ABSTRACT Recent studies have shown that R. rhodochrous DAP 96253 has the ability to delay the ripening of many climacteric fruit, by potentially degrading volatile compounds released by plant cells during the ripening process. Rhodococcus rhodochrous DAP 96253 cells were cultured on YEMEA medium supplemented with inducers, (16mM cobalt and 125mM urea), that over-expressed nitrile hydratase (NHase) and amidase (AMDase) enzymes. Cells were cultured on propylene/ ethylene as sole carbon source to induce alkene monooxygenase (AMO) like activity. Induced R. rhodochrous DAP 96253 cells displayed an 83% increase in final total dry weight compared to cells previously cultured on non-induced medium. Induced R. rhodochrous DAP 96253 cells displayed a 53-85% increase in NHase activity after exposure to propylene/ethylene, and cells displayed a 24-53% increase in NHase activity after exposure to fruit. Non-induced R. rhodochrous DAP 96253 cells displayed a 1-5% increase in NHase activity after propylene/ethylene, and cells displayed an 18-38% increase in NHase activity after exposure to fruit. Propylene/ethylene induced nitrilase activity in non-induced R. rhodochrous DAP 96253cells. Experimental results suggest that R. rhodochrous DAP 96253 may use NHase, amidase, nitrilase, and AMO like activity to delay ripening of climacteric fruit. Rhodococcus rhodochrous 96253 cells cultured on propylene/ethylene and cofactors (16mM cobalt and 125mM urea) displayed improved ability to delay ripening of fruit.

published_or_final_version / Zoology / Master / Master of Philosophy

Author's manuscript for published article. See Additional Links field for link to published version. / Ethylene production by different needle age classes was characterized using a mercuric perchlorate traps in natural populations of two ponderosa pine varieties (Pinus ponderosa var. arizonica [Engelm] Shaw and var. ponderosa Dougl. ex Laws.) and Jeffery pine (Pinus leffrevi Grev. and Balf.). All ozone -exposed populations contained individuals which were symptomatic and asymptomatic with respect to visible ozone injury. Ethylene production of different needle age classes was also characterized in Pinus ponderosa var. ponderosa seedlings grown in open top ozone fumigation chambers. Older age class needles produce more ethylene than younger age class needles. Needles of both P. ponderosa var. ponderosa and P. jeffreyi exhibiting ozone injury in the field produced significantly (p >0.05) higher levels of ethylene than asymptomatic conspecifics. Seedlings exposed to highest treatment level of ozone in the fumigation study produced the highest levels of ethylene followed by fumigation with medium and low ozone concentrations and carbon filtered air. These data indicate that measurement of ethylene in conifer needles as a measure of stress needs to be calibrated for needle age class. It also suggests that the sensitivity of a tree to ozone injury may be regulated by the inherent ability of the individual to produce ethylene.

Poly(ethylene oxide) (PEO) is known for facilitating the electrospinning of biopolymer solutions, that are otherwise not electrospinnable. The objective of this study was to investigate the mechanism by which PEO enables the formation of whey protein isolate (WPI) electrospun fibers under different pH conditions. This investigation revealed that the addition of PEO increased the viscosity of WPI/PEO (10% w/w WPI; 0.4% w/w PEO) solutions. Difference in pH levels of the polymer solutions affected electrospinnability and fiber morphology. Acidic solutions resulted in smooth fibers (700 ± 105 nm) while neutral solutions produced spheres (2.0 ± 1.0 um) linked with ultrafine fibers (138 ± 32 nm). In comparison, alkaline solutions produced fibers (191 ± 38 nm) that were embedded with spindle-like beads (1.0 ± 0.5 um). Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) and matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) analyses revealed that the native globular configuration of WPI was not altered under neutral conditions. By contrast, the electrophoresis and spectrometry data indicated that WPI was denatured and hydrolyzed under acidic conditions, which facilitated the formation of smooth fibers. C13 nuclear magnetic resonance (NMR) and attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopies showed that the increase random coil and a-helix secondary structures in WPI contributed to the formation of bead-less electrospun fibers. Also, C13 NMR analysis showed no evidence of chemical interaction between WPI and PEO. Scanning transmission electron microscopy coupled with energy dispersive X-rays (STEM-EDAX) revealed that WPI was uniformly distributed within WPI/PEO electrospun fibers. Observations by scanning electron microscopy (SEM) and field emission scanning electron microscopy (FESEM) indicated that fibers possessed a solid core. All these findings suggested that PEO enables the formation of WPI/PEO electrospun fibers by entanglement/entrapment/deposition. Preliminary studies were conducted on hydroxypropyl methyl cellulose (HPMC). In the absence of PEO, HPMC enabled the formation of WPI electrospun fibers under acidic conditions (124 ± 46 nm). FTIR analyses indicated that there was no interaction between HPMC and WPI, suggesting that HPMC aided in the electrospinning of WPI fibers, also by entanglement/entrapment/deposition. Hence, HPMC and PEO aid in the electrospinning of WPI fibers by entanglement/entrapment/deposition, which can be manipulated by alterations in the protein configuration and solution properties. / Natural Sciences and Engineering Research Council (NSERC) of Canada and the Dairy Farmers of Ontario (DFO)

No description available.

1,2-Dichloroethane (1,2-DCA), a highly toxic and recalcitrant compound, is produced anthropogenically in larger quantities than any other chlorinated compound. It is regarded as a mutagen and carcinogen, thus making it a priority target molecule for biological degradation. In addition, the intermediates of 1,2-DCA degradation are highly reactive and toxic, due to the electrophilic nature of the carbonyl groups in these compounds. Aerobic biodegradation of 1,2-DCA, resulting in complete mineralization, has previously been reported in Xanthobacter autotrophicus GJ10 and some Ancylobacter aquaticus strains. X. autotrophicus GJ10 has been found to possess chloroacetaldehyde (CAA) dehydrogenase and haloacid (HA) dehalogenase enzymes, both of which play a crucial role in 1,2-DCA degradation. Five strains of Ancylobacter aquaticus capable of utilizing 1,2-DCA as a sole carbon and energy source have recently been isolated in our laboratory. The degradation potential and specific dehalogenase activities of these bacterial isolates against 1,2-DCA and other halogenated compounds as a carbon source were investigated and compared to previously characterized organisms, viz., X. autotrophicus GJ10 and Ancylobacter aquaticus strains AD25 and AD27. Furthermore, this study proposed to detect the presence of the CAA dehydrogenase (aldB) and HA dehalogenase (dhlB) encoding genes in these isolates. Growth of all strains in the presence of 1,2-DCA as a carbon source was monitored over an 84 h period, in minimal medium supplemented with either vitamins or yeast extract. Dehalogenase activities were measured colorimetrically by monitoring halide release by crude cell extracts of the isolates. In order to detect the presence of dhlB and aldB genes, genomic DNA of the isolates was digested with individual restriction endonucleases, viz., EcoRI, PstI, HindIII and BamHI, and then subjected to Southern hybridization experiments. All isolates demonstrated significant growth rates in both vitamin and yeast extract supplemented media, with the former having a greater overall growth effect. Ancylobacter aquaticus DH5 demonstrated the highest growth rate of 0.147.h-1 in the presence of vitamins while Ancylobacter aquaticus DH12 displayed the highest growth rate of 0.118.h-1 with yeast extract. Optimum haloalkane dehalogenase activities of these bacterial isolates were confirmed at pH 8, similar to the activity in X. autotrophicus GJ10, while haloaciddehalogenase activity had a broader pH range. Hydrolytic dehalogenase activity of the bacterial isolates using a range of halogenated aliphatic compounds was also determined. Results demonstrated a wide substrate range with activity being observed on 1,3- dibromopropane, 1,2-dibromoethane and 1,3-dichoropropene, for all isolates. Southern Hybridization experiments confirmed the presence of both aldB and dhlB genes in X. autotrophicus GJ10. The dhlB probe produced a positive signal for an EcoRI fragment in Ancylobacter aquaticus DH12 while the aldB probe hybridized and produced a single positive signal on similar sized PstI fragments for all organisms except A. aquaticus AD25 which produced two positive signals. The results in this study demonstrate the potential application of the newly isolated strains of Ancylobacter aquaticus. in future bioremediation strategies. The detection of the genes involved in 1,2-DCA degradation further support the use of these isolates and/or their enzymes for the degradation of 1,2- DCA as well as other halogenated compounds. Future work need to determine sequence similarity of these genes detected in A. aquaticus strains to the genes in Xanthobacter autotrophicus GJ10 and other previously reported genes. It may also be important to investigate the activity of the enzymes under various environmental conditions and to determine enzyme structure and the catalytic sites, so as to gain knowledge of their degradation potential on site. Characterization of enzymes at both the molecular and protein levels may be necessary and beneficial for implementation in strategies involving bioremediation for the biological degradation of a wide range of halogenated aliphatic hydrocarbons. / Thesis (M.Sc.)-University of KwaZulu-Natal, Westville, 2011.

Reflection-absorption infrared spectroscopy (RAIRS) has been used to probe the interaction of cyclohexane, partially deuterated cyclohexane C₆HD₁₁, toluene and ethylene with the Ni{111} surface. The coadsorption of cyclohexane and oxygen on the Ni{111} surface has also been studied in some detail; the effects of differing coverages of both pre- and post- dosed oxygen on cyclohexane adsorption has been investigated. As these experiments were the first to be completed using a new UHV system, an important element of this PhD project involved commissioning the UHV system, including the LEED and Auger apparatus, and setting up the RAIRS optical system. On the clean Ni{111} surface at 110 K adsorbed cyclohexane exhibits a site symmetry of C_3v which persists through to the multilayer regime. Adsorbed molecules in the first layer exhibit a broadened and downshifted vCh stretching vibrational band, thought to arise from CH...M interactions and observed on many metal single crystal surfaces. The effect of coadsorbed oxygen on cyclohexane adsorption is strongly coverage dependent. At lower oxygen coverages, θ_O ≤ 0.25, a further downshifting of the softened vCH stretching vibration is observed, indicating the importance of charge transfer from the filled CHσ orbital to the metal in weakening the C-H bond. Adsorption of cyclohexane on the Ni{111}-(√3x√3)R30°-O surface, θ_O = 0.33, leads to total suppression of any C-H...M interaction, attributed to blocking of the bare metal sites by the adsorbed atoms. Post-dosing of oxygen on the cyclohexane adlayer leads to compression of existing islands of cyclohexane, involving molecular transfer from the first layer to the second. This is attributed to the difference in heats of adsorption of the two adsorbates.

Over the past decade, advances in ethylene oligomerization have witnessed explosive growth of interest from both commercial and academic standpoint, with chromium metal invariably being the metal of preference. A common feature in this literature was the extended long debate regarding the mechanism, metal oxidation states responsible for selectivity and the role of the ligand. This thesis work embarked on the isolation and characterization of new active intermediates called “single component catalysts” (or self activating) to address two important questions: (1) how the catalyst precursors re-arrange upon activation and (2) the real oxidation state of the activated species. Four different ligands systems have been examined for this purpose. The first part is a study on the NPIIIN ligand which can be described as a dynamic and non-spectator ligand. Upon aluminum alkyl activation, a series of single component chromium catalysts for selective ethylene oligomerization and polymerization have been isolated, fully characterized and tested. New selective single component chromium(I) catalysts have also been isolated and tested positively for ethylene trimerization. The second part includes a new series of chromium complexes based on the NPVN ligand. This ligands enabled to obtain the first polymer-free extremely active catalytic system. In both NPN ligand systems, a new activation pathway was discovered by using vinyl Grignard reagent [(CH2=CH)MgCl] as activator and/or reducing agent. The third part explores new modified pyrrole-chromium complexes which were found to be highly active and selective ethylene trimerization catalysts. This part was a continuation of previous work from our lab to complete the mechanistic picture of this highly successful pyrrole-chromium catalyst independently commercialized by Phillips-Chevron and Mitsubishi. Interestingly upon aluminum alkyl treatment, the first example of a Schrock-type chromium ethylidene complex has been isolated and characterized and found to be a potent catalyst for selective ethylene trimerization. Finally, the other ligands introduced in this thesis are new systems called pyridine-SNS and Si-SNS that introduce some modification to the known commercial SNS catalyst (Sasol technology). The introduction of a pyridine ring or a silyl unit in the ligand scaffold has allowed to understand the mechanism of action of this remarkable system.

Thesis (Ph. D.)--University of Hong Kong, 2008. / Includes bibliographical references (leaf 185-187) Also available in print.

Thesis (Ph. D.)--University of Michigan, 1931. / "By C.S. Schoepfle and J.D. Ryan." Reprinted from the Journal of the American Chemical Society, v. 52, 1930 and v. 54, 1932.