This thesis discusses the development of a naval ship distributed system architectural framework and related design tools that can be used during ship Concept and Requirements Exploration (CandRE). This architectural framework includes architectures for ship operations, the physical arrangement of Mission Power and Energy Systems (MPES) vital components within the ship, the logical relationship between MPES vital components, and simple energy and data models of MPES functions. This architectural framework is implemented through integrated Ship Behavior Interaction Models (SBIMs) that include the following: Warfighting Model (WM), Ship Operational Model (OM), Capability Model (CM), and Dynamic Architecture Flow Optimization (DAFO). These models provide a critical interface between logical and operational architectures, quantifying warfighting capabilities through system measures of performance at specific capability nodes. These models' interface with each other in the warfighting environment to guide the alignment of MPES vital systems using a DAFO. The integrated models quantify the performance of tasks enabled by capabilities through system measures of performance at specific capability nodes, enabling the simulation of the MPES configuration in operational situations. / Master of Science / This thesis discusses the development of a naval ship distributed system architectural framework and related design tools that can be used during ship Concept and Requirements Exploration (CandRE). This architectural framework includes architectures for ship operations, the physical arrangement of Mission Power and Energy Systems (MPES) within the ship, the logical relationship between MPES, and simple energy and data models of MPES. This architectural framework is implemented through integrated Ship Behavior Interaction Models (SBIMs) that include the following: Warfighting Model (WM), Ship Operational Model (OM), Capability Model (CM), and Dynamic Architecture Flow Optimization (DAFO). These models provide a critical interface between logical and operational architectures, quantifying warfighting capabilities through system measures of performance. These models' interface with each other in the warfighting environment to guide the alignment of MPES during operations. The integrated models quantify the performance of tasks enabled by capabilities through system measures of performance at specific capability nodes, enabling the simulation of the MPES configuration in operational situations.