Doctor of Philosophy / Department of Mathematics / Yan S. Soibelman / The motivic Donaldson-Thomas theory of 2-dimensional Calabi-Yau categories can be induced from the theory of 3-dimensional Calabi-Yau categories via dimensional reduction. The cohomological Hall algebra is one approach to the motivic Donaldson-Thomas invariants. Given an arbitrary quiver one can construct a double quiver, which induces the preprojective algebra. This corresponds to a 2-dimensional Calabi-Yau category. One can further construct a triple quiver with potential, which gives rise to a 3-dimensional Calabi-Yau category. The critical cohomological Hall algebra (critical COHA for short) is defined for a quiver with potential. Via the dimensional reduction we obtain the cohomological Hall algebra (COHA for short) of the preprojective algebra. We prove that a subalgebra of this COHA consists of a semicanonical basis, thus is related to the generalized quantum groups. Another approach is motivic Hall algebra, from which an integration map to the quantum torus is constructed. Furthermore, a conjecture concerning some invariants of 2-dimensional Calabi-Yau categories is made. We investigate the correspondence between the A∞-equivalent classes of ind-constructible 2-dimensional Calabi-Yau categories with a collection of generators and a certain type of quivers. This implies that such an ind-constructible category can be canonically reconstructed from its full subcategory consisting of the collection of generators.