B3LYP/6-31G** level. As the initiation reaction, ammonia activation on V2O5 was investigated. Coordinate driving calculations showed that ammonia is adsorbed on Br&oslash / nsted acidic V-OH site as NH4 + species by a nonactivated process with a relative energy of -23.6kcal/mol. Vibration frequencies were calculated as 1421, 1650, 2857 and 2900cm-1 for the optimized geometry, in agreement with the experimental literature. Transition state with a relative energy of -17.1kcal/mol was also obtained. At the end of the Lewis acidic ammonia interaction calculations, it was observed that ammonia is hardly adsorbed on the surface. Therefore, it is concluded that the SCR reaction is initiated more favorably by the Br&oslash / nsted acidic ammonia adsorption. As the second step of the SCR reaction, NO interaction with the preadsorbed NH4 + species was investigated. Accordingly, NO interaction results in the formation of gas phase NH2NO molecule with a relative energy difference of 6.4kcal/mol. For the rest of the reaction sequence, gas phase decomposition of NH2NO was considered. Firstly, one of the hydrogen atoms of NH2NO migrates to oxygen. It then isomerizes in the second step. After that, the reaction proceeds with the isomerization of the other hydrogen. Finally, a second hydrogen atom migration to the oxygen leads to the formation of N2 and H2O. Total relative energy for this reaction series was obtained as -60.12kcal/mol, in agreement with the literature.

This represents a proof-of-concept study of the appropriateness of vibrational and NMR spectroscopy for predicting the molecular structure of large molecules on the basis of a library of small molecules. Density Functional Theory (DFT) B3LYP/6-311G was used generate all spectra. 20 model compounds comprising two multiple-ringed polynuclear aromatic hydrocarbons (PAHs) connected by varying aliphatic chain-lengths were investigated. A least squares optimization algorithm was developed to determine the contribution of molecular subunits in the model compounds. 1H and 13C NMR spectroscopy failed to identify subunits unambiguously even with a constrained library. By contrast, IR and Raman results independently identified 40% and 65% respectively and jointly more than 80 % of the aromatic groups present; however, the aliphatic chain-length was poorly defined in general. IR and Raman spectroscopy are a suitable basis for spectral decomposition and should play a greater role in the identification of ringed subunits present in ill-defined hydrocarbons / Chemical Engineering

Made available in DSpace on 2015-05-14T12:14:17Z (GMT). No. of bitstreams: 1 arquivototal.pdf: 4592851 bytes, checksum: 4953954b01488035e256132a9c9c39e2 (MD5) Previous issue date: 2013-07-26 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / This work studies through first-principles method based on Density Functional Theory (DFT) implemented by computer code SIESTA, the stability of the structures and electronic properties of hybrids nanotubes containing atoms of boron, carbon and the presence of nitrogen and an electric field. We analyze the values gap energy, formation energy and the variation of the total energy with respect to the nanotubes without application of field. For the electronic structure, there is the chart analysis of LDOS and band structure of these nanotubes as well as their polarizability. / O presente trabalho busca estudar através do método de primeiros princípios baseado na Teoria do Funcional da Densidade (DFT) implementado pelo código computacional SIESTA, a estabilidade das estruturas e propriedades eletrônicas de nanotubos híbridos contendo átomos de boro, carbono e nitrogêngio na presença de um campo elétrico. Analisar valores do gap de energia, energia de formação e a variação da energia total em relação aos nanotubos sem aplicação do campo. Para a estrutura eletrônica, há a análise dos gráficos da densidade localizada de estados (LDOS) e estrutura de bandas desses nanotubos, bem como sua polarizabilidade.

In the past decade the interest in molecular electronic devices has escalated. The synthesis of molecular crystals has improved, providing single crystals or thin films with mobility comparable with or even higher than amorphous silicon. Their mechanical flexibility admits new types of applications and usage of electronic devices. Some of these organic crystals also display magnetic effects. Furthermore, the fullerene and carbon nanotube allotropes of carbon are prominent candidates for various types of applications. The carbon nanotubes, in particular, are suitable for molecular wire applications with their robust, hollow and almost one-dimensional structure and diverse band structure. In this thesis, we have theoretically investigated carbon based materials, such as carbon nanotubes, pentacene and spiro-biphenalenyl neutral radical molecular crystals. The work mainly deals with the electron structure and the transport properties thereof. The first studies concerns effects and defects in devices of finite carbon nanotubes. The transport properties, that is, conductance, are calculated with the Landauer approach. The device setup contains two metallic leads attached to the carbon nanotubes. Structural defects as vacancies and bending are considered for single-walled carbon nanotubes. For the multi-walled carbon nanotubes the focus is on inter-shell interaction and telescopic junctions. The current voltage characteristics of these systems show clear marks of quantum dot behaviour. The influence of defects as vacancies and geometrical deformations are significant for infinite systems, but in these devices they play a minor role. The rest of the studies concern molecular crystals, treated with density-functional theory (DFT). Inspired by the enhance of the electrical conductivity obtained experimentally by doping similar materials with alkali metals, calculations were performed on bundles of single-walled carbon nanotubes and pentacene crystals doped with potassium. The most prominent effect of the potassium intercalation is the shift of Fermi level in the nanotube bands. A sign of charge transfer of the valence electrons of the potassium atoms. Semi-conducting bundles become metallic and metallic bundles gain density of states at the Fermi level. In the semi-conducting pristine pentacene crystals structural transitions occur upon doping. The herringbone arrangement of the pristine pentacene molecules relaxes to a more π-stacked structure causing more dispersive bands. The charge transfer shifts the Fermi level into the lowest unoccupied molecular orbital band and turns the crystal metallic. Finally, we have studied molecular crystals of spiro-biphenalenyl neutral radicals. According to experimental studies, some of these materials show simultaneous electrical, optical and magnetical bistability. The electronic properties of these crystals are investigated by means of DFT with a focus on the possible intermolecular interactions of radical spins.