PhD (Zoology) / Department of Zoology / Invertebrate diversity is often neglected in conservation planning initiatives. There are also very few large-scale diversity studies in Africa, with most studies being restricted to single properties and spatial extents that are on average not much larger than 30 km2. Here, we provide a comparative regional assessment, two orders of magnitude larger than usual (30 000 km2), of epigeal spider, beetle and millipede diversity in the Vhembe Biosphere Reserve – the largest biosphere reserve in South Africa, and one of the largest in Africa. Firstly we aim to provide an evaluation of the ability of a range of broad and fine scale predictors to explain the variation in the diversity of these taxa. Secondly, we measured cross-taxon congruence between our selected invertebrate taxa and woody vegetation, and within-taxon surrogate efficiency. Thirdly we evaluated performance of existing and proposed zonations in representing regional invertebrate species diversity. Finally, to aid in the development of species conservation profiles for lesser known taxa, annotated check lists are provided for two neglected but dominant epigeal beetle families, Tenebrionidae and Carabidae. Vegetation units explained the largest and most significant component of beetle and spider diversity (richness and complementarity of alpha and beta diversity). Elevation and mean annual temperature played a lesser but still significant role. Overall, woody vegetation was a poor surrogate, especially for millipedes which have several localized endemics. The use of higher taxa (genus and tribe in particular) shows the greatest potential for conservation planning. The current zonation of the Vhembe Biosphere Reserve performed significantly better than expected in representing invertebrate diversity across the region. The reality though is that conservation decision-making is largely informed by knowledge on the distribution of rare, localized or endangered species, for which detailed species inventories are 10 required. Though a coarse filter approach is recommended, the augmentation of species level data provides an extra filter, and contributes to our knowledge of what taxa are in urgent need of protection. Targeting rare and endangered species in transition zones and developing conservation assessments and plans for these in relatively small areas would compliment existing conservation initiatives in the VBR. Annotated check lists ofTenebrionidae of the Vhembe Biosphere suggest that the family is particularly speciose, the assemblage being comprised of an east African and a Kalahari element which contributes significantly to local endemicity, and yielded three new species, one of which is described in the revision to the genus Anaxius, a group largely restricted to the mountainous areas of Limpopo Province. Carabidae were also found to be speciose, with the assemblage comprised of a large proportion of stenotypic species. There is support for the use of vegetation types in conservation plans but these should be augmented with species level conservation initiatives that target particularly transition and buffer zones. / NRF

MSc (Zoology) / Department of Zoology / See the attached abstract below

MPM / Oliver Tambo Institute of Governance and Policy Studies

MESHWR / Department of Hydrology and Water Resources / See the attached abstract below

MSc (Botany) / Department of Botany / The use of disturbance in the management of Savanna is a common rangeland practice in South Africa. A two-season trial was established in June 2016 and December 2016 to evaluate the effects of disturbance of different intensities on wetland belts in the Nylsvley Nature Reserve. The disturbances were in three different belts of different grass types at different intensities. The experimental treatments consisted of two different intensities, namely; high (H) and low (L). The Cyperus amabilis belt was regarded as site 1, the Sporobolus africanus as site 2, and the Themeda triandra as site 3. Seventeen kites were contracted in each belt, two times 1 m × 1 m at high and low intensity, followed by two times 2 m × 2 m one at high intensity. The results showed that disturbance affects the topsoil by removing the soil which is rich in nutrients producing pioneer species for the first few months and then original species were seen inhibiting again. / NRF

PhD (Zoology) / Department of Zoology / An ever growing human population and accelerating land use change is associated with the loss of species and their ecosystem services. Agricultural intensification has led to a worldwide threat of extinction to about one quarter of all bat species, despite the valuable ecosystem service of pest control provided by bats. The decline in bat populations is mainly attributed to the loss or fragmentation of habitats, roost sites and feeding opportunities related to agricultural intensification and land use change. Therefore, proactive management of bat communities in agricultural landscapes is essential. South Africa is the world’s largest producer of macadamias and the industry continues to grow. This study gains insight into the habitat use and foraging behaviour of insectivorous bat species on a temporal and spatial scale, in and around macadamia orchards in order to advise management strategies on how to increase bat activity and, possibly, pest control. It also focuses on the preferences of artificial roost sites used by insectivorous bats in macadamia orchards. The diet of insectivorous bat species is especially difficult to study and the least invasive tool to gain information is the study of bat faecal pellets. In order to provide evidence for the consumption of pest insect species by bats and thus incentive to farmers for a more integrated pest management approach (IPM), this study explored molecular approach to insectivorous bat diet analyses using fragment analysis of bat faecal pellets with fluorescent-labelled species-specific primers (designed for the CO I gene). This study was conducted in the subtropical fruit growing area of Levubu, Limpopo province, South Africa between the towns Thohoyandou (22°59'03.7 S, 30°27'12.8 E) and Makhado/Louis Trichardt (23°03'03.6 S, 29°55'12.7 E). Levubu also accounts for the second highest production of macadamia in South Africa. An introduction to the order Chiroptera and into the relevance of insectivorous bat species to agriculture as well as the importance of a more integrated pest management approach (IPM) focusing on bats is provided in Chapter One. Bats were acoustically monitored and light traps were used to catch arthropods during one annual cycle. I sampled five macadamia orchards once a month from September 2015 to August 2016 and used GIS and R to analyse both the general bat activity and foraging bat activity of the two main foraging guilds (open-air/clutter edge guild) in different land use types as well as total bat activity with respect to arthropod abundances. As reported in Chapter Two, results show that the overall clutter edge guild activity (number of passes) decreased with macadamia and orchard (all other fruit) cover in the macadamia high season (December to end of May) and increased with bush cover and distance to settlements (potential roosts) in the macadamia low season (June to end of November). Open-air guild activity increased with fallow cover (uncultivated grassland with scattered trees and shrubs) in the high season. Foraging activity (feeding buzzes) of the clutter edge guild increased with bush cover over the whole year. Total activity (both guilds) increased with abundance of true bugs (Hemiptera), including the main macadamia pests, and bush cover. Macadamia cover has a negative effect on the activity of the clutter edge guild in the high season, with low activity in the orchard center (high cover), and activity increasing in a linear way with decreasing orchard cover at the orchard edge (low cover). These results suggest that the clutter edge guild prefers foraging close to the edges of the orchards rather than in the center, while the open-air guild prefers semi-natural habitats (fallow). When numbers of pest arthropods drop in the macadamia orchards, the natural land use type, bush, becomes a more important foraging habitat and thereby increased the activity of the clutter edge guild. From June 2016 to July 2017, I scanned 31 bat houses, mounted on poles on six macadamia orchards, for bats or any other occupants such as wasps, birds and bees. Twenty-one multichambered bat houses of three slightly different chamber designs were erected on poles, in sets of three. Additionally, five bat houses of the type ‘Rocket box’, four bat houses in sets of two (black and white) and one colony bat house were erected. Bats were counted and visually identified to family or species level. From December 2016 to end of March 2017, three IButtons were installed to record temperature variation between one set of three bat houses. As reported in Chapter Three, results show that the central bat house in the set of three and the black bat house in the set of two had a significantly positive effect on bat house occupancy. There was a significant difference in the mean temperature between the houses in the set of three, with a significant difference in temperature of 0.46°C between the central and the first bat house. The three bat houses erected in sets varied slightly in their chamber design, with the central bathouse having the most chambers (six), while the bat houses to either side had less chambers (four), set at an angle or straight. This and the insulation to either side by the other bat houses is assumingly what caused the central bat house to be on average warmer. The Yellow-bellied house bat (Scotophilus dinganii) was by far the most recorded and the only species observed to co-habitat a bat house with another animal species, in particular honeybees. The study might confirm assumptions in that the microclimate of bat houses, respectively their insulation, sun exposure and color appear to be important factors influencing bat house occupancy. The two preferred bat houses in our study were the black, in the set of black and white, as well as the central, and on average warmest bat house, in the set of three. I collected bat faecal pellets with two different methods between July 2015 and April 2017 to determine the prevalence of pest insects in faecal pellets. Eighteen of the bat houses (in sets of three) on three different farms and two Egyptian slit-faced bat (Nycteris thebaica) roosts were fitted with trays in order to collect pellets from those occupied by bats. I noted occupancy of bat houses to species or family level to keep disturbance minimal. Additionally, I collected pellets from individuals captured by means of mist nets and harp traps. Four of the main pest-insects; the two-spotted stinkbug (Pentatomidae: Bathycoelia distincta), the green vegetable bug (Pentatomidae: Nezara viridula), the macadamia nut borer (Tortricidae: Thaumatotibia batrachopa) and the litchi moth (Tortricidae: Cryptophlebia peltastica), were collected from pheromone traps or after scouting for primer development and optimisation. After extracting DNA from the bat faecal samples the target regions were amplified in a multiplex PCR and fluorescently labelled PCR amplicons were analysed and interpreted. In order to verify multiplex analyses results, all samples were amplified with all four sets of primers in plates and those that produced amplicons were purified and sequenced. As reported in Chapter Four, results show that fragment analyses yielded a total of 63 out of 103 samples tested positive for pest insect species (61%) with a total of 92 positive fragments. Primer specificity could be confirmed to 100% for the sequences obtained for Bathycoelia distincta (26/26) and Nezara viridula (12/12) primers but not for all sequences obtained fot Cryptophlebia peltastica (18/30) and Thaumatotibia batrachopa (1/14) primers. One sample showed no positive fragments but contained a positive sequence for N. viridula. Three samples tested positive for one pest-species fragment but contained a positive sequence for a second pest-species (B. distincta, T. batrachopa and C. peltastica). Adding four positive fragments and one additional positive sequence to the data. This means that sequences of pest insect species were obtained from 54 out of the 103 samples (55.6%) with a total of 73 pest insect sequences. For the high season (December to end of May) a total of 37 positive fragments for the four pest insect species and 24 negative samples were yielded and for the a low season (June to end of November) a total of 36 positive fragments and 15 negative samples. Looking at the pest consumption of the different bat species or families, our results show that all of them foraged on pest insect species. Whereas, all species and families except Myotis bocagii and Rhinolophus simulator (for which N<2) foraged on both the Lepidopteran and Hemipteran pest species. Therefore, all families of bats of which faecal pellets were analysed for this study (Molossidae, Nycteridae, Rhinolophidae and Vespertilionidae) foraged on one or more of the four pest insect species. In summary, Chapter Five concludes that natural and semi-natural vegetation promote bat activity in macadamia orchards, and potentially bats' provision of the ecosystem service of pest control. In times of accelerating land use change, remnants of natural vegetation are important refuges and need to be maintained or restored to conserve bat species and promote their ecosystem services. The study also shows that bat activity might be improved by adding roosting opportunities to orchards. Warm and well-insulated bat houses mounted freestanding on poles and in sets appeared to work best in northern South Africa. Further research on co-habitation of bat houses and displacement behaviour as well as the potential importance of altitude and distance to water is needed. All of the species or families of bats from which faecal pellets were collected have been confirmed to forage on at least one of the four pest insects and the bat species have shown to be much more generalist and presumably opportunistic feeders than previously assumed. Thus, this study provides incentive and advice to farmers for a more integrated pest management approach (IPM). / NRF