In this study, three new reports of large felids from the Pleistocene are presented and discussed. A single partial left dentary from Jawbone Cave represents the first confirmed presence of S. fatalis in east Tennessee and was sampled for radiocarbon dating. Wind Tunnel and Chilly Bowl Cave are among the first records of P. onca to be identified confidently from Arkansas. Chilly Bowl Cave also produced two trackways attributable to Panthera sp., one set potentially belonging to P. atrox. In addition to the description of these remains and the caves they were found in, taxonomic histories for both S. fatalis and P. onca are explored to explain the choice of name used for each felid. Regional reviews of material of each taxon are also presented.

Teratospermia (ejaculation of ≥ 60% structurally abnormal spermatozoa) is prevalent among felids facing extinction risk, including the cheetah. This trait also occurs in certain domestic cat populations, providing a valuable research model. Multiple components of sperm function are disrupted in teratospermic cats, and even structurally normal spermatozoa from these ejaculates may be functionally compromised. Teratospermic ejaculates are highly sensitive to damage during cryopreservation, limiting the success of genome resource banking programs for species conservation. Although both teratospermia and cryopreservation are linked to disruptions in multiple energy-dependent sperm processes, the metabolism of these cells has not been investigated. This project explored how cellular metabolism of domestic cat and cheetah spermatozoa is influenced by species physiology, teratospermia, and sperm cryopreservation. The project scope was divided into four studies that collectively examined the two main energy-producing pathways in spermatozoa, i.e., glycolysis and oxidative phosphorylation. Each study compared three animal populations: normospermic cat, teratospermic cat, and cheetah. First, rates of glycolytic and oxidative substrate utilization were correlated to standard metrics of sperm function. Second, the influence of exogenous substrate availability and glycolytic enzyme activity was investigated. Third, mitochondrial activity and the role of oxidative metabolism were assessed. Lastly, sperm metabolic function was examined after cryopreservation and postthaw processing.enzyme activity was essential for sperm function, but, unexpectedly, the importance of this pathway appeared to be linked to glycerol rather than glucose metabolism. Sperm oxidative metabolism was severely compromised in the cheetah, and comparison with the teratospermic cat proved this defect to be species-specific. Spermatozoa from both species experienced metabolic damage during cryopreservation. Post-thaw processing recovered a metabolicallynormal sperm subpopulation in the cat, but cheetah spermatozoa remained functionally compromised. Collectively, these studies provided key insight into metabolism and cryosensitivity of felid spermatozoa and highlighted the importance of domestic animal models for wildlife research. Patterns of substrate utilization were similar in spermatozoa of the cat and cheetah, including an unexpected lack of glucose uptake. However, rates of sperm pyruvate uptake and lactate production were reduced in the teratospermic cat and cheetah compared to the normospermic cat. Lactate production predicted ejaculate quality in each study. Glycolytic

AN ABSTRACT OF THE THESIS OF MARCUS C. ABSTON, for the Master of Science degree in ZOOLOGY, presented on 18 April 2017, at Southern Illinois University Carbondale. TITLE: EFFECTS OF OLFACTORY ENRICHMENT ON AFRICAN CHEETAHS (ACINONYX JUBATUS) MAJOR PROFESSOR: Dr. Carey Krajewski Environmental enrichment has been an essential part of felid husbandry in zoos, serving to reduce both physiological and psychological stress. Olfactory enrichment is one of many interventions used to prevent stereotypic behavior caused by stress in felids. However, little research has been done on this practice. The purpose of this study was to compare behavioral responses of four captive African cheetahs to six types of commercial fragrances used as olfactory enrichment stimuli. Three of these fragrances are marketed as “men’s cologne” and three as “women’s perfume”. The fragrances were also categorized as musky, spice, and floral types. Behavioral responses were recorded by live observations during 36 bouts at the St. Louis Zoo. There was a significant difference between cheetahs’ interaction time with male and female fragrances; they seemed to prefer male colognes. However, there was no significant difference in interaction time among fragrance types. Engagement behaviors varied among individuals (e.g. sniffing, scent rolling, pawing), but were similar to those reported by previous authors. These findings suggest that commercial fragrances may be a useful option for African cheetah olfactory enrichment.

<p>In this study I assessed the effect of objects and odors as environmental enrichment for two captive snow leopards (Uncia uncia) at Kolmården Wildlife Park. Five odors (lavender, lemon balm, cumin, cinnamon and catnip) were used to impregnate four different types of enrichment objects (boomer balls®, tennis balls, ropes, logs). During test sessions, one odorized and one non-odorized enrichment object of the same type were introduced in the snow leopards’ outdoor enclosure. The behavior, activity and location of the snow leopards were recorded and compared to their behavior during baseline sessions. During the test sessions I recorded the number and types of interactions with the enrichment objects. Both snow leopards interacted more often with odorized than with non-odorized enrichment objects. The number of interactions differed markedly between the types of enrichment objects and between the different odors. Both snow leopards interacted most often with boomer balls® and least often with logs. They interacted most often with cinnamon and least often with lemon balm (Brahma) and catnip (Binu). The results suggest that both the type of object and the odor play a role in capturing the interest of the snow leopards. The snow leopards behavioral diversity increased during the study and they could increase their performance of species-specific behavior. I did not see any indications of habituation during the testing period. The results indicate that enrichment objects impregnated with odors can be an effective environmental enrichment for captive snow leopards.</p>

In this study I assessed the effect of objects and odors as environmental enrichment for two captive snow leopards (Uncia uncia) at Kolmården Wildlife Park. Five odors (lavender, lemon balm, cumin, cinnamon and catnip) were used to impregnate four different types of enrichment objects (boomer balls®, tennis balls, ropes, logs). During test sessions, one odorized and one non-odorized enrichment object of the same type were introduced in the snow leopards’ outdoor enclosure. The behavior, activity and location of the snow leopards were recorded and compared to their behavior during baseline sessions. During the test sessions I recorded the number and types of interactions with the enrichment objects. Both snow leopards interacted more often with odorized than with non-odorized enrichment objects. The number of interactions differed markedly between the types of enrichment objects and between the different odors. Both snow leopards interacted most often with boomer balls® and least often with logs. They interacted most often with cinnamon and least often with lemon balm (Brahma) and catnip (Binu). The results suggest that both the type of object and the odor play a role in capturing the interest of the snow leopards. The snow leopards behavioral diversity increased during the study and they could increase their performance of species-specific behavior. I did not see any indications of habituation during the testing period. The results indicate that enrichment objects impregnated with odors can be an effective environmental enrichment for captive snow leopards.

Although Panamá is an important global hotspot for biodiversity, basic information on large carnivore and prey distributions as well as habitat needs is largely unknown. Wildlife studies in Panamá have been limited to populations located in protected areas along the Panamanian Atlantic Mesoamerican Biological Corridor (PAMBC) and have not considered potentially important refuge habitats located outside the PAMBC. Further, research on human attitudes and perceptions associated with large carnivores, such as jaguars (Panthera onca), is limited in Panamá. My study was conducted in 2 disparate study areas: Cerro Hoya National Park (CHNP), an isolated remnant of tropical rainforest habitat 125 km from the PAMBC that straddles the Veraguas and Los Santos provinces on the Azuero Peninsula; and Serranía de Pirre (SP), a comparative study area in the PAMBC located in Darién National Park (DNP). I used remote cameras to investigate patterns of site occupancy and detection probabilities, as affected by habitat and anthropogenic influences, for 3 species of felids (jaguars, pumas [Puma concolor], and ocelots [Leopardus pardalis]) and 2 species of peccaries (white-lipped [Tayassu pecari] and collared [Pecari tajacu]). In addition, I assessed attitudes and perceptions of rural Panamanians about jaguars and the conservation of CHNP and DNP via oral surveys. Site occupancy did not appear to differ between study areas for any felid or peccary, but detection frequencies and detection probabilities of focal species were overall higher in SP than CHNP. For collared peccaries, probability of detection was a function of survey year, study area, and Julian date, and estimated occupancy was higher in CHNP than SP. For ocelots, probability of detection was significantly higher in SP than CHNP when an ocelot was detected in a previous occasion. For pumas, detection increased with Julian date in CHNP but was seasonally unaffected in SP. Puma occupancy was higher closer to river systems. For jaguars, detection probability decreased with Julian date, increased with number of camera days per occasion, and was higher in SP than CHNP. Jaguars were more likely to use habitat at higher elevations in both study areas. White-lipped peccaries were never detected in CHNP, which may indicate their local extirpation in this region of Panamá. Regarding surveys measuring perceptions of rural people, factors such as gender, level of education, land ownership, and number of cattle affected knowledge and attitudes towards jaguars and criticism towards park management. Additionally, there was a higher frequency of human-jaguar conflict in SP than CHNP and coyotes (Canis latrans) were the most commonly reported threat to livestock in CHNP. My research elucidates previously unknown distribution limits of jaguars and coyotes in the Azuero Peninsula, as well as providing evidence for the potential local extirpation of white lipped peccaries in CHNP. I provide wildlife managers with improvements for survey design of future occupancy studies in the Neotropics. Further, my research provides targeted areas to prioritize for future wildlife conservation efforts and mitigation efforts concerning human-jaguar conflict.

The pantherine lineage of cats diverged from the remainder of modern Felidae less than 11 million years ago. This clade consists of the five big cats of the genus Panthera, the lion, tiger, jaguar, leopard, and snow leopard, as well as the closely related clouded leopard, which diverged from Panthera approximately 6 million years ago. A significant problem exists with respect to the precise phylogeny of these highly threatened great cats. Within the past four years, despite multiple publications on the subject, no two studies have reconstructed the phylogeny of Panthera with the same topology, showing particular discordance with respect to sister-taxa relationships to the lion and the position of the enigmatic snow leopard. The evolutionary relationship among these cats remains unresolved partially due to their recent and rapid radiation 3-5 million years ago, individual speciation events occurring within less than 1 million years, and probable introgression between lineages following their divergence. We assembled a 47.6 kb dataset using novel and published DNA sequence data from the autosomes, both sex chromosomes and the mitochondrial genome. This dataset was analyzed both as a supermatrix and with respect to individual partitions using maximum likelihood and Bayesian phylogeny inference. Since discord may exist among gene segments in a multilocus dataset due to their unique evolutionary histories, inference was also performed using Bayesian estimation of species trees (BEST) to form a robust consensus topology. Incongruent topologies for autosomal loci indicated phylogenetic signal conflict within the corresponding segments. We resequenced four mitochondrial and three nuclear gene segments used in recent attempts to reconstruct felid phylogeny. The newly generated data was combined with available GenBank sequence data from all published studies to highlight phylogenetic disparities stemming either from the amplification of a mitochondrial to nuclear translocation event, or errors in species identification. We provide an alternative, highly supported interpretation of the evolutionary history of the pantherine lineage using 39 single-copy regions of the felid Y chromosome and supportive phylogenetic evidence from a revised mitochondrial partition. These efforts result in a highly corroborated set of species relationships that open up new avenues for the study of speciation genomics and understanding the historical events surrounding the origin of the members of this lineage.

A predação de bovinos (Bos sp.) por onças-pardas (Puma concolor) e onçaspintadas (Panthera onca) foi registrada durante seis anos em uma propriedade rural no Norte do Estado de Goiás, Centro-Oeste do Brasil. A pesquisa teve os objetivos de verificar: (1) quanto bovinos são predados por onças; (2) qual a faixa etária mais predada; (3) se existe sazonalidade na ocorrência da predação e (4) qual sua distribuição espacial em relação aos elementos constituintes da paisagem. A predação foi registrada e quantificada com auxílio dos retireiros e responsáveis pelo manejo dos bovinos, que forneceram em uma ficha o nome do observador, data, retiro, número do pasto, causa da morte, idade e sexo. A predação representou 21,7% (n=309) da mortalidade total de bovinos. Os bovinos predados representaram uma biomassa média anual de 63,8 kg/km², que foi equivalente a 0,4% do estoque médio anual de bovinos. A categoria mais predada foi o bezerro. A predação se associou fortemente à idade dos animais predados, ocorrendo mais com bezerros de até 2 meses e diminuindo gradativamente com o aumento da idade. A predação foi influenciada pela categoria de bovinos (idade e sexo), local e período de nascimentos. Ficou evidente que a predação foi diferente espacial e temporalmente. Dessa forma, um conjunto de medidas preventivas foi sugerido para reduzir a predação de bovinos e garantir a conservação das onças. / Data on cattle predation by pumas (Puma concolor) and jaguars (Panthera onca) has been recorded for six years in a farm in Northern Goiás, Mid-Western Brazil. This research’s main objectives were to determine: (1) the actual proportion of cattle killed by big cats; (2) whether there was a certain age class targeted by those predators; (3) whether the predation fluctuated along the year and (4) the spatial distribution of cattle predation. Data were recorded by employees and cattle managers using forms with the following information (observer’s name, date, id numbers, cause of mortality, age and sex). Predation represented 21,7% (n=309) of the overall cattle mortality. In biomass, kills represented 0,4 % of the farm’ annual stock with 63,8 kg/km². Predation was strongly correlated with cattle’s age with most attacks occurring on calves younger than 2 months old then gradually decreasing the animals get older. Predation was mainly associated with cattle’s age class and location along with the time of the births it occurred. It clearly appeared that cattle predation varied spatially and temporally. We recommended several preventive techniques to be used in order to limit cattle predation in rural farming contexts so as to reduce the conflict between villagers and large felids and thus enhance the last big cats’ conservation.

A predação de bovinos (Bos sp.) por onças-pardas (Puma concolor) e onçaspintadas (Panthera onca) foi registrada durante seis anos em uma propriedade rural no Norte do Estado de Goiás, Centro-Oeste do Brasil. A pesquisa teve os objetivos de verificar: (1) quanto bovinos são predados por onças; (2) qual a faixa etária mais predada; (3) se existe sazonalidade na ocorrência da predação e (4) qual sua distribuição espacial em relação aos elementos constituintes da paisagem. A predação foi registrada e quantificada com auxílio dos retireiros e responsáveis pelo manejo dos bovinos, que forneceram em uma ficha o nome do observador, data, retiro, número do pasto, causa da morte, idade e sexo. A predação representou 21,7% (n=309) da mortalidade total de bovinos. Os bovinos predados representaram uma biomassa média anual de 63,8 kg/km², que foi equivalente a 0,4% do estoque médio anual de bovinos. A categoria mais predada foi o bezerro. A predação se associou fortemente à idade dos animais predados, ocorrendo mais com bezerros de até 2 meses e diminuindo gradativamente com o aumento da idade. A predação foi influenciada pela categoria de bovinos (idade e sexo), local e período de nascimentos. Ficou evidente que a predação foi diferente espacial e temporalmente. Dessa forma, um conjunto de medidas preventivas foi sugerido para reduzir a predação de bovinos e garantir a conservação das onças. / Data on cattle predation by pumas (Puma concolor) and jaguars (Panthera onca) has been recorded for six years in a farm in Northern Goiás, Mid-Western Brazil. This research’s main objectives were to determine: (1) the actual proportion of cattle killed by big cats; (2) whether there was a certain age class targeted by those predators; (3) whether the predation fluctuated along the year and (4) the spatial distribution of cattle predation. Data were recorded by employees and cattle managers using forms with the following information (observer’s name, date, id numbers, cause of mortality, age and sex). Predation represented 21,7% (n=309) of the overall cattle mortality. In biomass, kills represented 0,4 % of the farm’ annual stock with 63,8 kg/km². Predation was strongly correlated with cattle’s age with most attacks occurring on calves younger than 2 months old then gradually decreasing the animals get older. Predation was mainly associated with cattle’s age class and location along with the time of the births it occurred. It clearly appeared that cattle predation varied spatially and temporally. We recommended several preventive techniques to be used in order to limit cattle predation in rural farming contexts so as to reduce the conflict between villagers and large felids and thus enhance the last big cats’ conservation.