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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Explainable ML for drug prediction

Diaz-Roncero Gonzalez, Daniel January 2024 (has links)
Cancer may be treated with personalized medicine, meaning that specific patientsmight respond better to specific treatments instead of having a common treatment. TheReference Drug-based Neural Network (RefDNN) predicts whether a particular cancer cellline will resist a determined drug, but it fails to provide an explanations for this prediction.The thesis objective is to research on explainable machine learning methods to extractrule-based explanations from the RefDNN predictions and conclude on how confident wecan be about these explanations and whether they make sense from a biological point ofview. One of such explainable machine learning methods is Local Rule-based Explanation(LORE), which extracts rule-based explanations from any black box model using localdecision trees. In this thesis LORE is applied to explain the predictions of the RefDNNon a drug sensitivity dataset and three experiments are set up. First experiment tests theaccuracy and general performance of the extracted rule-based explanations. Second experimentstests the robustness of the rule-based explanations. Third experiments checks theglobal fidelity of the local decision trees used by LORE to mimic the RefDNN behaviour.Finally, one rule-based decision is explained from a biological point of view and conclusionsare made on the obtained results.

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