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Liquid crystal NMR: director dynamics and small solute moleculesKantola, A. M. (Anu M.) 03 December 2009 (has links)
Abstract
The subjects of this thesis are the dynamics of liquid crystals in external electric and magnetic fields as well as the magnetic properties of small molecules, both studied by liquid crystal nuclear magnetic resonance (LC NMR) spectroscopy. Director dynamics of a liquid crystal 5CB in external magnetic and electric fields was studied by deuterium NMR and spectral simulations. A new theory was developed to explain the peculiar oscillations observed in the experimental spectra collected during fast director rotation. A spectral simulation program based on this new theory was developed and the outcome of the simulations was compared with the experimental results to verify the tenability of the theory.
In the studies on the properties of small solute molecules, LC NMR was utilised to obtain information about anisotropic nuclear magnetic interaction tensors. The nuclear magnetic shielding tensor was studied in methyl halides, the spin-spin coupling tensor in methyl mercury halides and the quadrupolar coupling tensor in deuterated benzenes. The effects of small-amplitude molecular motions and solvent interactions on the obtained parameters were considered in each case. Finally, the experimental results were compared to the corresponding computational NMR parameters calculated in parallel with the experimental work.
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Rmn du deuterium en abondance naturelle en milieu oriente chiral et achiral : une nouvelle approche analytique pour la détermination du fractionnement isotopique site-spécifique d'acides gras / Natural abundance deuterium NMR in chiral and achiral oriented media : a new analytical approach for determining the site-specific isotopic fractionation of fatty acidsSerhan, Zeinab 21 December 2011 (has links)
La spectroscopie RMN 2D du deutérium en abondance naturelle (DAN) en utilisant les cristaux liquides chiraux comme solvant de RMN est une méthodologie efficace pour deux raisons: i) l’interaction quadrupolaire (interaction RMN sensible à l’ordre orientationnel des molécules et spécifique aux noyaux de spin I>1/2) n’est plus nulle en moyenne comme dans les liquides; ii) la chiralité du milieu permet de discriminer spectralement des énantiomères (molécule chirale) ou des directions énantiotopes (molécule prochirale). L'objectif principal de ce travail de Thèse était d'explorer le potentiel analytique de cette technique pour analyser le fractionnement isotopique naturel deutérium dans le cas d’ester d’acides gras saturés (AGS) et (poly)insaturés (AGI). Le but ultime de ce travail est de fournir de nouvelles informations (de nature stéréochimique) pour améliorer la compréhension de certains mécanismes enzymatiques impliqués au cours de leur biosynthèse. Dans ce contexte, nous avons montré que l'utilisation de solutions organiques orientées de polypeptides (mésophases chirales) utilisant des co-solvants polaires comme le DMF ou la pyridine (Py) fournissait les meilleurs résultats en termes d’(énantio)discrimination spectrale (nombre de sites et amplitude) sur la base des déplacements chimiques et des éclatements quadrupolaires du deutérium. Ainsi, la mésophase chirale (PBLG/Py) a été utilisée avec succès pour analyser les AGI comme le linoléate de méthyle (C18), pour lequel nous avons pu mesurer l'excès énantio-isotopomèrique (eei) au niveau de chaque site méthylène de la molécule. Pour la première fois, d'importantes informations relatives à la stéréochimie des mécanismes enzymatiques, inaccessibles par la méthode conventionnelle SNIF-NMR®, ont été déterminées. La même méthodologie impliquant la mésophase achirale (PBG/Py) et chirale (PBLG/Py) s’est révélée également être un excellent outil pour l'analyse des SAFA sous leur forme libre (C14 à C18) ou sous leur forme de triglycérides (3*C4 et 3*C14). L'attribution des doublets 2H détectés sur les spectres RMN 2D anisotropes des SAFA a été confirmée par l'élaboration d'un modèle théorique capable de prédire le comportement orientationnel de ces molécules flexibles. Comme exemple illustratif, la méthode a été appliquée pour étudier les mécanismes enzymatiques convertissant le linoléate en vernoléate dans deux plantes différentes. Enfin, pour améliorer la compréhension des interactions «soluté-polypeptide» impliquées dans les mécanismes d'orientation et d’énantio-discrimination, nous avons étudié par RMN 2D DAN, l'évolution des paramètres d'ordre (matrice de Saupe) de deux molécules prochirales, rigides et apolaires dissoutes dans une mésophase chirale préparée en mélangeant deux polypeptides de même stéréochimie (L), mais dont la nature chimique des chaînes latérales est différente, en fonction de leur proportion massique respective. / Natural abundance deuterium (NAD) 2D-NMR spectroscopy using (a)chiral liquid crystals as NMR solvent is a powerful method for two reasons: i) the quadrupolar interaction (an order-sensitive NMR interaction specific to spins I > ½) is not averaged to zero anymore as in liquids; ii) the chirality of medium allows enantiomers (chiral molecule) or enantiotopic directions (prochiral molecule) to be spectrally discriminated. The main objective of this Thesis work was to explore the analytical potential of this technique to analyze the natural distribution of deuterium in the case of esters of saturated fatty acids (SAFA) and (poly)unsaturated fatty acids (PUFA). The ultimate goal of this research is to collect new (stereochemical) information to improve the understanding of some enzymatic mechanisms involved during their biosynthesis. In this context, we have shown that the use of oriented solutions of polypeptide (chiral mesophases) using polar co-solvents such as DMF or pyridine (py) provided better results in terms of spectral (enantio)discrimination (number of sites and magnitude) on the the basis of chemical shifts and deuterium quadrupole splittings. Thus, the chiral mesophase (PBLG/py) has been applied successfully to analyse PUFA’s like the methyl linoleate (C18) for which we could measure the enantio-isotopomeric excess (eie) at each methylen site of the molecule. For the first time, important information related to the stereochemistry of enzymatic mechanisms, inaccessible by the conventional method SNIF-NMR®, have been determined. The same methodology using achiral (PBG / py) and chiral (PBG / py) mesophases, revealed also to be an excellent tool for analysing SAFA in their free form (C14 to C18), or in triglyceride forms (3*C4 and 3*C14). The assignment of 2H doublets detected on 2D-NMR spectra of SAFA’s was confirmed by developing a theoretical model predicting the orientational ordering behavior of these flexible molecules. As illustrative exemple, the method was applied for investigating the enzymatic mechanisms converting the linoleate into vernoleate in two different plants. Finally, to improve the understanding of “solute/polypeptide" interactions involved in the orientation and enantiodiscrimination mechanisms, we have investigated by NAD 2D-NMR the evolution of the order parameters (Saupe matrix) of two apolar, rigid prochiral molecules dissolved in a chiral mesophase made by mixing two polypeptides having the same stereochemistry (L) but different type of side chains, versus their respective mass proportion.
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Biophysical studies of cholesterol in unsaturated phospholipid model membranesWilliams, Justin A. January 2013 (has links)
Indiana University-Purdue University Indianapolis (IUPUI) / Cellular membranes contain a staggering diversity of lipids. The lipids are heterogeneously
distr
ibuted to create regions, or domains, whose physical properties differ from the bulk
membrane and play an essential role in modulating the function of resident proteins. Many
basic questions pertaining to the formation of these lateral assemblies remain. T
his research
employs model membranes of well
-
defined composition to focus on the potential role of
polyunsaturated fatty acids (PUFAs) and their interaction with cholesterol (chol) in restructuring
the membrane environment. Omega
-
3 (n
-
3) PUFAs are the main
bioactive components of fish
oil, whose consumption alleviates a variety of health problems by a molecular mechanism that is
unclear. We hypothesize that the incorporation of PUFAs into membrane lipids and the effect
they have on molecular organization may be, in part, responsible. Chol is a major constituent in
the plasma membrane of mammals. It determines the arrangement and collective properties of
neighboring lipids, driving the formation of domains via differential affinity for different lipids
. T
he m
olecular organization of 1
-[
2
H
31
]palmitoyl
-2-
eicosapentaenoylphosphatidylcholine (PEPC
-
d
31
) and 1
-[
2
H
31
]palmitoyl
-2-
docosahexaenoylphosphatidylcholine (PDPC
-d
31
) in membran
es with
sphingomyelin (SM) and chol (1:1:1 mol) was compared
by solid
-
state
2
H NMR spectroscopy.
Eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids are the two major n
-
3 PUFAs found in
fish oil, while PEPC
-d
31
and PDPC
-d
31
are phospholipids containing the respective PUFAs
at the
sn
-
2 position and a perdeuterated palmitic acid a
t the sn
-
1 position
.
Analysis of s
pectra
recorded as a function of temperature indicate
s
that in both cases, formation of PUFA
-
rich (less
ordered) and SM
-
rich (more ordered) domains occurred. A surprisingly substantial proportion of
PUFA was found to infil
trate the more ordered domain. There was almost twice as much DHA
(65%) as EPA (30%)
. The implication is
that n
-
3 PUFA
s
can incorporate
into lipid rafts, which
are
domains
enriched in SM and chol in the plasma membrane,
and
potentially
disrupt the activity of signaling proteins that reside therein. DHA, furthermore, may be the more potent component
of fish oil.
PUFA
-
chol interactions were also examined through affinity measurements. A novel method
utilizing electron paramagnetic resonance (EPR) was develope
d, to monitor
the partitioning of a
spin
-
labeled
analog
of chol
, 3β
-
doxyl
-
5α
-
cholestane (chlstn), between large unilamellar vesicles
(LUVs) and met
hyl
-
β
-
cyclodextrin (mβCD). The EPR spectra for
chlstn in the two environments
are distinguishable due to the substantial differences in tumbling rates
, allowing
the
population
distribution
ratio to
be determined by spectral simulation. Advantages of this approach include
speed of implementation and a
vo
idance of potential
artifact
s associated with
physical
separation of LUV and mβCD
. Additionally, in a check of the method, t
he relative partition
coefficients between lipids measured for the spin label analog agree with values obtained for
chol by isothermal titration calorimetry (ITC). Results from LUV with different composition
confirmed
a hierarchy of
decreased
sterol affinity for phospholipids with increasing
acyl chain
unsaturation
, PDPC possessing half the affinity of the corresponding monounsaturated
phospholipid.
Taken together, the results of
these studies
on model membranes demonstrate the potential for
PUFA
-
driven alteration of the architecture of biomembranes, a mechanism through which
human health may be impacted.
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