Density functional theory (DFT) is used to study the reactivity of Pt and Pt-M (M: Pd, Co, Ni, V, and Rh) alloy catalysts towards the oxygen reduction reaction (ORR) as a function of the alloy overall composition and surface atomic distribution and compared to that on pure Pt surfaces. Reactivity is evaluated on the basis of the adsorption strength of oxygenated compounds which are intermediate species of the four-electron oxygen reduction reaction, separating the effect of the first electron-proton transfer from that of the three last electron-proton transfer steps. It is found that most homogeneous distribution PtxM catalysts thermodynamically favor the dissociation of adsorbed OOH in comparison with pure Platinum and adsorb strongly O and OH due to the strong oxyphilicity of the M elements. On the other hand, in all cases skin Platinum surfaces catalysts do not favor the dissociation of adsorbed OOH and do favor the reduction of M-O and M-OH with respect to Platinum. Considering the overall pathway of the reactions to catalyze the ORR most of the skin Platinum monolayer catalysts provide more negative free energy changes and should behave at least in a similar way than Platinum in following order: Pt3V (skin Pt) > Pt3Co (skin Pt) > Pt3Ni (skin Pt) > Pt > PtPd (skin) > Pt4Rh (skin Pt) > PtPd3 (skin ). In all cases, the reactivity is shown to be not only sensitive to the overall composition of the catalyst, but most importantly to the surface atomic distribution. Proposed electrochemical dissolution reactions of the catalyst atoms are also analyzed for the ORR catalysts, by computing the free energy changes of Platinum and bimetallic Pt-X (X: Co, Pd, Ni, and Rh) catalysts. It is found that Platinum is thermodynamically more stable than Pt-alloys in Pt3Co, Pt3Pd, Pt3Ni and Pt4Rh.

The magnetic properties of axially confined, hydrogenated single-walled carbon nanotubes (SWCNTs) of the (n,0)-type with n=5-24 are systematically explored by density functional theory. Emphasis is placed on the relation between the ground-state magnetic moments of SWCNTs and zigzag graphene nanoribbons (ZGNRs). Comparison between the SWCNTs considered here and ZGNRs of equal length gives rise to two basic questions: 1) how does the nanotube curvature affect the antiferromagnetic order known to prevail for ZGNRs, and 2) to what extent do the magnetic moments localized at the SWCNT edges deviate from the zero-curvature limit of n/3 μB? In response to these questions, it is found that systems with n≥7 display preference for antiferromagnetic order at any length investigated, whereas for n=5, 6 the magnetic phase varies with tube length. Furthermore, elementary patterns are identified that describe the progression of the magnitude of the magnetic moment with n for the longest tubes explored in this work. The spin densities of the considered SWCNTs are analyzed as a function of the tube length L, with L ranging from 3 to 11 transpolyene rings for n≥7 and from 3 to 30 rings for n=5 and 6. Magnetic carbon nanostructures are explored by density functional theory calculations on axially confined, single-walled carbon nanotubes (SWCNTs) of the (n,0)-type with n=5-24. For SWCNTs with n≥7, antiferromagnetic (AFM) order is favored energetically over ferromagnetic (FM) order for all lengths L investigated, whereas for n=5, 6 the magnetic phase varies with tube length (see picture).

The magnetic properties of axially confined, hydrogenated single-walled carbon nanotubes (SWCNTs) of the (n,0)-type with n=5-24 are systematically explored by density functional theory. Emphasis is placed on the relation between the ground-state magnetic moments of SWCNTs and zigzag graphene nanoribbons (ZGNRs). Comparison between the SWCNTs considered here and ZGNRs of equal length gives rise to two basic questions: 1) how does the nanotube curvature affect the antiferromagnetic order known to prevail for ZGNRs, and 2) to what extent do the magnetic moments localized at the SWCNT edges deviate from the zero-curvature limit of n/3 μB? In response to these questions, it is found that systems with n≥7 display preference for antiferromagnetic order at any length investigated, whereas for n=5, 6 the magnetic phase varies with tube length. Furthermore, elementary patterns are identified that describe the progression of the magnitude of the magnetic moment with n for the longest tubes explored in this work. The spin densities of the considered SWCNTs are analyzed as a function of the tube length L, with L ranging from 3 to 11 transpolyene rings for n≥7 and from 3 to 30 rings for n=5 and 6. Magnetic carbon nanostructures are explored by density functional theory calculations on axially confined, single-walled carbon nanotubes (SWCNTs) of the (n,0)-type with n=5-24. For SWCNTs with n≥7, antiferromagnetic (AFM) order is favored energetically over ferromagnetic (FM) order for all lengths L investigated, whereas for n=5, 6 the magnetic phase varies with tube length (see picture).

Organic molecules are known for their stability due to aromaticity. Superhalogens, on the other hand, are highly reactive anions, whose electron affinity is larger than that of chlorine. This thesis, using first principles calculations, explores possible methods for creation of superhalogen aromatic molecules while attempting to also develop a fundamental understanding of the physical properties behind their creation. The first method studied uses anionic cyclopentadienyl and enhances its electron affinity through ligand substitution or ring annulation in combination with core substitutions. The second method studies the possibilities of using benzene, which has a negative electron affinity (EA), as a core to attain similar results. These cases resulted in EAs of 5.59 eV and 5.87 eV respectively, showing that aromaticity rule can be used to create strong anionic organic molecules. These studies will hopefully lead to new advances in the development of organic based technology.

Utilizando a Teoria do Funcional da Densidade junto com o formalismo do pseudopotencial de primeiros princípios, realizamos um estudo sistemático do processo de adsorção da molécula de oxigênio sobre a superfície livre de CdTe (110) nas reconstruções 1x1, 1x2 e 2x1. Este estudo consistiu na determinação das adsorções energeticamente favoráveis e na viabilidade de suas formações através da análise das barreiras de ativação. Nossas análises indicam que apenas uma molécula de oxigênio adsorve sobre a superfície livre em uma reconstrução 1x1 e que não ocorre a quebra da molécula durante o processo de adsorção. As estruturas formadas foram divididas nos regimes de baixas e altas temperaturas. Do estudo das barreiras de ativação verificamos que no regime de baixas temperaturas a molécula de oxigênio liga-se exclusivamente ao Cd da primeira camada através de ligações Cd-O-O ou Cd-O2. A configuração da superfície de CdTe com a molécula adsorvida, se assemelha a configuração do cristal. As estruturas de faixas de energia neste regime apresentam um estado característico de defeito duplo aceitador. Para o regime de altas temperaturas, a molécula adsorve entre o Cd da primeira camada e o Te da segunda camada, quebrando esta ligação Cd-Te e também quebrando a ligação que o Cd da segunda camada realiza com o Te da terceira camada. O complexo formado apresenta ligações Cd-O, Cd-O2, Te-O e O-O e as estruturas de faixas de energia apresentam um gap indireto entre os pontos gama e X de 1.30 eV. / Density Functional Theory with first-principles pseudopotential formalism have been used to a systematic research of the oxygen molecule adsorption on the free surface of CdTe(110) in the 1x1, 1x2 and 2x1 reconstructions. This research was based on the determination of the adsorptions energetically favorables and the viability of each formation through their activation barriers analysis. This analysis indicates that only one oxygen molecule adsorbs over the free surface of the CdTe(110) in the 1x1 reconstruction and that the dissociation of the molecule does not occur during the adsorption process. The structures were divided on the high and low temperature regimes. From the activation barriers study it was verified that on the regime of low temperatures the oxygen molecule bind exclusively to the Cd of the first layer through the Cd-O-O or Cd-O$_2$ bonds. The CdTe surface configuration with the adsorbed molecule looks like a crystal configuration. The energy band structure, on this regime, shows a characteristic state of double acceptor defect. For the high temperature regime the molecule adsorbs between the Cd of the first layer and the Te of second layer, breaking the Cd-Te bond between them and also breaking the bonds that the Cd of the second layer does with the third layer. The complex shows Cd-O, Cd-O2, Te-O and O-O bonds and the energy band structure shows an indirect gap between the gamma and X points of 1.30eV.

Since materials properties are determined by the interactions between the constituent atoms, an accurate description of the inter-atomic interactions is crucial to characterize and control material properties. Particularly, a quantitative understanding of the formation and nature of defects and impurities becomes increasingly important in the era of nanotechnology, as the imperfections largely influence many properties of nanoscale materials. Indeed, due to its technological importance and scientific interest, there have been significant efforts to better understand their behavior in semiconductors and oxides, and their interfaces, yet many fundamental aspects are still ambiguous due largely to the difficulty of direct characterization. Hence, our study has focused on developing a better understanding of atomic-scale defects and impurities using first principles quantum mechanical calculations. In addition, based on the improved understanding, we have attempted to address some engineering problems encountered in the current technology. The first part of this thesis focuses on mechanisms underlying the transient enhanced diffusion of arsenic (As) during post-implantation annealing by examining the interaction of As with vacancies in silicon. In the second part, we address some fundamental features related to plasma-assisted nitridation of silicon dioxide; this study shows that oxygen vacancy related defects play an important role in (experimentally observed) peculiar nitridation at the Si/SiO2 interface during post O2 annealing. In the third part, we examine the interaction between vacancies and dopants in sp2–bonded carbon such as graphene and nanotube, specifically the formation and dynamics of boron-vacancy complexes and their influence on the electrical properties of host materials. In the fourth part, we study the interfacial interaction between amorphous silica (a-SiO2) and graphene in the presence of surface defects in a-SiO2; this study shows possible modifications in the electronic structure of graphene upon the surface defect assisted chemical binding onto the a-SiO2 surface. In the last part, we examine the structural and electronic properties of bismuth vanadate (BiVO4) which is a promising photocatalyst for water splitting to produce hydrogen; this study successfully explains the underlying mechanism of the interesting photocatalytic performance of BiVO4 that has been experimentally found to strongly depend on structural phase and doping. / text

Utilizando a Teoria do Funcional da Densidade junto com o formalismo do pseudopotencial de primeiros princípios, realizamos um estudo sistemático do processo de adsorção da molécula de oxigênio sobre a superfície livre de CdTe (110) nas reconstruções 1x1, 1x2 e 2x1. Este estudo consistiu na determinação das adsorções energeticamente favoráveis e na viabilidade de suas formações através da análise das barreiras de ativação. Nossas análises indicam que apenas uma molécula de oxigênio adsorve sobre a superfície livre em uma reconstrução 1x1 e que não ocorre a quebra da molécula durante o processo de adsorção. As estruturas formadas foram divididas nos regimes de baixas e altas temperaturas. Do estudo das barreiras de ativação verificamos que no regime de baixas temperaturas a molécula de oxigênio liga-se exclusivamente ao Cd da primeira camada através de ligações Cd-O-O ou Cd-O2. A configuração da superfície de CdTe com a molécula adsorvida, se assemelha a configuração do cristal. As estruturas de faixas de energia neste regime apresentam um estado característico de defeito duplo aceitador. Para o regime de altas temperaturas, a molécula adsorve entre o Cd da primeira camada e o Te da segunda camada, quebrando esta ligação Cd-Te e também quebrando a ligação que o Cd da segunda camada realiza com o Te da terceira camada. O complexo formado apresenta ligações Cd-O, Cd-O2, Te-O e O-O e as estruturas de faixas de energia apresentam um gap indireto entre os pontos gama e X de 1.30 eV. / Density Functional Theory with first-principles pseudopotential formalism have been used to a systematic research of the oxygen molecule adsorption on the free surface of CdTe(110) in the 1x1, 1x2 and 2x1 reconstructions. This research was based on the determination of the adsorptions energetically favorables and the viability of each formation through their activation barriers analysis. This analysis indicates that only one oxygen molecule adsorbs over the free surface of the CdTe(110) in the 1x1 reconstruction and that the dissociation of the molecule does not occur during the adsorption process. The structures were divided on the high and low temperature regimes. From the activation barriers study it was verified that on the regime of low temperatures the oxygen molecule bind exclusively to the Cd of the first layer through the Cd-O-O or Cd-O$_2$ bonds. The CdTe surface configuration with the adsorbed molecule looks like a crystal configuration. The energy band structure, on this regime, shows a characteristic state of double acceptor defect. For the high temperature regime the molecule adsorbs between the Cd of the first layer and the Te of second layer, breaking the Cd-Te bond between them and also breaking the bonds that the Cd of the second layer does with the third layer. The complex shows Cd-O, Cd-O2, Te-O and O-O bonds and the energy band structure shows an indirect gap between the gamma and X points of 1.30eV.

No / A crystal structure prediction (CSP) study of three small, rigid and structurally related organic compounds (differing only in the position and number of methyl groups) is presented. A tailor-made force field (TMFF; a non-transferable force field specific for each molecule) was constructed with the aid of a dispersion-corrected density functional theory method (the hybrid method). Parameters for all energy terms in each TMFF were fitted to reference data generated by the hybrid method. Each force field was then employed during structure generation. The experimentally observed crystal structures of two of the three molecules were found as the most stable crystal packings in the lists of their force-field-optimised structures. A number of the most stable crystal structures were re-optimised with the hybrid method. One experimental crystal structure was still calculated to be the most stable structure, whereas for another compound the experimental structure became the third most stable structure according to the hybrid method. For the third molecule, the experimentally observed polymorph, which was found to be the fourth most stable form using its TMFF, became the second most stable form. Good geometrical agreements were observed between the experimental structures and those calculated by both methods. The average structural deviation achieved by the TMFFs was almost twice that obtained with the hybrid method. The TMFF approach was extended by exploring the accuracy of a more general TMFF (GTMFF), which involved fitting the force-field parameters to the reference data for all three molecules simultaneously. This GTMFF was slightly less accurate than the individual TMFFs but still of sufficient accuracy to be used in CSP. A study of the isostructural relationships between these molecules and their crystal lattices revealed a potential polymorph of one of the compounds that has not been observed experimentally and that may be accessible in a thorough polymorph screen, through seeding, or through the use of a suitable tailor-made additive.

No / A crystal ball? A new method for crystal structure prediction combines a tailor-made force field with a density functional theory method incorporating a van der Waals correction for dispersive interactions. In a blind test, the method predicts the correct crystal structure for all four compounds, one of which is a cocrystal. The picture shows the predicted structure of one of the compounds in green and the experimental structure in blue.

Quantum chemical calculations at the gradient-corrected (BP86) density-functional calculations with various basis sets (SVP, TZVPP) have been carried out for Mo(CO)4 complexes of Nheterocyclic carbene and analogues-NHEMe (called tetrylenes) with E = C, Si, Ge, Sn, Pb. The equilibrium structures of complexes [Mo(CO)4-NHEMe] (Mo4-NHEMe) exhibit an interesting trend which the lightest adduct Mo4-NHCMe has a trigonal bipyramidal coordination mode where the ligand NHCMe occupies an equatorial position. In contrast, the heavier species from Mo4-NHSiMe to Mo4-NHPbMe possess a square pyramidal structure where the ligands from NHSiMe to NHPbMe occupy a basal position. The slighter complexes Mo4-NHEMe possess end-on-bonded NHEMe ligands when E = C, Si, Ge with the bending angles, α, are 180° whereas the heavier adducts Mo4-NHSnMe and Mo4-NHPbMe exhibit strongly side-on-bonded ligands which the bending angle, α become more acute. The trend of the bond dissociations energies-De [kcal/mol] (BDEs) for the Mo-E bonds is Mo4-NHCMe > Mo4-NHSiMe > Mo4-NHGeMe > Mo4-NHSnMe > Mo4-NHPbMe. Bonding analysis shows that the Mo-E bonds have a significant contribution from (CO)4Mo ← NHEMe π-donation. This is because the energy levels of the π-type donor orbitals of Mo4-NHCMe − Mo4-NHPbMe are higher lying than the σ-type donor orbitals. The NHEMe ligands in Mo4- NHEMe are strong electron donors. This review intends to provide a comprehensive data for plant biology research in the future. / Tính toán hóa lượng tử sử dụng lý thuyết phiếm hàm mật độ kết hợp điều chỉnh gradient (BP86) từ các bộ hàm cơ sở khác nhau (SVP, TZVPP) được thực hiện cho việc tính toán lý thuyết của phức giữa Mo(CO)4 và phối tử N-heterocyclic carbene và các phức tương tự NHEMe (gọi là tetrylenes) với E = C, Si, Ge, Sn, Pb. Cấu trúc của phức [Mo(CO)4-NHEMe] (Mo4-NHEMe) thể hiện sự khác biệt khá thú vị từ Mo4-NHCMe đến Mo4-NHPbMe, phức Mo4-NHCMe có cấu trúc phối trí lưỡng tháp tam giác trong đó phối tử NHCMe chiếm ở vị trí xích đạo. Ngược lại, những phức có phân tử khối lớn hơn từ Mo4-NHSiMe đến Mo4-NHPbMe lại có cấu trúc tháp vuông và các phối tử từ NHSiMe đến NHPbMe chiếm vị trí cạnh (basal – cạnh hướng về bốn đỉnh của đáy vuông). Các cấu trúc của phức Mo4-NHEMe cho thấy các phối tử NHEMe với E = C-Ge tạo với phân tử Mo(CO)4 một góc thẳng α =180.0°, ngược lại, các phức nặng hơn Mo4-NHEMe thì phối tử NHEMe với E = Sn, Pb liên kết với phân tử Mo(CO)4 tạo góc cong và góc cong, α, càng trở nên nhọn hơn khi nguyên tử khối của E càng lớn. Năng lượng phân ly liên kết của liên kết Mo- E giảm dần: Mo4-NHCMe > Mo4-NHSiMe > Mo4-NHGeMe > Mo4-NHSnMe > Mo4-NHPbMe. Phân tích liên kết Mo-E cho thấy có sự đóng góp đáng kể của sự cho liên kết π (CO)4Mo ← NHEMe. Điều này có thể do mức năng lượng của orbital π-cho của Mo4-NHCMe − Mo4-NHPbMe nằm cao hơn orbital σ-cho. Từ kết quả tính toán có thể kết luận rằng phối tử NHEMe trong phức Mo4- NHEMe là chất cho điện tử mạnh. Kết quả nghiên cứu lý thuyết về hệ phức Mo4-NHEMe lần đầu tiên cung cấp một cơ sở dữ liệu hoàn chỉnh cho các nghiên cứu về sinh học thực vật trong tương lai.