The Sundays Estuary is permanently open to the sea and has been described as channel-like along its entire length with a narrow intertidal area (mostly less than 5 - 6 m in width). The estuary experiences regular freshwater inflow with large supplies of nutrients, derived from the Orange River transfer scheme and agricultural return flow. In particular, nitrate concentrations are high as a result of fertilisers used in the Sundays River catchment area. The objectives of this study were to measure microalgal biomass and community composition and relate to flow, water quality and other environmental variables. Surveys in August 2006, March 2007, February, June and August 2008 showed that salinity less than 10 percent mostly occurred from 12.5 km from the mouth and this was also where the highest water column chlorophyll a (>20 μg l-1) was found. Different groups of microalgae formed phytoplankton blooms for the different sampling sessions, which were correlated with high chlorophyll a. These included blooms of green algae (August 2006), flagellates (March 2007), dinoflagellates (June 2008) and diatom species (February and August 2008). The dominant diatom (Cyclotella atomus) indicated nutrient-rich conditions. Green algae and diatoms were associated with low salinity water in the upper reaches of the estuary. Flagellates were dominant throughout the estuary particularly when nutrients were low, whereas the dinoflagellate bloom in June 2008 was correlated with high ammonium and pH. Maximum benthic chlorophyll a was found at 12.5 km from the mouth in February, June and August 2008 and was correlated with high sediment organic and moisture content. Benthic diatoms were associated with high temperature whereas some species in June 2008 were associated with high ammonium concentrations. The middle reaches of the estuary characterise a zone of deposition rather than suspension which would favour benthic diatom colonization. Phytoplankton cells settling out on the sediments may account for the high benthic chlorophyll a because maximum water column chlorophyll a was also found in the REI zone (where salinity is less than 10 percent and where high biological activity occurs) in the Sundays Estuary.

River inflow is one of the most important factors influencing the density and biomass of estuarine biotic communities. The aim of this study was to obtain an understanding of the ecosystem functioning of selected estuaries on the east coast of South Africa and to represent their dynamics through ecosystem models. The responses of water column nutrients, plankton density and biomass to inlet phase changes for 16 temporarily open/closed estuaries (TOCEs) in South Africa were first determined. This analysis demonstrated that inlet phase and the duration of mouth closure were the most important factors determining plankton density and biomass of the analysed TOCEs. Estimates of planktonic standing stocks for four of these estuaries revealed that stocks can be from 26 to 10 000 times higher during the closed compared to the open phase. Also, slightly higher variability of planktonic density and biomass was recorded during the closed phase of TOCEs. The second major thrust of this study was to analyse the variability and temporal stability of planktonic and macrobenthic invertebrate density and biomass in two KwaZulu-Natal estuaries over a dry/wet cycle. The results suggest that “stable” variability and species synchronization could be the mechanisms whereby the estuarine biota of these systems compensate for environmental changes and attain a degree of environmental homeostasis. The third major thrust involved an assessment of the spatio-temporal variations in the elemental composition and stoichiometry of suspended and sediment detritus, zooplankton and macrobenthic taxa from two estuaries over a dry/wet cycle. Significant seasonal variations in the elemental composition of detritus, zooplankton and macrobenthic species were found, with the variations in the elemental content of sediment and suspended detritus being related to the seasonal changes in river inflow, while the among-taxa variability was mainly explained by feeding mode. Finally, static seasonal carbon and nitrogen ecosystem network models were developed for the East Kleinemonde, Mlalazi and Mpenjati estuaries to investigate their nutrient dynamics and ecosystem functioning. The results indicated that the East Kleinemonde and Mpenjati estuaries were mainly dependent on primary producers during the dry season, especially the high standing stocks of phytoplankton and microphytobenthos. Similarly, the dependency on detritus was higher during the wet season due to the high riverine imports during this season. Consequently, higher detritivory was recorded in all three study systems during the wet season. Cycling of nitrogen was higher than of carbon on a seasonal basis, with higher recycling of nitrogen during the dry season implying a lower availability of this element due to reduced freshwater inflow and nutrient input during the low rainfall period. System indices indicated that the organization of these systems was higher during the dry season, while the overheads on imports and exports peaked during the wet season. The ecosystem models analysed here provide an initial insight into the overall carbon and nitrogen dynamics of estuaries on the east coast of South Africa. / M.Sc. University of KwaZulu-Natal, Durban 2013.

The spatial and temporal (seasonal and diel) patterns in the hyperbenthic community structure (>500 μm) was investigated in the warm temperate, permanently open Kariega Estuary situated along the south-eastern coastline of South Africa. Spatial and seasonal patterns in the hyperbenthic community structure were assessed monthly at six stations along the length of the estuary over a period of twelve months. Data were collected using a modified hyperbenthic sledge, comprising two super-imposed nets. Physico-chemical data indicate the presence of a constant reverse salinity gradient, with highest salinities measured in the upper reaches and lowest at the mouth of the estuary. Strong seasonal patterns in temperature, dissolved oxygen and total chlorophyll-a (chl-a) concentrations were evident. Total average hyperbenthic densities ranged between 0.04 and 166 ind.m-3 in the lower net and between 0.12 and 225 ind.m-3 in the upper net. Hyperbenthic biomass values ranged between 0.02 and 11.9 mg.dry weight.m-3 in the lower net and between 0.02 and 17.4 mg.dry weight.m-3 in the upper net. A spatial and temporal pattern in total densities was detected with an increase in abundance over the period of September to October 2008 particularly in the middle reaches (Stations 3 and 4). Both the lower and upper nets were numerically dominated by decapods (mainly brachyuran crab zoeae) with the exception of June and July 2008 when mysids (mainly Mesopodopsis wooldridgei) dominated, making up 72.4 ± 58.14% of the total abundance in the lower net. A redundancy analysis (RDA) indicated that 99.2% of the variance in the hyperbenthic community structure could be explained by the first two canonical axes. Axis one, which accounted for 96.8% of the total variation detected in the ordination plot was highly correlated with sedimentary organic content and to a lesser extent the chl-a concentration within the Kariega Estuary. The correlations with the second canonical axis (2.4%) were less obvious, however, salinity and seston concentration were weakly correlated with this axis. Diel variability in the hyperbenthic community structure was assessed during March 2009. Samples were collected during the day and night (n = 6 for each period) using sampling gear described above. Total average hyperbenthic densities during the day (497.9 ± 254.1 ind.m-3) were significantly higher than night-time estimates (129.9 ± 38.5 ind.m-3; p<0.05). There were no significant differences in the average dayand night-time estimates of hyperbenthic biomass (p>0.05). A hierarchical cluster analysis identified two significantly distinct groupings, designated the day and night samples. Results from the SIMPER procedure indicated that the high densities of crab zoeae recorded during the day-time accounted for the majority of the dissimilarity between the day and night groupings (44.7%). In addition, it is apparent that several benthic species, especially from the cumacean and isopod orders, were absent from the hyperbenthos during the day-time and emerged into the water column at night.

Temporarily open/closed estuaries (TOCEs) are the dominant estuary type in South Africa. These systems are often characterized by extensive beds of submerged macrophytes, which form important foraging and shelter habitats for fishes, especially for estuary-dependent fish species such as the Cape stumpnose Rhabdosargus holubi and Cape moony Monodactylus falciformis that are commonly associated with them. A loss of submerged macrophytes from an estuary has been shown to affect the fish community as well as reducing overall system productivity. The TOC East Kleinemonde Estuary, situated in the warm-temperate biogeographic region of South Africa has been subject to an ongoing long-term fish monitoring project since 1995. During the period 1995 to 2002, this estuary contained large beds of the submerged macrophytes Ruppia cirrhosa and Potamogeton pectinatus. However, subsequent to a major flood event in 2003 these macrophytes have been largely absent from this system. The effect of the loss of submerged macrophytes on the East Kleinemonde fish assemblage was investigated through an analysis of seine and gill net catch data. Seine net catches for a 12 year period, encompassing six years of macrophyte presence and six years of macrophyte senescence, revealed changes in the relative abundance of certain fish species. Vegetation-associated species such as R. holubi and M. falciformis decreased in abundance whereas sediment-associated species, especially members of the family Mugilidae, increased in abundance following loss of the macrophytes in this estuary. The critically endangered pipefish Syngnathus watermeyeri was only recorded in catches during years in which macrophyte beds were present. In addition to the analysis of catch data, the importance of macrophytes as a primary energy source for selected estuarine fishes was explored through the analysis of carbon and nitrogen stable isotopes. Prior to conducting these analyses, common methodological practices to address the presence of carbonates and lipids within isotope samples were evaluated. A subset of samples were either acid washed to remove carbonates, or lipids were removed according to the method of Bligh and Dyer (1959) as both of these compounds have been shown to affect stable carbon and nitrogen isotope ratios. The suitability of the lipid normalization models of Fry (2002) and Post et al. (2007) for samples of estuarine fish muscle were also tested. Based on this evaluation both models are suitable for use with estuarine fish muscle tissue, however since neither carbonate nor lipid content of any of the samples used in this study was high all samples were left untreated in the following analysis. Carbon isotope ratios from a wide range of fish species collected from the East Kleinemonde Estuary during the macrophyte-senescent phase were compared with individuals of the same species from the neighbouring West Kleinemonde Estuary (where extensive beds of R. cirrhosa and P. pectinatus were present) and revealed the influence of submerged macrophyte material in the diet of fishes in the latter system. However, it was apparent that these plants are not directly consumed but rather contribute to the detrital pool that forms a food source for most invertebrate and some fish species. The most significant source of carbon for East Kleinemonde fishes during the macrophyte senescent phase appeared to have a more depleted origin; probably from benthic or pelagic microalgae. In conclusion, while the importance of macrophyte beds as shelter and foraging habitats for estuarine fishes are well documented, their role in terms of the structuring and functioning of fish assemblages in TOCEs remains somewhat uncertain. The findings of this study were possibly masked by the resilience of vegetation-associated species to the loss of this habitat, as well as by life history characteristics of species such as R. holubi that allow their numerical dominance despite habitat change. Nonetheless, macrophyte senescence in the East Kleinemonde Estuary resulted in the loss of at least one species and the reduced abundance of vegetation-associated species, probably reflective of reduced food resources and/or increased vulnerability to predation. As a result, beds of submerged macrophytes are an important habitat within TOCEs.

Introduction. On the coast of the Bathurst Division, Eastern Cape Province, some 42 miles south- east of Grahamstown, lie two estuaries opening within a few yards of one another. These are known as the Kleinemonde. This paper embodies the results of an ecological survey of the fauna of the Larger Kleinmond Estuary. The chief concern has been the aquatic fauna but animals living along the banks have also been dealt with as far as possible, as have the birds. This is the second of South Africa's blind estuaries to be studied, the Klein River, Hermanus, having been investigated in 1947-49 by workers from the University of Cape Town. Though common in South Africa, blind estuaries are rare in parts of the world such as Europe, and present an almost entirely new field of research for the ecologist. It is hoped, therefore, that the investigation of the Kleinmond Estuary and a comparison with the results obtained from the Klein River, Hermanus, will add to our knowledge of this subject and be of service to future investigators. The history of the Kleimnond River is worthy of mention, for the lagoon was not always blind and shallow. The early maps of the 1820 settlers show the river as a navigable stream; sailing vessels anchored out at sea and sent lighters up what was then known as the Lydendoch River to collect fresh meat. The area at the mouth of the river was called Port Jessie. In these early days the region abounded with game. Hippo and elephant were common. the former inhabiting deep pools in the upper reaches of the river; pools which have since completely silted up. Constant ploughing of the slopes adjoining the river has caused vast amounts of soil to be washed by rains into the stream, and today what was within living memory a deep, clear stream is a shallow, blind and muddy river, a reflection of man's destructive methods of farming. These changes must have had a far-reaching effect on the fauna of the estuary; an effect about which we can, alas, only speculate. It is perhaps significant that though rich in numbers, the fauna is poor in species, tunicates and echinoderms being apparently entirely absent. The work involved in this survey was undertaken between September 1952 and November 1953, under the direction of Professor J . Omer-Cooper of Rhodes University, frequent and regular visits being made to the estuary. The entire month of February, 1953, was spent on the shore of the lagoon, so that animals could be observed over a continuous period. The starting date of the survey was particularly fortunate, as on September 28th, 1952, the river came down in flood and broke through the sand-bar separating the lagoon from the sea. The work thus began at a definite point in the estuarine cycle, the importance of which it is hoped to show.

INTRODUCTION: Estuaries have received considerable attention from biologists in southern Africa in the past thirty years. Professor J.H. Day and the Zoology Department of the University of Cape Town have undertaken ecological surveys of a large number of estuaries of a variety of types, laying the important groundwork for more detailed studies of single species or problems. Their studies showed that the fish populations of southern African estuaries consist mainly of marine species. Why and when these species enter or leave the estuaries and whether they grow or breed in them were not established. The only relatively detailed study of a fish in southern African estuaries was that of Talbot (1955) who investigated aspects of the growth, feeding and reproduction of Rhabdosargus globiceps (Cuvier). No quantitative information has been published on any of the fish species, perhaps due to the difficulty of obtaining such data; results such as population estimates, mortality rates and growth rates are particularly unreliable when the area being investigated is in direct contact with the sea. Studies relating to even a single species of fish are hampered by immigration and emigration between estuary and sea, which make the population continuously variable. The larger estuaries are also difficult to sample adequately, especially with regard to netting, except perhaps on a very large scale using expensive commercial equipment. Along the southern African coast many of the smaller estuaries with a limited catchment area are cut off from the sea for most of the year due to erratic rainfall and longshore drift of sand. These closed or 'blind' estuaries of south eastern Africa, of which there are at least thirty in the eastern Cape Province, provide excellent areas for studying estuarine fish populations which enter when the estuary is open to the sea, but become isolated once it closes. These fish which become cut off in closed estuaries are subject to a new series of conditions. They are exposed to the wider temperature and salinity fluctuations of an estuary and they are forced to utilise the food resources of the estuary. Additionally they may be subjected to predation from piscivorous birds, and those predatory fish which are also cut off in the estuary. These factors will affect the size, mortality, and growth rates of a fish population. Since the fish are isolated no recruitment from the sea can take place, and any increase in numbers would have to come from breeding within the estuary. It is inevitable that the most numerous species should receive attention first. Rhabdosargus holubi (Steindachner) (Synonomy : Sargus holubi Stndr, Austrosparus tricuspidens Smith, Rhabdosargus tricuspidens (Smith))(Plate 1) is one of the most abundant fish in the estuaries of the eastern Cape Province. According to Smith (1965) it is endemic to southern Africa, occurring from the Cape to Zululand, being most common between Mossel Bay and East London. It is largely replaced by Rhabdosargus sarba (Forskal) in the north of its range and by Rhabdosargus globiceps (Cuvier) in the south. Commonly called the 'flatty' or silver bream it is considered only as being of nuisance value by fishermen, seldom exceeding 30 cm in length. In this study the ecology of R.holubi was examined in relation to the closed West Kleinemond estuary which is a small 'blind' estuary typical of those found along the eastern Cape coast. The growth, mortality and population size of R.holubi in this estuary were investigated and linked where possible with predation and detailed studies into the tolerances, food, and feeding of the species. It was not known at the commencement of the study whether breeding could occur in estuaries, although Smith (1965) stated that R.holubi does breed in estuaries. During the course of the sampling programme in the West Kleinemond estuary, measurements of the growth and population structure of two other species of fish were recorded for comparison with R.holubi: the sparid Lithognathus lithognathus (Cuvier) (White Steenbras) and the piscivorous carangid Hypacanthas amia (L.) (Leervis or garrick). Laboratory studies on R.holubi were possible due to the fact that large numbers of this species could be caught in eastern Cape estuaries and transported to Grahamstown, where they could be maintained in captivity for up to four months in recirculating seawater aquaria. During the course of the study over 2000 fish were kept in captivity at different times for a variety of experiments. Another 2500 were preserved for gut analyses and lipid determinations, while over 5000 were captured, examined and released in the field.

Many of the larger estuaries along the South African coastline are highly degraded due to human impacts, highlighting the need to conserve pristine systems. There are approximately 100 micro-estuaries along our coastline which have not yet been identified or classified and hence their ecological functioning is unknown. The aim of this study was to identify and classify micro-estuaries along the Eastern Cape coast. Specific objectives of the study were to: 1) map the distribution of estuarine habitats in a selection of micro-estuaries and assess changes over time; 2) measure the physico-chemical characteristics of the micro-estuaries in the field; 3) investigate the distribution of vegetation, identify macrophyte species and habitat integrity and classify the micro-estuaries sampled using abiotic and botanical characteristics. A total of 30 systems were identified of which 10 were selected for sampling which took place seasonally (2015-2016). A relationship between open water surface area and short term rainfall was only evident in Cunge, Sandy Bottom and Ichabana. In the field it was observed that after heavy rainfall, open water surface area increased and mouth breaching occurred. Salinity was the only water column characteristic that showed differences; salinity increased in response to over wash events. Sand was dominant in all systems and there were no differences in sediment characteristics. A total of 8 macroalgal species, 16 estuarine macrophyte species, six freshwater species and 72 riparian plant species were found. Seed bank reserves were low in all systems despite them being vegetated. Only abiotic characteristics were used for classification using Principle Components Analysis since there were no botanical differences between systems. Micro-estuaries were larger (> 0.03 ha), had a higher salinity (oligohaline, mesohaline and polyhaline conditions) and a constant water body. Micro-outlets were smaller (< 0.03 ha), had a lower salinity (oligohaline conditions were most common) and showed periods of drying. Five micro-estuaries (Shelbertsstroom, Kwesani, Cunge, Mtwendwe and Mtendwe) and five micro-outlets (Stromatolite, Sandy Bottom, Ichabana, Palm Tree and Black Rock) were classified. This study has shown that the micro-estuaries along the Eastern Cape coast are pristine (i.e. intact riparian zone and catchment), untouched and highly dynamic systems (i.e. great variation in water surface area and mouth condition) highlighting their need for protection.

The St. Lucia Estuary, the largest estuary in South Africa, has been subject to many natural (a decade long drought) and anthropogenic impacts. A particular mouth manipulation activity, the artificial separation of the Mfolozi River and the St Lucia Estuary in 1952, was done to stop the perceived “silting up” of the estuary, but resulted in a decrease in freshwater supply. The changes in inflows (both fresh and marine) are controlled by management decisions and affect other system parameters such as salinity, water level and turbidity, which influence the distribution of biota. Therefore knowledge on the physico-chemical environment and eco-physiological tolerances of macrophytes will lead to informed future management decisions. The first of the three objectives carried out for this study determined the present state and distribution of the macrophytes of the St. Lucia and Mfolozi estuaries. The macrophyte habitats mapped in 2008 and 2013 were the submerged macrophytes, reeds and sedges, mangroves, grass and shrubs, salt marsh (succulent) and swamp forest. Results indicated that low salinity in the lakes and high water level in 2013 caused die-back or expansion of particular habitats. Submerged macrophytes, in particular Stuckenia pectinata, grows well in water with salinity <15 ppt, therefore this habitat increased by 412 ha (96%) in cover since 2008. Salt marsh decreased by 553 ha (57%) due to inundation. Since 2008 the reeds and sedges increased by 390 ha (in North Lake and the Narrows) due to the salinity decrease. In the Narrows the mangroves decreased by 28 ha (9%) in area cover. This was due to the drought that persisted for so many years, which caused low water levels and non-tidal conditions. The second objective was to determine the present state / health of the mangroves at four sites along the Narrows by assessing sediment condition and population structure of the trees. These results were compared to those obtained in 2010. The total density of Avicennia marina increased since 2010, however this was due to the large increase in seedlings at Site 1, the back channel site. The highest sediment salinity (26 ppt) and porewater salinity (29 ppt) was recorded for this site and these results show that this back channel site was strongly influenced by the open Mfolozi Estuary (increase in marine waters) and tidal conditions at the time of sampling in 2013. The total density of Bruguiera gymnorrhiza decreased, but an increase in adults was recorded at Site 2, the freshwater site. The soil collected from the Bruguiera quadrats was fresher and drier than that of the Avicennia quadrats of Site 2. Lack of seedlings (of both species) was due to the dense stands of Acrostichum aureum (mangrove fern) and Phragmites australis (common reed) and a thick, impenetrable mat of Avicennia pneumatophores. At Sites 3 and 4, the drier sites (where sediment moisture contents were the lowest for all sites at 43 and 42% respectively), seedling and sapling density was low, but adults increased in density since 2010. Recruitment and survival were impacted by the harsh environmental conditions that prevailed prior to 2013 (low water level and non-tidal influence), but adults survived. The results of the test that determined the percentage of aerenchyma of the pneumatophores indicated that waterlogging stress did not affect the aerenchyma of the pneumatophores. However the period of inundation was probably not significant enough to have affected the production of aerenchyma. The third objective formed part of an ongoing study by the Global Environmental Facility (GEF) on the feasibility of linking the Mfolozi River back to the St Lucia Estuary and the responses of these systems to different management scenarios: 1) the “do nothing” scenario; 2) maintain separate Mfolozi and St Lucia mouths representing an open mouth condition; and 3) actively facilitate a single mouth (therefore linking the Mfolozi and St Lucia mouths). Data gathered on the eco-physiological tolerances of the dominant macrophyte species was used to predict the response of the different habitats to these various management scenarios and the results indicated that the best management scenario would be to actively facilitate a single mouth (Scenario 3) as the estuary habitats would increase significantly because of preferred tidal and saline conditions, as this would represent more natural conditions. The results of the study will provide input to recommendations for future “adaptive management” strategies for the Global Environmental Facility (GEF) Project.

Estuaries require sufficient quantity, quality and appropriate timing of freshwater inflow, referred to as environmental flow requirements, to ensure adequate health and functioning. In South Africa the environmental flow requirements of estuaries is determined using Resource Directed Measures (RDM). The present health and importance of an estuary must be considered when determining the ecological flow required to maintain an estuary in its desired state. An Estuarine Health Index that quantifies changes in abiotic and biotic components from natural conditions to present day is used. Health of biotic components is assessed according to changes in species richness, abundance and community composition. There has, however, been debate regarding the calculation of these attributes. In particular, for macrophytes, the inclusion of all habitat within the Estuarine Functional Zone (i.e. 5 m topographical contour) would affect the health and changes over time determined in past assessments. This is due to different areas being included as different areas would be included The aim of this study was to test the validity and suggest improvements to South Africa’s RDM macrophyte health score determination. The health of macrophytes were assessed at varying levels of intensity from desktop studies to thorough field studies. Rapid field studies provided a visual estimate of macrophyte health; while the intermediate and comprehensive assessments quantified change by mapping the distribution of macrophyte habitats from aerial photographs. These approaches were applied to the 64 estuaries within the Mvoti-Mzimkulu Water Management Area (WMA 11), situated in KwaZulu-Natal (KZN) on the subtropical east coast. Historically, these estuaries have supported restricted macrophyte habitats. Consequently, estuaries that presently or historically supported range limited habitats such as mangroves and swamp forest are considered important. Submerged macrophytes are scarce in KZN estuaries due to siltation and low turbidity and thus estuaries supporting this macrophyte habitat are also important. Based on available literature important estuaries were highlighted and selected for field studies. Transects spanning from the estuary water channel to the boundary of the EFZ provided a generalised distribution of KZN vegetation along an elevation gradient. The transition from estuarine to terrestrial vegetation can be used to improve the current EFZ boundaries, as estuarine area has been found to occur outside of the 5 m contour in some estuaries. Results from the desktop assessment indicated that most of the estuaries are moderately modified. There was a 50 % similarity in the macrophyte health scores determined by the desktop assessment to the 2011 National Biodiversity Assessment (NBA). Field studies mostly confirmed the desktop assessment aside from seven estuaries that had different scores. There has been a significant loss of macrophyte habitat with 100% loss of certain habitats from 9 of the 22 estuaries for which there were field assessments. Submerged macrophytes were not found at any of the estuaries that were assessed in the field. Black mangroves, Bruguiera gymnorrhiza (L.) Lam., were rediscovered at Ngane Estuary, however the few individuals could not be considered a ‘mappable’ community (i.e. <0.5 ha). Mtamvuna and Mkomazi estuaries both supported small stands of mangroves that, compared to data from 2006, appeared healthy. Macrophyte habitats and surrounding coastal forest matched the species composition described in the Vegetation Map of South Africa. The freshwater mangrove or Powder puff tree, Barringtonia racemosa (L.) Roxb, was not abundant in the estuaries. It was only found at four (Damba, Fafa, Little Amanzimtoti and Mvoti) of the estuaries that were assessed in the field. Important estuaries, from a botanical perspective, included some of the larger estuaries such as Mgeni, Durban Bay and Sipingo. Smaller, healthier estuaries that presently support mangrove and swamp forest habitat were also identified as important from a botanical perspective. Macrophyte habitats have mainly been lost due to non-flow related pressures. Sugarcane cultivation occurred within the floodplain of 25% of the estuaries. Nutrient enrichment was evident for 12.5% of the estuaries and reed encroachment was evident for 27% of estuaries for which there were field assessments. Development, aside from the N2 road bridges, was evident for 40% of the estuaries assessed in the field. Invasive plant species, including aquatic invasive plants, were present in all estuaries assessed in the field. The extent of invasive plant species was related to the degree of disturbance and surrounding land use pressures. The Mkomazi and Mvoti estuaries that were assessed at a comprehensive level, as they have earmarked for further water abstraction, had the poorest macrophyte health scores. The macrophyte health of these estuaries was much lower than previously determined by the NBA. The decline in health was attributed to the removal of macrophyte habitat for sugarcane cultivation and development as well as displacement by invasive plant species. The areas covered by the macrophyte habitats also differed from the NBA highlighting the importance of updated mapping and ground truthing. Largely differing macrophyte health scores were produced when attributes were calculated using different combinations of macrophyte habitats. Results indicate that only macrophyte habitats and no other floodplain vegetation should be included when calculating abundance. All macrophyte habitats, physical habitats and floodplain should be incorporated when calculating community composition. The minimum of these attributes is used as the overall macrophyte health score as a precautionary approach is followed. Scoring of health is subjective and the only benchmark for determining the most appropriate method is comparion with previous RDM studies. This study illustrates the need for a standardised RDM scoring method that is presented in a manner that ensures the same results irregardless of the speciliast conducting the study. The updated estuary health and importance scores for WMA 11 are necessary to inform management, particularly as few of the estuaries receive formal protection. In conclusion, this study contributed to the limited knowledge of the estuaries of WMA 11 and assisted in determining appropriate methods for assessing the health and importance of estuary macrophytes.

“An estuary is a partially or fully enclosed body of watera) which is open to the sea permanently or periodically; b) within which the sea water can be diluted, to an extent that is measurable, with freshwater drained from inland” (National Water Act, 1998). Estuaries are ecologically important because they are habitats for birds, fish and plants and they are valuable because they provide human beings with food (fish) and recreational pleasure in the form of unique views, bird watching and opportunities for swimming and boating. It is in this context that they may be said to provide economic goods and services for current and future generations. The provision of these services is dependent on the inflow of freshwater into estuaries. The problem with estuarine freshwater demand is that estuaries are the ‘last in line’, literally and perhaps in the typical prioritisation of human wants by government. Clearly it is imperative that the value of freshwater inflows into estuaries be determined and these values incorporated into catchment management decision making. South African estuaries have in the past mainly been managed on a piecemeal basissometimes in the interest of fishermen, sometimes property development owners and sometimes other local interest groups. This situation changed with the National Water Act of 1998. One of its objectives was to address the mismanagement and inadequate research about water inflow impacts on estuaries (Allanson and Baird, 1999). The global warming phenomenon is going to negatively affect estuaries and put more pressure on the availability of freshwater inflows into estuaries, as well as the availability of drinking water. The majority of South African estuaries are temporally open/closed and experiencing reduced functioning due to reductions of freshwater inflow to them. Given the overwhelming evidence available on the significance of freshwater inflow to estuary functionality, it is clear that an important component of catchment management is the allocation of river water into estuaries. Economic guidance comes in the form of comparisons of value. There are seven estuaries for which values were generated, the Heuningnes, Kleinmond, Klein, Palmiet, Cefane, Kwelera and Haga- Haga. All of the seven estuaries fall in areas characterized by warm temperate climates and low rainfall levels. Estuary services, like many other environmental services, are not traded in the markets. For this reason, in order to estimate their value, reference must be made to proxy markets, and methods of valuation have to be employed that can use proxy market information - like the contingent valuation method (CVM), the travel cost method (TCM) and the hedonic pricing method (HPM). For the purpose of this research the CVM was preferred because it is best suited to including passive or nonuse values. The CVM estimated values are compared with other values generated using the TCM. The information required to make the CVs was gathered through surveys in at the seven selected estuaries from December 2005 to April 2006. From this information sample mean and median Willingness to Pay (WTP) values for freshwater were calculated, socio economic profiles were generated, the importance that respondents attached to various activities in the estuary was deduced, and, Tobit and Ordinary Least Squares (OLS) statistics models were used to predict household WTP. The Total WTP (TWTP) for each estuary was obtained by multiplying the median WTP by the total number of households that use the estuary. The median WTP is preferred to the mean WTP because of a skewed bid distribution of WTP among the users. The value per m3 of freshwater was obtained by dividing the TWTP by the total forecast reduction in water inflows into the estuary.