Thesis (M.S.)--University of Michigan, 1983.

Thesis (M.S.)--University of Michigan, 1985.

Thesis (M.S.)--University of Michigan, 1985.

Thesis (M.S.)--University of Michigan, 1983.

Thesis (Ph. D.)--University of Washington, 2007. / Vita. Includes bibliographical references (leaves 187-206).

The influenza A viral hemagglutinin (HA) protein binds to sialic acid (SA) groups of cellular surface glycoproteins to achieve viral attachment and entry. The SA binding specificity of HA is one of the major determinants for controlling viral tropism and host specificity. Fibronectin (FN) is a ubiquitinious glycoprotein secreted on cell surface, either circulating in plasma, or as one of the best characterized components of the extra cellular matrix. With its binding properties towards different types of molecules and pathogens, it has been utilized by different bacterial and viral pathogens for binding, entry, propagation and pathogenesis. The binding affinity and region of plasma FN to influenza A viral glycoprotein was identified in early 1980s. Evidence also suggests the binding is SA associated. FN associates with different viral pathogens. However, evidence of FN direct involvement in influenza A pathogenesis remains unknown. The objective of this thesis is to test the involvement of cellular FN in influenza A viral infection. To perform the study, FN siRNA and anti-FN antibody were applied. This study demonstrated possible involvement of FN in the replication of human H1N1 and highly pathogenic avian H5N1 viruses. It also discovered that FN is very important for the replication of H1N1 virus, but not H5N1 virus. Interestingly, the result suggested that FN does not affect the initial virus-host binding, but it has an effect on post-attachment events. Key amino acid positions controlling the SA binding specificity of seasonal human or avian influenza A viruses have been identified in the HA. In this thesis, reverse genetics and mutagenic work identified that viruses with a α2,3-linked SA (SA α2,3) binding preference were not inhibited by anti-FN antibody, while viruses with a α2,6-linked SA (SA α2,6) specificity were severely inhibited. This surprising finding of SA binding preference related FN involvement in post-attachment event led to the further investigation on the structural involvement of FN and viral entry pathway analysis. The 9th and 10th of type III repeating units of FN form the cell-binding domain of the protein for cell attachment. From site specific antibody inhibitory studies, the cell binding region of FN near the synergy adhesion site(SAS) and Arg-Gly-Asp-Ser(RGDS) cell adhesion signal was identified to be important for the replication of viruses that have a α2,6 SA binding preference, but it was also found to be independent of α5β1 integrin receptor. After attaching to a host cell, the virus was internalized in an endosome via clathrin- or caveolin- mediated endocytosis. By application of pathway inhibitors, the FN association with viral entry pathway was evaluated. Though this study failed to identify a single specific FN mediated viral entry pathway, this pathway study indicated the possibility of FN various involvement in influenza viral entry. The study indeed indicated that viruses have difference SA binding preferences are different in their choices in viral entry pathways. This thesis did not only introduce cellular FN as a novel host factor, but also identified possible target and brought new light in the control of influenza A viral infection. / published_or_final_version / Public Health / Doctoral / Doctor of Philosophy

Thesis (doctoral)--Uppsala University, 1983. / Includes bibliographical references (p. 29-40).

No description available.

The notochord is a conserved structure in the phylum chordate, which includes all vertebrates and some closely related invertebrates. In mouse embryos, the notochord is a midline structure underneath the neural tube and it consists of a rod of cells constrained by a thick extracellular sheath, which is rich in fibronectin and other extracellular matrix molecule. During notochord formation, two key processes are involved: cell migration and convergent extension. Two molecules are essential for these processes: fibronectin and Protein Kinase C iota (prkci). For cell migration, fibronectin regulates this process by modulating cell protrusion via a signaling pathway in which atypical protein kinase C (aPKC) is an essential factor. For convergent extension, fibronectin has been shown to be important in this process by regulating both cell migration and cell adhesion. The role of aPKCin convergent extension is revealed as it is asymmetrically expressed in Ciona notochord during convergent extension, indicating possible function of aPKC in convergent extension process and in the morphogenesis of notochord. These studies raised the possibility that fibronectin and prkci are important in notochord formation, by regulating cell migration and convergent extension. In this thesis, Cre/loxP system was used to study the function of fibronectin and prkci in the development of notochord. I provided evidence that conditional deletion of fibronectin by Foxa2-Crein the notochord resulted in a notochord of smaller volume and fewer notochordal cells. The nucleus pulposus was also smaller in are and less in cell number. Fibronectin in the notochord was not affected at E9.5, but diminished in the core of the notochord at E12.5 and in nucleus pulposus at E15.5. The phenotypes of smaller notochord and the nucleus pulposus might be the results of reduced notochordal cell proliferation and increased cell death. However, more samples are needed to analyze to confirm this and perform statistical analysis. In addition, convergent extension of notochord seemed less effective. These results are consistent with previous study about fibronectin and α5β1 integrin. The results suggest that fibronectin is required for notochordal cell proliferation, survival, migration and efficient convergent extension, but not for notochordal cell fate determination. The results also demonstrated that prkci seemed not to be important for notochord development. / published_or_final_version / Biochemistry / Master / Master of Philosophy

Living cells keep sensing the changes in their environments, mostly, via cell surface receptors for different ligands. Attachment-dependent cells are sensitive to alterations in extracellular matrix (ECM). ECM is not only required for cell survival, but also prerequisite for epidermal growth factor (EGF) to stimulate cell proliferation. The receptors for the majority of ECM components are integrins and the receptor for EGF is EGF receptor (EGFR). When bound by their ligands, integrins and EGFR induce signal transduction cascades composed of alternative pathways. A quantitative assessment of relative contributions of alternative pathways to one final cell signaling will help understand designing principles of the network. Unfortunately, a methodology for such assessment is still not available, partly because of lack of relatively mature mathematical models. On the other hand, in most biochemical cascades, existence of alternative pathways increases the complexity and thus the robustness of networks. The relationships between the topology and robustness of large-scale biochemical networks have been studied intensively recently. In small-scale networks, while feedback has been revealed as an important contributor for adaptation and robustness, the quantitative correlation between the topology/pathway redundancy of small networks and their robustness remains unknown. / In this thesis, apoptosis of bovine mammary gland epithelial cells was demonstrated to be induced when fibronectin, one of the major components of ECM, was degraded by overexpressed tPA via two potential ways: deprivation of attachment and the effects of fibronectin fragments. Secondly, a mathematical model for EGFR activation of the MAPK cascade, in which alternative pathways exist, was explored and it was found that the Shc-dependent pathway is both redundant and dominant. We hypothesize that the Shc-dependent pathway is important for EGFR to compete with other receptors, which need Shc to transduce cell signals; and this pathway is not aimed to increase the robustness of the EGFR cascade. Finally, for the general importance of alternative pathways to the network topology and robustness, several concepts have been proposed to decompose and quantitatively characterize the networks. We demonstrate that the pathnet score is a better assessment for robustness than the molecular connectivity.