No description available.

In quantum chemistry, scientists aim to solve the time-independent Schrödinger equation by employing a variety of approximation techniques whose accuracy are typically inversely proportional to their computational cost. This problem is amplified when it comes to chiral molecules, whose stereochemical assignments and associated chiroptical properties can be incredibly sensitive to small changes in their three-dimensional structure, requiring highly accurate theoretical methods. On the other hand, due to the polynomial scaling with system size, it is sometimes impractical to apply such methods to chemical compounds of broad scientific interest, especially when a multitude of low-energy conformations have to be accounted for as well. As a result, the assignment of absolute configurations to chiral compounds remains a tedious task. However, the characterization of these compounds is something that many different scientists are significantly invested in. The ultimate goal, then, is twofold: to gain useful insight by utilizing the electronic structure methods at your disposal while simultaneously developing new approximation techniques that can be used to push the boundaries on what is currently capable in computational chemistry. Therefore, we start by applying widely accepted density functional theory methods to predict optical rotations and electronic circular dichroism for naturally occurring antiplasmodial and anticancer drug candidates. We find that by comparing the computational results directly with those obtained through experimental measurement, we can provide reliable absolute config- uraitonal assignments to a variety of chiral compounds with numerous stereogenic centers. We also present the first ever prediction of vibrational circular dichroism with second-order Møller-Plesset perturbation theory. This extension opens the door to systematically improvable correlated wave function methods that can be employed when density functional theory fails or when higher accuracy results are required. / Doctor of Philosophy / Theoretical chemistry aims to draw a line from a molecule's three-dimensional structure to a set of physical observables, allowing for the efficient prediction of such properties. One family of chemical compounds for which this task becomes increasingly difficult is known as chiral molecules. A chiral compound is defined as one that has a non-superimposable mirror image. The concept of chirality is most tangibly seen with a pair of human hands, which demonstrate this same mirror-like behavior. In the same way that a person has left and right hands, a three-dimensonal handedness can be used to characterize many compounds that are essential to life including enzymes, sugars, and proteins. Although procedures have been developed to consistently isolate pure samples of such compounds, the correct identification of each hand poses a much larger task and costs the global pharmaceutical industry tens to hundreds of millions of dollars every year. As such, gaining insight about these incredibly valuable compounds and their associated properties is a never ending goal for many scientists. One such way to gain insight is through the direct comparison of experimental and calculated properties, namely chiroptical properties. These unique properties define how chiral compounds interact with light. While experimental scientists are limited in the degree to which they can probe a molecule's structure, theoretical chemists have the advantage of knowing the exact three-dimensional structure for the compound they are studying. On the other hand, theoretical chemists rely on comparison to experimental results to develop new methods or apply the available techniques to predict molecular properties. This work begins by attempting to match calculated properties to experimentally measured ones in order to confirm the detailed molecular structure of natural product drug candidates. Through multiple such computational studies, it is shown that the current methods are sometimes limited in the knowledge that they can provide. As a result, it is absolutely necessary to continue to improve on the existing methods. We go on to provide a first-of-its-kind implementation that allows for theoretical chemists to compare their results to experiment in a way that was not previously possible.

Silicon nanowires (SiNWs) and the copper chalcogenides, namely copper sulfide (Cu2S) and selenide Cu2Se, have diverse applications in renewable energy technology. For example, SiNWs which have direct band gaps unlike bulk Si, have the potential to radically reduce the cost of Si based photovoltaic cells. However, they degrade quickly under ambient conditions. Various surface passivations have therefore been investigated for enhancing their stability but it is not yet well understood how they affect the electronic structure of SiNWs at a fundamental level. Here, we will explore, from first-principles simulation, how fluorine, methyl and hydrogen surface passivations alter the electronic structures of [111] and [110] SiNWs via strain and quantum confinement. We also show how electronic charge states in [111] and [110] SiNWs can be effectively modelled by simple quantum wells. In addition, we address the issue of why [111] SiNWs are less influenced by their surface passivation than [110] SiNWs. Like SiNWs, Cu2S and Cu2Se also make excellent photovoltaic cells. However, they are most well known for their exceptional thermoelectric performance. This is by virtue of their even more unique solid-liquid hybrid nature which combines the low thermal conductivity and good electrical characteristics required for a high thermoelectric efficiency. We use first-principles molecular dynamics simulations to show that Cu diffusion rates in Cu2S and Cu2Se can be as high as 10-5cm2s-1. We also relate their phonon power spectra to their low thermal conductivities. Furthermore, we evaluate the thermoelectric properties of Cu2S and Cu2Se using a combination of Boltzmann transport theory and first-principles electronic structure calculations. Our results show that both Cu2S and Cu2Se are capable of maintaining high Seebeck coefficients in excess of 200μVK-1 for hole concentrations as high as 3x1020cm-3.

Ce travail est une contribution ab initio à la caractérisation d'halogénures diatomiques de métaux de transition. Nous avons choisi de caractériser la structure électronique des chlorures de métaux de transition du groupe Vb (NbCl et TaCl) et du fluorure de nickel car une série de spectres les concernant ont été enregistrés mais aucune donnée théorique fiable n'était disponible dans la littérature. Pour étudier ces molécules, nous avons appliqué une procédure de calcul à deux étapes qui permet de tenir compte des effets de corrélation électronique et des effets relativistes. Dans la première étape, nous avons réalisé des calculs CASSCF/ICMRCI+Q de grande taille qui tiennent compte de l'énergie de corrélation et introduisent des effets relativistes scalaires. Dans la deuxième étape, le couplage spin-orbite est traité par la "state interacting method" implémentée dans le logiciel MOLPRO. Nous avons développé des stratégies de calcul basées sur ces méthodes de calcul et adaptées aux différentes molécules ciblées. Ainsi, pour les molécules NbCl et TaCl, nous avons utilisé des pseudopotentiels relativistes scalaires et spin-orbite, tandis que pour la molécule NiF, nous avons réalisé des calculs tous électrons. Nous avons d'abord testé la stratégie de calcul sur les cations Nb+ et Ta+. Ensuite, nous avons calculé pour la première fois les structures électroniques relativiste scalaire et spin-orbite des molécules NbCl (de 0 à 17000 cm-1) et TaCl (de 0 à 23000 cm-1). A l'aide de ces données théoriques, nous avons interprété les spectres expérimentaux en collaboration avec Bernath et al. Nous avons proposé plusieurs attributions de transitions électroniques en accord avec l'expérience mais nos résultats théoriques ne nous ont pas permis de les attribuer toutes. Néanmoins, nous avons mis en évidence une série d'autres transitions électroniques probables qui pourraient, à l'avenir, servir à l'interprétation de nouveaux spectres mieux résolus. Outre son intérêt expérimental, cette étude a permis de comparer les structures électroniques des molécules isovalencielles VCl, NbCl et TaCl, mettant en évidence des différences importantes. L'élaboration d'une nouvelle stratégie de calcul pour décrire les systèmes contenant l'atome de nickel représentait un véritable défi en raison de la complexité des effets de corrélation électronique. Notre stratégie de calcul a consisté à introduire ces effets en veillant à réduire au maximum la taille des calculs qui devenait considérable. Nous l'avons testée sur l'atome Ni et appliquée ensuite au calcul des structures électroniques relativiste scalaire et spin-orbite de la molécule NiF entre 0 à 2500 cm-1. Nous avons obtenus des résultats qui corroborent l'expérience.

No description available.

No description available.

No description available.

No description available.

Le sujet de ce mémoire est l’étude ab initio des nanotubes de carbone. Premièrement, une introduction du sujet est présentée. Elle porte sur l’historique, la structure géométrique et électronique et les applications possibles des nanotubes de carbone. En deuxième lieu, la stabilité énergétique des nanotubes de carbones double parois ainsi que leur structure électronique sont étudiées. On trouve entre autres que le changement d’hybridation provoque une chute de l’énergie du dernier niveau occupé pour les petits nanotubes. Troisièmement, nous présenterons une étude sur la dépendance en diamètre et en métallicité du greffage d’unité bromophényle sur la surface des nanotubes. La principale conclusion est qu’il est plus facile de fonctionnaliser les nanotubes de petit diamètre puisque ceux-ci ont déjà une partie d’hybridation sp3 dans leur structure électronique. Finalement, le dernier chapitre aborde la combustion des nanotubes par le dioxyde de carbone. On constate que cette combustion ne peut pas débuter sur une surface intacte, ni par un pontage d’oxygène dû à la grande quantité d’énergie requise. La réaction privilégiée est alors la combustion par les extrémités du nanotube. Nous proposons une dynamique de réaction qui contient une sélectivité en diamètre. / The subject of this master’s thesis is the ab initio study of carbon nanotubes. First, an introduction to the subject is presented. It covers the history, the geometric and electronic structure and potential applications of carbon nanotubes. Second, the energy stability of double-walled carbon nanotubes and their electronic structure are studied. It is found that the change of hybridization causes a lowering in the energy of the highest occupied molecular orbital’s level for small nanotubes. Thirdly, a study of the diameter and metallicity dependence for the bromophenyl bonding energy on the carbon nanotubes is presented. The main conclusion is that it is easier to functionalize the nanotubes of small diameter since they already have some sp3 hybridization in their electronic structure. Finally, the last chapter discusses the burning of carbon nanotubes with carbon dioxide. It is found that combustion can not begin on a pristine surface or by a oxygen bridge due to the large amount of energy required. The favored reaction is then burning the ends of nanotubes. We suggest a path of reaction for which a diameter selectivity is apparent.

In this licentiate thesis, organic molecules, namely Cobalt Phthalocyanine (CoPc) and Biphenylene, have been studied by means of synchrotron radiation-based spectroscopic methods (Photoemission Spectroscopy (PES) and X-ray Absorption Spectroscopy (XAS) in combination with Density Functional Theory (DFT) calculations. Paper I is a combined experimental and theoretical investigation of electronic structure of CoPc. addressing the atomic character of the Highest Occupied Molecular Orbital (HOMO) and the electronic configuration of the molecular ground state. Both these aspects are still under discussion since different experimental and theoretical studies have given controversial results. Previous works have indicated the CoPc ground state to either be described by the 2A1g or 2Eg, or by a mix of the two electronic configurations. Regrading the debated the atomic character of the HOMO of CoPc, it has been suggested to be either metal 3d-like and localized on the central Co atom or originating in the organic ligand of the molecule. In this thesis the valence photoemission results for CoPc in gas phase and as adsorbed films on Au(111) together with the DFT simulations, consistently indicate that the HOMO is derived only by the organic ligand, with mainly contribution from the carbon atoms with no metal character. Moreover, the good agreement between the experimental and theoretical results, confirms that the ground state of CoPc is correctly described by the 2A1g configuration. In Paper II, PES and XAS have been used to investigate the occupied and empty density of states of biphenylene films of different thicknesses, deposited onto a Cu(111) crystal. The results have been compared to previous gas phase spectra and single molecule Density Functional Theory (DFT) calculations to get insights into the possible modification of the molecular electronic structure in the film induced by the adsorption on a surface. Furthermore, XAS measurements allowed the characterizion of the variation of the molecular arrangement with the film thickness and helped to clarify the substrate-molecule interaction.