Green macroalgae represent an attractive source of renewable carbon. Conversion of algal biomass to useful products requires depolymerization of the cell wall polysaccharides cellulose and ulvan. Cellulose saccharification has been widely studied and involves synergistic action of endoglucanases, exoglucanases, and β-glucosidases. The enzymatic depolymerization of ulvan has not received the same attention and additional studies are required in order to fully understand the mechanisms involved in its biodegradation. Synthetic biology offers the possibility of importing modules such as biomass-degrading systems and biofuel producing pathways from different organisms into a genetically tractable host such as Escherichia coli. In this study it was shown that E. coli expressing the glycosidase CHU2268 of Cytophaga hutchinsonii grows well on cello-oligosaccharides such as cellohexaose, and co-expression with the endoglucanase CenA of Cellulomonas fimi allows growth on untreated crystalline cellulose. Moreover, a model for ulvan utilization was built for the first time based on a polysaccharide utilization locus from the alga-associated flavobacterium Formosa agariphila. It was also shown that F. agariphila, is able to grow using biomass from the green macroalga Ulva lactuca as its sole carbon source, and enzymes with ulvanase activity are induced by the presence of this alga in the culture medium. Enzymes for ulvan depolymerization from F. agariphila, including an ulvan lyase, xylanases and rhamnosidases, were cloned using the PaperClip DNA assembly method and expressed in active form in E. coli. Furthermore, a secretion system based on the use of the Antigen 43 was successfully used to secrete an active ulvan lyase using E. coli and ribosome binding sites of different strengths were studied and used to optimize the system. These results represent a first step for the design of a microorganism capable of utilizing green macroalgal biomass for the production of biofuels and other valuable bio-products.

Parmi les bio-polymères issus des ressources renouvelables, les polysaccharides fournissent une alternative intéressante aux polymères de synthèse. Dans ce contexte, l’objectif de ce travail de thèse est basé sur la conception des copolymères amphiphiles pour la préparation de nouveaux biomatériaux. Ainsi, l’hydroxypropylméthylcellulose (HPMC) a été étudiée en raison de ses propriétés remarquables, dont la biocompatibilité, la biodégradabilité, la rétention d'eau et la gélification thermoréversible. Ces propriétés sont utiles pour de nombreuses applications telles que le relargage de médicament, la préparation des membranes et la formation de biomatériaux. L'hydrolyse enzymatique avec des endo cellulases issues de Trichoderma reesei a été étudiée pour produire des fragments d'HPMC ayant une masse molaire (Mw) entre 6000 et 30000 g mol-1. Les paramètres de l’activité enzymatique ont été étudiés en fonction de : la nature de substrat, le temps de réaction et la concentration de l'enzyme. Les polymères obtenus ont été comparés à ceux produits par hydrolyse acide. Il a été constaté que la structure des polymères issus d’un procédé d’hydrolyse, varie en termes de degré de substitution pour un même Mw. Cet effet donne lieu à différentes propriétés de gélification thermoréversible. Des copolymères amphiphiles tels que HPMC-b-poly (propylène glycol) et HPMC-b-PLA ont été préparés par amination réductrice et par couplage click thiol-ene, respectivement. Les propriétés d’agrégation ont été caractérisées par la diffusion de la lumière (DLS), le microscope électronique en transmission (TEM) et par la séparation de phase obtenue par la mesure du point de trouble. / Following the concept of bio-refinery, we propose to produce small fragments of biopolymers that can be used further as building blocks to prepare novel polymeric architectures. In the case of polysaccharides, enzymatic hydrolysis enables to form reducing end groups after each cleavage on the polymer chain. Reaction by reductive amination affords the possibility to introduce polysaccharides fragments in a large variety of materials going from amphiphilic copolymers to more sophisticated devices. Hydroxypropyl methylcellulose (HPMC) was used in this work because of its remarkable properties including biocompatibility, biodegradability, water retention and thermoreversible gelation beneficial for many applications such as drug delivery, film and biomaterial formation. Enzymatic hydrolysis using endo cellulases from Trichoderma reesei was investigated to produce a library of HPMC fragments with molecular weight (Mw) from 6000 to 30000 g mol-1. Mw control was carried out by varying the procedure conditions including the nature of starting HPMC, reaction time and enzyme concentration. The obtained polymers were compared to those produced by acidic hydrolysis.According to the preparation conditions, the structure of short chain polymers regarding substitution degrees varied for the same Mw giving rise to different clouding temperature and thermoreversible gelation properties. Amphiphilic block copolymers HPMC-b-poly(propylene glycol) and HPMC-b-PLA were prepared by reductive amination and by the thiol-ene click reaction, respectively. Self-assembly properties of these novel block copolymer were characterized by dynamic light scattering (DLS), transmission electron microscope (TEM), and clouding point temperature.