No description available.

No description available.

During the elongation of the polypeptide chain in eukaryotic protein synthesis, GTP-bound eukaryotic translation elongation factor 1A recruits the aminoacyl tRNA to the A-site of the ribosome. The GDP-GTP recycling is catalysed by the elongation factor 1B complex (eEF1B) which in higher eukaryotes consists of three different subunits: alpha, delta and gamma. Previous studies on eEF1B focused mainly on biochemical analysis and reports of overexpression in tumours and correlation to decreased survival rate but not a lot is known about is biology. The aim of this PhD is to characterise the eEF1B subunits at the molecular level in view of their potential involvement in tumourigenesis using a variety of bioinformatic and laboratory techniques. All three subunits were found to be ubiquitously expressed at mRNA and protein levels in all mouse tissues analysed. In addition, eEF1Bβ has several transcript variants in mice derived from alternative splicing and multiple isoforms, including a brain and testis specific heavier isoform and a muscle-specific form in addition to other forms. The characteristics of each eEF1B subunit were catalogued by further bioinformatic analysis. eEF1Bα was not detectable at early mouse developmental stages, eEF1Bβ showed stronger expression at pre-natal and early post-natal stages than adult stage whereas eEF1Bγ is ubiquitously expressed at similar levels throughout mouse development. In adult mice and human tissues, eEF1B subunits appeared to be expressed in different cell types and cell sub-populations. Surprisingly, cytoplasmic and some nuclear expression was observed in vivo. This nuclear expression pattern could not be observed in cell lines and it was not related to the cell cycle stage in vitro. The expression of eEF1B subunits did not change during the cell cycle except eEF1Bγ which was highly expressed in S-phase arrested cells. Knockdown by siRNAs of eEF1B subunits leads to decreased proliferation, increased number of cells in G0/G1 phase and increase in apoptosis in HeLa, HCT116, DLD1 and HepG2 cells. In contrast, overexpression in HeLa cells with a V5-tagged constructs lead to increased proliferation, increased number of cells in the G2/M phase and increased viability. Knockdown of eEF1Bα and eEF1Bβ leads to a reduction in eEF1Bγ levels; it is therefore possible that the phenotype shown by the knockdown of each subunit individually might be due to the reduced levels of eEF1Bγ. However, overexpression of each subunit did not affect the protein levels of the other subunits. The presence of multiple forms, the complex expression pattern and distribution of each eEF1B subunit in mouse and human tissues, and the knockdown and overexpression effect on cells suggests that the eEF1B complex might have different quaternary forms throughout development and in different cell types, possibly a more intricate role in translation, potential non-canonical functions any of which may be implicated in the potential role of eEF1B subunits in tumourgenesis.

Shigella flexneri is a bacterial pathogen which causes dysentery by invading the epithelial cells of the colon. In order to survive and replicate inside the host, S. flexneri requires many genes present on both its chromosome and the large virulence plasmid it carries. This study examines which genes are required for infection of cultured epithelial cells in order to understand which processes are used by S. flexneri during the infection process. This analysis pinpointed genes involved in metabolism, LPS synthesis, protein homeostasis and virulence effector proteins. The role of Elongation factor P (EF-P) in S. flexneri virulence is also investigated in this study. EF-P is a bacterial translation factor that is post-translationally modified with a [Beta]-lysine by the action of PoxA. Here it is shown that both EF-P and PoxA are necessary for virulence of S. flexneri. Loss of either EF-P or PoxA leads to an impaired ability of S. flexneri to invade epithelial cells. Proteomic analysis of efp and poxA deletion mutants revealed decreased levels of several virulence effector proteins, as well as proteins for the biosynthesis of the siderophore aerobactin. Virulence proteins were affected due to decreased levels of the master virulence regulator VirF. Reduction in VirF transcription is likely due to decreased levels of CpxA, which activates virF through the response regulator CpxR. The role of CpxAR in reduced synthesis of VirF and its downstream effectors was confirmed by showing increased invasion when a mutation resulting in constitutively vii activated CpxR was introduced into the efp mutant. Thus, modified EF-P is one of the chromosomal factor necessary for the virulence of this bacterial pathogen. / text

Fiber elongation (ability to stretch before breaking) is one of the key components in determining overall yarn quality. Elongation in U.S. upland cotton (G. hirsutum L.) has remained largely neglected due to: absence of monetary incentives for growers to produce high elongation cotton; lack of research interests among breeders; and absence of a reliable fiber testing system for elongation. This study was conducted to determine the genetics of cotton fiber elongation via a diallel and generation means analysis (GMA). Findings from this study should lay the foundation for future breeding work in cotton fiber elongation. Of the seven distinctive upland parents used for the diallel study, general combining ability was far more prominent than specific combing ability for fiber elongation. Cultivar PSC 355 and Dever experimental line were the two parents identified as good combiners for fiber elongation in this study. The slight negative correlation between fiber elongation and strength remained true. Highly significant negative correlation was observed between fiber upper half mean length and elongation. Both Stelometer and HVI elongation measurements correlated well with values of 0.85 and 0.82 in 2010 and 2011, respectively. For the six families used in the GMA analysis, additive genetic control was prevalent over dominance effect. Based on the scaling test, no significant epistatic interaction was detected for fiber elongation. As expected, additive variance constituted a much larger portion of total genetic variation in fiber elongation than the dominance variance. On average, larger numbers of effective factor were identified in fiber elongation than all other fiber traits tested, suggesting that parents used in the GMA study are carrying different genetic materials/ loci for fiber elongation. Considerable gains in fiber elongation may be achieved by selectively crossing these materials in a pure-line breeding scheme while holding other important fiber traits constant.

Le résonateur étudié s'insère dans un projet industriel porté par NXP Semiconductors. L'objectif est la réalisation d'un résonateur MEMS RF intégrable en vue de remplacer le quartz dans certaines applications. La compatibilité du procédé de fabrication avec les technologies utilisées par la société et le faible coût de production représentent les principaux enjeux du projet. Le résonateur TFEAR (Thin Film Elongation Acoustic Resonator) est un barreau, constitué d'une superposition de couches minces de type Métal/AlN/Métal. Les propriétés piézoélectriques du nitrure d'aluminium (AlN) sont ainsi exploitées : l'application d'un champ électrique alternatif, parallèle à l'épaisseur du barreau, entraîne une propagation d'ondes acoustiques suivant sa longueur. Les dimensions des résonateurs fabriqués correspondent à des fréquences de résonance comprises entre 10MHz et 50MHz. Cette thèse s'intéresse la modélisation et à la caractérisation électrique du résonateur TFEAR. Les modèles théoriques sont développés par simulations numériques 3D et par calculs analytiques 1D. Le comportement électrique du TFEAR est décrit par un schéma équivalent, dont les éléments sont exprimés en fonction des paramètres physiques et des pertes des matériaux le constituant. Un facteur de qualité de 2250 sur un TFEAR résonant à 25,79MHz et dont la résistance motionnelle est de 2,1 kOhms a été relevé. Ces mesures ont été complétées par la caractérisation des paramètres physiques de la couche piézoélectrique. Par exemple, des valeurs de coefficient piézoélectrique d33f atteignant 2,6 pm/V ont été relevées (pour un maximum théorique de 3,93 pm/V) / The studied resonator is part of an industrial project carried by NXP Semiconductors. The objective is the realization of a integrable RF MEMS resonator in order to replace quartz in some applications. The compatibility of the manufacturing process with the technologies used by the company and low cost production represent the main challenges of the project. The resonator TFEAR (Thin Film Elongation Acoustic Resonator) is a bar, consisting of a superposition of thin film type Metal/AlN/metal. The piezoelectric properties of aluminum nitride (AlN) are exploited : the application of an alternating electric field, parallel to the thickness of the bar, resulting in propagation of acoustic waves along its length. The sizes of the manufactured resonators correspond to resonant frequencies between 10MHz to 50 MHz. This thesis focuses on modeling and electrical characterization of the TFEAR resonator. The models are developed by 3D numerical simulations and by 1D analytical calculations. The electrical behavior of TFEAR is described by an equivalent circuit which elements are expressed in terms of physical parameters and losses of the constituent materials. A quality factor of 2250 on a 25.79MHz resonant TFEAR which motional resistance is 2.1 kOhms has been noticed. These measurements were completed by the characterization of the physical parameters of the piezoelectric layer. For example, piezoelectric coefficient d33;f values were recorded up to 2.6 pm/V (for a theoretical maximum of 3.93pm/V)

Phaeodactylum et Nannochloropsis sont des espèces photosynthétiques modèles pour le métabolisme des glycérolipides, se distinguant par un enrichissement en acides gras polyinsaturés à très longues chaînes (VLC-PUFA) et de grandes quantités en triacylglycérol (TAG). Les proportions des différents lipides sont influencées par des facteurs environnementaux. Nous avons caractérisé le remodelage lipidique chez Phaeodactylum en réponse à la carence en azote et en phosphate. Ces limitations en nutriments induisent une accumulation de TAG, exploitable comme biocarburant. Nous avons identifié de nouveaux composés induisant l'accumulation de TAG et étudié le rôle potentiel du monoxyde d’azote (NO•) dans la régulation du métabolisme lipidique. Nous avons montré qu’en fonction du site de production, le NO• était un signal émis lorsque les conditions de vie étaient critiques, déclenchant l'accumulation de TAG.Les VLC-PUFAs sont produits par des élongases et des désaturases localisées dans le RE. Nous avons identifié une nouvelle classe d’élongases d’acides gras saturés, agissant sur le 16:0, et appelées Δ0-ELO. Le knock out de Δ0-ELO1 de Nannochloropsis réduit le niveau du monogalactosyldiacylglycérol (MGDG), principal lipide des chloroplastes. Ce phénotype met en évidence le rôle de Δ0-ELO1 dans la «voie oméga» qui contrôle le trafic des VLC-PUFAs. Nous avons débuté une dissection de la «voie oméga» par des approches de génétique et des analyses du remodelage lipidique à basse température chez Nannochloropsis. Le diacylglycéryl hydroxyméthyltriméthyl-β-sérine (DGTS) apparaît comme le précurseur de base pour importer des VLC-PUFAs vers le chloroplaste, suivant une voie très régulée du DGTS au MGDG. De plus nous avons montré des fonctions possibles du MGDG et des VLC-PUFAs dans la photoprotection et la régulation de la fluidité membranaire latérale. / Phaeodactylum and Nannochloropsis are photosynthetic model species for glycerolipid metabolism, standing out by an enrichment of very-long-chain polyunsaturated fatty acids (VLC-PUFAs) and high contents of neutral lipids such as triacylglycerol (TAG). Lipid profiles are influenced by environmental factors. We characterized the lipid remodelling occurring in Phaeodactylum in response to nitrogen and phosphate starvation. Nutrient limitations induce neutral lipid accumulation, which may be exploited as biofuels. We identified new triggers of TAG accumulation and investigated a potential role of nitric oxide (NO•) as second messenger in the regulation of neutral lipid levels. We conclude that in dependence of the production site, NO• serves as a signalling molecule for critical life conditions and thereby triggers TAG accumulation.VLC-PUFAs are produced by ER-located elongases and desaturases. We identified a novel class of elongases, called Δ0-ELOs, acting on saturated fatty acids, most importantly 16:0. Knock out of Δ0-ELO1 in Nannochloropsis resulted in reduced monogalactosyldiacylglycerol (MGDG) levels. MGDG is the major chloroplast lipid. This indicated a role of this initial elongase in fatty acid fate determination and thus in the elusive “omega pathway” for VLC-PUFA trafficking. We have started to investigate the “omega pathway” by reverse genetic approaches and analyses of low-temperature induced lipid remodelling in Nannochloropsis. Diacylglyceryl hydroxymethyltrimethyl-β-serine (DGTS) appears most likely at the base for the chloroplast import of VLC-PUFA, following a dynamically regulated DGTS-to-MGDG pathway. Additionally, we gave insights into possible functions of MGDG and VLC-PUFA in photoprotection and regulation of membrane fluidity.

The transition of the 30S initiation complex (IC) to the translating 70S ribosome after 50S subunit joining provides an important checkpoint for mRNA selection during translation in bacteria. Here, we study the timing and control of reactions that occur during 70S IC formation by rapid kinetic techniques, using a toolbox of fluorescence-labeled translation components. We present a kinetic model based on global fitting of time courses obtained with eight different reporters at increasing concentrations of 50S subunits. IF1 and IF3 together affect the kinetics of subunit joining, but do not alter the elemental rates of subsequent steps of 70S IC maturation. After 50S subunit joining, IF2-dependent reactions take place independent of the presence of IF1 or IF3. GTP hydrolysis triggers the efficient dissociation of fMet-tRNAfMet from IF2 and promotes the dissociation of IF2 and IF1 from the 70S IC, but does not affect IF3. The presence of non-hydrolyzable GTP analogs shifts the equilibrium towards a stable 70S–mRNA–IF1–IF2–fMet-tRNAfMet complex. Our kinetic analysis reveals the molecular choreography of the late stages in translation initiation. / Boehringen Ingelheim Fonds and the G¨ottingen Graduate School for Neurosciences, Biophysics, and Molecular Biosciences (to A.G.); Max Planck Society and grants of the Deutsche Forschungsgemeinschaft (to M.V.R.); Peruvian Programa Nacional de Innovaci ´on para la Competitividad y Productividad [382-PNICP-PIBA-2014 (to P.M.)]. Funding for open access charge: Max Planck Society. / Revisión por pares

No description available.

Few weeks after birth, a switch in peptide elongation factor 1As from EF-1alpha/EF1A-1 to S1/EF1A-2 occurs in brain neurons, heart and skeletal muscles of mammalians. In order to elucidate the reason behind this switch, I studied the expression of both homologous proteins during muscle differentiation and apoptosis and, documented the relation between peptide elongation factors and caspase-3 activation. I found that during in vitro muscle differentiation of L6 myoblasts, a switch in peptide elongation factors 1A occurs as physiologically observed in skeletal muscles. While EF-1alpha/EF1A-1 is expressed in replicating myoblasts, S1/EF1A-2 is solely found in differentiated myotubes where it replaces EF-1alpha/EFIA-1 as the major elongation factor. Similarly, upon serum deprivation-induced apoptosis, a reversion in peptide elongation factors 1A is observed: EF-1alpha/EF1A-1 replaces S1/EF1A-2 and becomes the major form of elongation factor 1A present in dying myotubes. This switch correlates in myotubes with the activation of caspase-3 protein, a cysteine protease involved in apoptosis. When L6 myotubes constitutively express S1/EF1A-2 as caused by adenoviral gene transfer, they become resistant to serum deprivation-induced apoptosis. In contrast, when L6 myotubes are transfected with EF-1alpha/EF1A-1 gene, they die more rapidly from serum deprivation-induced apoptosis than control cells. Transfection using anti-sense EF-1alpha/EF1A-1 gene protects myotubes from apoptotic cell death. Thus, both elongation factor 1As exert opposing effect on muscle survival: while EF-1alpha/EF1A-1 accelerates apoptotic cell death, S1/EF1A-2 protects muscles against apoptosis. / I found that skeletal muscles are the only tissues where, despite the constitutive expression of caspase-3 mRNA, the protein can be absent. Furthermore, I found that while immediately after birth, caspase-3 protein is present in skeletal muscles, a few weeks afterwards, the protein cannot be detected by Western blotting. In skeletal muscle, this change correlates with the observed switch in peptide elongation factors from EF-1alpha/EF1A-1 to S1/EF1A-2 and suggests that caspase-3 is translationally regulated in skeletal muscles. The laboratory previously reported that while EF-1alpha/EF1A-1 protein reappears; S1/EF1A-2 protein becomes absent from regenerating muscles. However, once tissue regeneration is completed, the situation returns to normal as EF-1alpha/EF1A-1 disappears and S1/EF1A-2 reappears to become the only type 1A elongation factor expressed in muscle. / In conclusion, I found that the developmental switch observed in peptide elongation factors from EF-1alpha/EF1A-1 to S1/EF1A-2 partly serves to protect muscle cells from apoptosis. Thus, I am the first to identify a noncanonical function for S1/EF1A-2. (Abstract shortened by UMI.)