A fishery-dependant monitoring method of the recreational shore-based fishery was undertaken in the Goukamma Marine Protected Area (MPA) on the south coast of South Africa for a period of 17 months. The method used was a roving creel survey (RCS), with dates, times and starting locations chosen by stratified random sampling. The MPA was divided into two sections, Buffalo Bay and Groenvlei, and all anglers encountered were interviewed. Catch and effort data were collected and catch per unit effort (CPUE) was calculated from this. The spatial distribution of anglers was also mapped. A generalized linear model (GLM) was fitted to the effort data to determine the effects of month and day type on the variability of effort in each section. Fitted values showed that effort was significantly higher on weekends than on week days, in both sections. A total average of 3662 anglers fishing 21 428 hours annually is estimated within the reserve with a mean trip length of 5.85 hours. Angler numbers were higher per unit coastline length in Buffalo Bay than Groenvlei, but fishing effort (angler hours) was higher in Groenvlei. Density distributions showed that anglers were clumped in easily accessible areas and that they favored rocky areas and mixed shores over sandy shores. Catch documented between October 2008 and December 2009 included a total of 361 fish, of 27 species from 12 families. Sparidae had the highest contribution (12 species). A Shannon-Weiner diversity index showed that diversity was higher in Buffalo Bay (0.81) than Groenvlei (0.57). Catch composition of retained fish (336 individuals) showed that the six numerically most important species were blacktail (Diplodus sargus capensis) (66 percent of catch), followed by galjoen (Dichistius capensis) at 11 percent, Cape stumpnose (Rhabdosargus holubi), belman (Umbrina robinsonii) and strepie at 3 percent, and elf (Pomatomus saltatrix) at 2 percent. Catch composition of an earlier study in Goukamma (Pradervand and Hiseman 2006) was compared with the present study, as well as data from the De Hoop MPA, which is closed to fishing. A multi-dimensional scaling plot of catch composition showed tight clustering of the De Hoop samples, and high variability among the Goukamma samples. A bray-curtis similarity index and dendrogram of similarity between study sites and study periods showed that there was an 83 percent similarity among De Hoop samples and a 75 percent similarity among Goukamma samples (ignoring the two outliers). The two sites are different with respect to species composition, but this is expected because they are different areas. Differences between time periods in Goukamma (i.e. the previous study versus the present study) were not significant. The most significant result from the catch composition analyses is the high variability among the Goukamma samples. This can be explained by the variable fishing methods used by anglers in Goukamma, compared with the standardized fishing methods used by researchers in De Hoop, and the fact that fish are more abundant and populations are more stable in De Hoop – giving higher sample sizes which reduce the variability in the statistics. Species-specific CPUE was calculated for the six numerically most important species. In both sections, CPUE was highest for blacktail, with an average of 0.133 fish per hour for Groenvlei, and 0.060 fish per hour for Buffalo Bay, over the 12 months. The second highest CPUE values per section were 0.030 for galjoen in Groenvlei and 0.039 for strepie in Buffalo Bay. Remaining CPUE values ranged from 0.014 (belman in Groenvlei) to the lowest value of 0.001 (strepie in Groenvlei). Total estimated CPUE for these six species in the MPA using the estimated effort and catch results amounted to 0.018 fish per hour. An annual estimated 3897 fish were landed in the reserve during 2009. Most fish (n=2481, 64 percent) were caught in the Groenvlei section. Numbers of blacktail were the highest of all species, within both sections (2353 fish). Strepie was the next most common (561 fish), but was caught almost entirely within the Buffalo Bay section (97 percent of individuals), followed by galjoen (548 fish) caught mostly within the Groenvlei section (92 percent of individuals). Size comparisons of the six species between the Goukamma and De Hoop MPAs showed that ranges in size are similar, but there are substantial differences in mean sizes between the two MPAs. Sample sizes of all species from the Goukamma MPA were too small to draw conclusions about stock status, except for blacktail. The Goukamma MPA is a popular fishing destination and angler effort is high. It can be considered a node of exploitation for surf zone fish, for which it provides no protection. Even though the MPA allows shore angling, sustainable fishing practices should be incorporated in management plans if the MPA is expected to protect and conserve its stocks. Of noteworthy concern is the occurrence of illegal night fishing (the public may not enter the reserve between sunrise and sunset) which leads to underestimates of catch and effort (night surveys were not conducted because of safety concerns). It is recommended that more communication should take place between the angling community and the reserve management. Sign boards giving information on species which are under pressure, and why they are under pressure, with a short explanation on their life cycles, is advised. The roving creel survey method was suitable for the study area and delivered statistically rigorous results. I thus recommend that it is continued in the future by management. I make some recommendations for reducing costs of future surveys, as well as for altering the survey design if funds are very limited.

The geelbek Atractoscion aeguidens is an important commercial and recreational linefish species along the South African eastern seaboard . Aspects of its biology and population dynamics were investigated using data collected from various sampling sites along the South African east coast and from catch statistics obtained from both the Sea Fisheries Research Institute (Cape Town), and dealer records. The biological aspects studied included age and growth, reproduction and feeding. It was established that A. aeguidens is a fast growing species with a relatively late age at sexual maturity and a 1:1 sex ratio. Feeding studies revealed that it has become specialized to feed on small pelagic fish. The South African geelbek stock consists of three distinct age related sub-populations, each representing a particular phase in the life cycle. The sub-adults (1-4 yrs) occur in the South West Cape and feed predominantly on anchovy, Engraulis capensis, which they follow, moving inshore in summer and offshore in winter. The adults (5-9 yrs) undergo a seasonal inshore migration to Natal where they spawn in spring. The dynamics of this migration are strongly influenced by the annual movement of their principal prey viz. , Sardinops ocellatus, to that region. As a result the geelbek first arrive in Natal during mid winter. Evidence is also presented to suggest that a significant number of "adolescent " fish (4-5 yrs) undergo limited gonad maturation and a partial migration to at least as far as the South East Cape. Spawning appears to occur offshore. It is postulated that eggs and larvae are transported southwards by the peripheral waters of the Agulhas Current. After spawning the adults probably remain offshore and use the current to aid their return to the South and South West Cape, where they spend summer feeding on the Agulhas Bank. Juveniles (<1 yr) first appear in the South East Cape between January and March. They apparently use this region as a nursery area for almost a year before moving southwards to join the sub-adults in the South West Cape. In the South East Cape, the juveniles feed initially on mysids whereafter they switch to anchovies and pilchards. A preliminary stock assessment using yield per recruit and spawner biomass per recruit models, indicated that despite the current legislation the South African geelbek population is already overexploited. This is largely attributed to high rates of fishing mortality of the migratory adult population. Further management recommendations are therefore proposed. These include a size limit (660 mm FL), derived from an investigation of the interrelationship between natural mortality and somatic growth in a theoretical unexploited cohort, as well as a uniform bag limit for all user groups (5 fish per person per day)

Sharks are particularly vulnerable to over-exploitation. Although catsharks are an important component of the near-shore marine biodiversity in South Africa and most of the species are endemic, little is known about their movement patterns, home range and population size. With an increasing number of recreational fishers this information is crucial for their conservation. The aims of this study were threefold. Firstly, to identify and analyze existing data sources on movement patterns and population dynamics for four catshark species: pyjama (Poroderma africanum), leopard (P. pantherinum), puffadder (Haploblepharus edwarsii) and brown (H. fuscus). This highlighted a number of shortcomings with existing data sets, largely because these studies had diverse objectives and were not aimed solely at catsharks. Secondly, a dedicated study was carried out for a limited area, testing a number of methods for data collection, and where appropriate the data was analyzed to determine movement patterns and population numbers. Thirdly, the most appropriate methodology for future studies (with similar objectives) was identified, and the results of the study were used to propose a number of conservation measures. All species of catsharks exhibited strong site fidelity and limited dispersal for extended periods. A few individuals did, however, travel distances in excess of 150 km. Significant trends in temporal abundance were not observed, nevertheless, there was some evidence for higher catches from September to December. Population estimates for the study area were low, with P. africanum having the smallest population size while H. fuscus had the highest population size within the restricted study area. Limited movements, high site fidelity and small population sizes emphasize their vulnerability and suggest that catsharks would benefit from no-take marine protected areas.

Thesis (MSc)--University of Stellenbosch, 2000. / ENGLISH ABSTRACT: Endemic redfin minnows of the Olifants River System are under threat of extinction, mainly because of alien predatory fish, water extraction and pollution. The taxonomic position and biogeography of redfins in relation to other barbs are uncertain. Enzyme electrophoresis was employed to assess genetic differentiation within and among certain Barbus and Pseudobarbus taxa. Fourteen enzymes were routinely recorded from muscle tissue extracts, yielding a differential number of active loci. The latter is due to different ploidy levels. Polyploid species showed fewer loci than the tetraploid or hexaploid number of loci expected just after the polyploidy event. Barbus aenus (hexaploid) expressed 6.2 % of the duplicated loci expected after the hexaploidy event. The tetraploid Pseudobarbus and serrated Barbus spp., expressed 37.5 % and 31.2 % of the duplicated loci expected after the tetraploidy event, respectively. This suggests that the ploidy event in Barbus aenus is more ancient than in the above-mentioned tetraploid barbs. The similar amount of diploidization in Pseudobarbus and tetraploid serrated Barbus spp. investigated, suggests a shared ploidy event between these two lineages. The number of active loci is apparently not a good indication of the ploidy level of African barbs, as hexaploid Barbus aenus expressed less active loci than the tetraploid barbs investigated. Initial screening of allozyme loci yielded fixed allele differences at 22 loci, but polymorphism only at seven. This suggests more potential for delineating species boundaries than for assessing gene flow and genetic diversity of populations. Genetic differentiation within and among populations of Pseudobarbus phlegethon, Barbus calidus and Barbus erubescens were investigated by screening 27 allozyme loci. A clear divergence between Pseudobarbus phlegethon populations from the Olifants and Doring Rivers was found (Nei's unbiased genetic distance = 0.355; F-statistic for subpopulation against the total = 0.877). Preference and adaptation for mountain stream habitat might explain the past isolation and subsequent divergence of Pseudobarbus phlegethon populations between these two rivers. Barbus calidus was genetically homogenous over its distribution (Nei's unbiased genetic distance = 0-0.009; F-statistic for subpopulation against the total = 0.135). It is proposed that Barbus calidus is better adapted than Pseudobarbus phlegethon to disperse through the main stream. The genetic divergence between Barbus calidus and Barbus erubescens (Nei's unbiased genetic distance = 0.063) is characteristic of conspecific populations. There seems to have been a loss of genetic diversity in redfin populations of the Doring River tributaries (heterozygosity = 0-0.01), compared to the redfin populations of the Olifants River tributaries (heterozygosity = 0.01- 0.04). From phylogenetic analysis ofallozyme characters, it seems as if the serrated tetraploid barbs from South Africa is the sister-group of Pseudobarbus, whilst Barbus anoplus was rejected as a sister-species for the latter. Barbus calidus, Barbus erubescens and Barbus serra were found to be closely related to each other. The ancestor of the redfins seems to have been present in the Cape Fold Mountains since at least the late- Tertiary. On the basis of distributional and allozyme information, conservation units reflecting historical divergence, historical gene flow and current gene flow were identified as Evolutionarily Significant Units, Historical Management Units and Current Management Units respectively. The Olifants and Doring River populations of Pseudobarbus phlegethon should be recognized as two distinct Evolutionarily Significant Units. Barbus calidus forms a separate Evolutionarily Significant Unit from Barbus erubescens. Twelve Historical Management Units and nineteen Current Management Units were recognized for redfins of the Olifants River System. The size of Current Management Units should be expanded and secured to prevent loss of genetic diversity. It is recommended that a recovery program of redfins should establish new populations of at least Barbus erubescens and Doring River Pseudobarbus phlegethon Evolutionarily Significant Unit. Centrarchids should be irradicated, as they are the main reason for the decline of red fins. / AFRIKAANSE OPSOMMING: Die endemiese rooivlerkies van die Olifantsriviersisteem word bedreig deur uitsterwing, hoofsaaklik as gevolg van uitheemse roofvisse, water onttrekking en besoedeling. Die taksonomiese posisie en biogeografie van rooivlerkies in verhouding met ander barbusse is onseker. Ensiemelektroferese is gebruik om genetiese differensiasie binne en tussen sekere Barbus en Pseudobarbus taksa te bepaal. Veertien ensieme, wat verskillende hoeveelhede aktiewe lokusse gelewer het, is op roetine basis waargeneem uit spierweefselekstrakte. Die verskillende hoeveelhede aktiewe lokusse wat waargeneem is, is as gevolg van verskillende ploied vlakke. Poliploïede spesies het minder lokusse getoon as wat verwag sou word net na die tetraploïede ofheksaploïede gebeurtenisse. Barbus aenus (heksaploïed) het 6.2% van die gedupliseerde lokusse, wat verwag sou word na die heksaploiede gebeurtenis, uitgedruk. Die tetraploïede Pseudobarbus en saagagtige Barbus spp. het 37.5% en 3l.2% respektiewelik van die gedupliseerde lokusse, wat verwag sou word na die tetraploïede gebeurtenis, uitgedruk. Dit dui daarop dat die ploïede gebeurtenis in Barbus aenus meer histories as in die bogenoemde tetraploïede barbusse. Die soortgelyke hoeveelheid diploïedisasie in Pseudobarbus en tetraploïede saagagtige Barbus spp. wat ondersoek is, dui op 'n moontlike gesamentlike ploïede gebeurtenis tussen hierdie twee evolusionêre lyne. Die aantal aktiewe lokusse blyk nie 'n goeie aanduiding van die ploïed vlakke van Afrika barbusse te wees nie, aangesien die heksaploïede Barbus aenus minder lokusse as die tetraploïede barbusse wat ondersoek is, getoon het. Aanvanklike analisering van allosiem lokusse het vaste alleel verskille in 22 lokusse opgelewer, maar slegs sewe het polimorfisme getoon. Dit dui op moontlike beter potensiaalom spesie-grense vas te stel, eerder as die bepaling van genevloei of genetiese diversiteit van populasies. Genetiese differensiasie binne en tussen populasies van Pseudobarbus phlegethon, Barbus calidus en Barbus erubescens is ondersoek deur 27 allosiem lokusse te analiseer. 'n Duidelike divergensie tussen Pseudobarbus phlegethon populasies van die Olifants- en Doring- riviere is gevind (Nei se onbevooroordeelde genetiese afstand = 0.355; F-statistiek vir subpopulasie teen die totaal = 0.877). Voorkeur en aanpassing vir bergstroom habitat, mag moontlik die historiese isolasie en daaropvolgende divergensie van Pseudobarbus phlegethon populasies tussen hierdie twee riviere verduidelik. Barbus calidus was geneties homogeen oor sy verspreiding (Nei se onbevooroordeelde genetiese afstand = 0-0.009; F-statistiek vir subpopulasie teen die totaal = 0.135). Dit word voorgestel dat Barbus calidus beter aangepas is as Pseudobarbus phlegethon om deur die hoofstroom te versprei. Die genetiese divergensie tussen Barbus calidus en Barbus erubescens (Nei se onbevooroordeelde genetiese afstand = 0.063) is kenmerkend van spesiespesifieke populasies. Dit lyk of daar 'n verlies aan genetiese diversiteit in rooivlerkie populasies vanafdie Doringrivier sytakke was (heterosigositeit = 0-0.01), in vergelyking met rooivlerkie populasies vanafdie Olifantsrivier sytakke (heterosigositeit = 0.01- 0.04). Uit die filogenetiese analise van allosiem kenmerke, blyk dit dat die saagagtige tetraploiede barbusse van Suid-Afrika die sistergroep van Pseudobarbus is, terwyl Barbus anoplus verwerp word as sisterspesie vir laasgenoemde. Dit is gevind dat Barbus calidus, Barbus erubescens en Barbus serra baie naverwant aan mekaar is. Dit lyk asof die voorvader van die rooivlerkies sedert ten minste die laat-Tersiêr in die Kaapse Plooiberge aanwesig was. Bewaringseenhede wat historiese divergensie, historiese genevloei en huidige genevloei voorstel, is geidentifiseer respektiewelik as Evolusionêre Beduidende Eenhede, Historiese Bestuurseenhede en Huidige Bestuurseenhede. Dit is gedoen op grond van verspreidings- en allosieminformasie. Die Olifants en Doring populasies van Pseudobarbus phlegethon moet as twee unieke Evolusionêre Beduidende Eenhede erken word. Barbus calidus en Barbus erubescens vorm aparte Evolusionêre Beduidende Eenhede. TwaalfHistoriese Bestuurseenhede en negentien Huidige Bestuurseenhede is geidentifiseer vir rooivlerkies van die Oifantsriviersisteem. Die grootte van Huidige Bestuurseenhede moet vergroot en beveilig word om verlies van genetiese diversiteit te vermy. Dit word voorgestel dat 'n herstelprogram van rooivlerkies moet poog om nuwe populasies, van ten minste Barbus erubescens en Doringrivier Pseudobarbus phlegethon Evolusionêre Beduidende Eenhede, te vestig. Baars en blouwang sonvis moet uitgeroei word, aangesien hulle die hoofoorsaak is vir die afname van rooivlerkies.

The primary aim of this study was to investigate the population dynamics of the fishes associated with a small (17.5 hectares) temporarily open/closed estuary on the south east coast of South Africa. The results are based on the findings of an intensive sampling programme conducted over a period of four years in the East Kleinemonde estuary (33° 32' S : 27° 03' E). By adopting a quantitative approach, this study addresses the need for information on estuarine-associated fish population sizes, standing stock (biomass) estimates and productivity. The ichthyoplankton assemblage in the surf zone adjacent to the mouth of the estuary was dominated by postflexion larvae representing at least 21 taxa in 14 families. Rhabdosargus holubi of sizes ranging between 9 mm and 21 mm BL was the most abundant species with a mean density of 7.3 individuals per 100 m'. This species, which accounted for 77.6% of the catch composition, was recorded throughout the year but revealed a distinct peak in abundance in spring (August - September). The ichthyofaunal community within the East Kleinemonde estuary was dominated by juvenile marine-spawning species and typical of a warm temperate southern African estuary. A total of 30 species in 17 families was recorded, including the endangered estuarine pipefish Syngnathus watermeyeri. Multivariate analyses (classification and ordination) of the catch assemblages revealed a high degree of similarity (> 70%) throughout the estuary, with two distinct groups being identified on the basis of substratum type. The sampling stations near the mouth with a sandy substratum were distinguished from all other sampling sites in the estuary. The dominant estuarine-spawning species were represented by all life-history stages, suggesting that they bred successfully in the estuary. This group was numerically and gravimetrically dominated by the two zooplanktivorous shoaling species Gilchristella aestuaria and Atherina breviceps with density extrapolated population size estimates of 420 973 and 198 275 individuals, and biomass estimates of 1.6 and 0.6 g m⁻² respectively. The total population size of all estuarine-spawning species with a mean biomass 00.4 g m⁻² was estimated at 754 217 individuals. Population size estimates of the marine-spawning species were calculated using data obtained from three independent mark-recapture experiments. The assumptions for the mark-recapture analyses were adequately met and it was concluded that the techniques provided reliable estimates of population size. However, estimates obtained from density extrapolation revealed enormous variability and were considered to be unreliable. The total population size was estimated at 63 342, 18 592 and 13 5 192 during the three mark-recapture experiments respectively. The numerically dominant species during all three experiments was Rhabdosargus holubi. Biomass production of the marine-spawning species was evaluated over a 123 day census period when population sizes and estimates of growth rates were known. Productivity for all fishes with a standing stock of 26.2 g m⁻² was calculated at 4.5 g m⁻² month01 Rhabdosargus holubi accounted for more than 75% of the total marine fish productivity. This study draws attention to the success of Rhabdosargus holubi in the East Kleinemonde estuary, which is ascribed to aspects of its biology. These include an extended breeding season, the ability to recruit into the estuary under adverse open mouth conditions and its omnivorous food habits. The dominance of this migratory species suggests that it plays an important role in the transfer of energy to the coastal marine environment when the mouth of the East Kleinemonde estuary opens. Predation by birds and a dominant piscivorous fish (Lichia amia) was quantitatively assessed over a period of two years. Monthly food consumption by all piscivorous birds revealed large temporal variability, ranging from 32 to 466 kg month-I An unusual invasion of Cape cormorants during the winter of 1994 accounted for large scale mortality (2246 kg of fish) over a relatively short period. The predatory impact of this episodic event was reflected in the findings of the fish mark-recapture experiments, which revealed a 70% reduction in the total population of marine-spawning fishes (above a certain minimum size) in the estuary subsequent to this invasion. Monthly food consumption by the Lichia amia population in the estuary was calculated at 68 and 58 kg month-I for two distinct time periods when the population size was known. These findings suggest that this species is the top piscivorous predator in the East Kleinemonde estuary. Finally, the findings of this study highlight the temporal variability of fish populations within a single estuary. It is suggested that predation and estuary mouth conditions are the main factors influencing the abundance (and its variability) of individual species in the East Kleinemonde estuary.

This thesis develops the first open population model for any shark species worldwide using the Cormack-Jolly-Seber (CJS) model. In conjunction with a tagging study, five auxiliary studies were conducted to investigate stock structure, post-release mortality, tag shedding, and tag-reporting rates. The results from each of the studies were used to correct for any violations of the models assumptions to provide the first unbiased estimates of survival and abundance for the raggedtooth shark (Carcharias taurus) in South Africa. The C. taurus population exhibited complex stock structuring, by size and sex. Competitive shore anglers fished an estimated 37, 820 fishing days.year⁻¹ (95% C.I. = 28, 281 - 47, 359 days.year⁻¹) for sharks, and caught 1764 (95% C.I. = 321 – 3207) C. taurus. Although released alive, post-release mortality ranged from 3.85% for young-of-the-year sharks to 18.46% for adult sharks. Between 1984 and 2004, a total of 3471 C. taurus were tagged. In all, 302-tagged sharks (8.7%) were recaptured. Both juvenile (< 1.8 m TL) and adult sharks (> 1.8 m TL) displayed philopatric behaviour for specific parts of their ranges, including gestating and parturition areas. Significant differences were observed in the percentage of recaptures between the different tag types, tagging programs, individual taggers and capture methods used to tag sharks. The annual tag retention rate for juvenile sharks, 94.19% (95% C.I. = 80.68% - 100.00%) was significantly higher than for adult sharks, estimated at 29.00% (95% C.I. = 6.76% - 64.39%). Tag reporting rates, from fishermen varied both spatially and temporally from 0.28 (95% C.I. = 0.00 – 0.63) to 0.77 (95% C.I. = 0.56 – 0.97). Associated tag wound damage and biofouling growth indicated that B-type tags were a suitable tag type for use on C. taurus, whereas C-type tags were not. The CJS bias-adjusted estimate for juvenile survival was 0.456 (95% C.I. = 0.367 – 0.516) and for adult sharks, 0.865 (95% C.I. = 0.795 – 0.915). From 1984 to 2004 the mean bias-adjusted population size for juvenile sharks was estimated at 3506 (95% C.I. = 2433 – 4350) and for adult sharks, 5899 (95% C.I. = 7216 – 11904). Trends in abundance over the 20-year study period indicated a stable, healthy population.

M.Sc. (Zoology) / Please refer to full text to view abstract

Poenskop Cymatoceps nasutus (Pisces: Sparidae), an endemic South African sparid, is an important angling species being predominantly targeted by the recreational shore and skiboat sector. This species is slow-growing, long-lived, late-maturing and sex-changing, making poenskop acutely sensitive to over-exploitation. Despite interventions, such as the imposition of size and bag limits (currently 50 cm TL and one per licensed fisher per day) by authorities, catch-per-unit-effort trends reflect a severe and consistent stock decline over the last two decades. Poenskop has been identified as a priority species for research and conservation. Although the biology and population dynamics of this species have been well-documented, little is known about the movement behaviour of poenskop. Furthermore, there is a complete lack of information on its genetic stock structure. This thesis aimed to address the current knowledge gaps concerning movement behaviour and genetic stock structure of poenskop, making use of a range of methods and drawing on available information, including available fishery records as well as published and unpublished survey and research data, and data from long-term monitoring programmes. Analysis of available catch data (published and unpublished) revealed a decline in the number of poenskop caught as well as size of fish taken over the last two decades, ultimately reflecting the collapse of the stock (estimated to be at 20% of their pristine level). Improved catch-per-unit-effort data from the Tsitsikamma National Park Marine Protected Area (MPA), and larger poenskop being caught in the no-take areas than adjacent exploited areas of the Pondoland MPA confirmed that MPAs can be effective for the protection and management of poenskop. The current MPA network in South Africa is already wellestablished, and encompasses considerable reef areas, being preferable for poenskop habitation. Conventional dart tagging and recapture information from three ongoing, long-term fishtagging projects, conducted throughout the poenskop’s distribution, indicated high levels of residency at all life-history stages. Coastal region, seasonality and time at recapture did not appear to have a significant effect on the level of movement or distance moved. However, on examining the relationship among coastal movements and fish size and ages, larger and older fish (adults) moved greater distances, with juveniles and sub-adults showing high degrees of residency. An estimation of home-range size indicated smaller poenskop to hold smaller home-ranges, while larger poenskop hold larger home-ranges. Large easterly displacements of a number of adult poenskop is in accordance with previous findings that this species may undertake a unidirectional migration up the coastline of South Africa where they possibly settle in Transkei waters for the remainder of their lives. This high level of residency makes poenskop vulnerable to localised depletion, although they can be effectively protected by suitable MPAs. Despite considerable tagging effort along the South African coastline (2 704 poenskop tagged with 189 recaptures, between 1984 and 2010), there remains limited information on the connectivity of different regions along the South African coastline. This was addressed using mitochondrial DNA sequencing. The mitochondrial DNA control region was used due to its high substitution rate, haploid nature, maternal inheritance and absence of recombination. The mtDNA sequencing showed no evidence of major geographic barriers to gene flow in this species. Samples collected throughout the core distribution of poenskop showed high genetic diversity (h = 0.88, π = 0.01), low genetic differentiation among regions, no spatial structure (ɸST = 0.012, p = 0.208) and no evidence of isolation by distance. The collapsed stock status of poenskop as well as the fact that it is being actively targeted by recreational and commercial fishers suggests that this species requires improved management, with consideration given to its life-history style, residency and poor conservation status. Management recommendations for poenskop, combined with increasing South Africa’s existing MPA network, include the possibility of setting up a closed season (during known spawning periods) as well as the decommercialisation of this species. The techniques used and developed in this study can also be adopted for other overexploited linefish species.

Thesis (MSc)--University of Stellenbosch, 2002. / ENGLISH ABSTRACT: In this study, the Fish Assemblage Integrity Index (FAll) was applied on three rivers within the southwestern Cape. This index uses fish as indicators of biological aquatic integrity and is based on indigenous species expected to be present in biological fish habitats. Fish integrity classes were calculated for each of the sites in the three rivers studied. Sites 2 and 4 within the Lourens River were rated as Class C, whereas sites 1 and 3 were rated as Class F and Class D respectively. Sites 1, 2 and 4 within the Palmiet River were rated Class F, whereas sites 3 and 5 were rated as Class E and Class D respectively. Site 1 within the Hout Bay River was rated as a Class F site, in addition to sites 2 and 3 been rated as Class A. It is however, suggested that the FAll needs to be adjusted to accommodate the general low species richness experienced in the southwestern Cape. In addition to the FAll been applied, the effects of long-term exposure to subtle water quality changes associated with human activities, specifically potential estrogenic compounds in fish from the Lourens River were also investigated. The production of the yolk precursor lipoprotein complex, vitellogenin (Vtg) produced in the liver under estrogen control was employed as biomarker for environmental estrogen exposure. Male fish from the Lourens River were studied using SDS-PAGE gel electrophoresis. Results indicated that 60% of male fish showed the presence of Vtg in their plasma. Abnormal gonad morphology in male and female fish were also assessed using standard histological procedures. Results from this study indicated no observed abnormalities in either male or female gonads. The immediate presence of endocrine disrupters with estrogen activity was investigated by screening water samples from the Lourens, Palmiet and Hout Bay Rivers for estrogen activity. Results indicated that none of the samples appeared to be cytotoxic. In addition, estrogen activity of water samples was also investigated by in vitro culturing of water samples with frog, Xenopus laevis, liver slices. Results indicated that none of the water samples from the three rivers studied indicated estrogenic activity. Although cytotoxicity and estrogen activity results were negative, the production of Vtg in male fish suggests further research regarding the presence of estrogenic substances in these rivers. / AFRIKAANSE OPSOMMING: In die huidige studie is die 'Fish Assemblage Integrity Index' (FAIl) toegepas op drie rivere in die suidwes Kaap. Hierdie indeks gebruik visse as bioindikatore van biologies akwatiese integriteit en is gebasseer op die inheemse visspesies wat verwag word in biologiese vishabitatte. Integriteitsklasse is bepaal vir elke studieterrein in die drie rivere wat ondersoek is. 'n Klas C is bepaal vir studieterreine 2 en 4 in die Lourensrivier. Klas F en Klas D is bepaal vir studieterreine 1 en 3 in die rivier onderskeidelik. 'n Klas F is bepaal vir studieterreine 1, 2 en 4 en Klas E en Klas D bepaal vir studieterreine 3 en 5 in die Palmietrivier onderskeidelik. 'n Klas F is bepaal vir studieterrein 1 in die Houtbaairivier waar 'n Klas A bepaal is vir studieterreine 2 en 3. Dit word egter voorgestel dat die FAII aangepas moet word om die algemene lae spesierykheid wat ervaar word in die suidwes Kaap te akkomodeer. Die reaksie van visse, afkomstig van die Lourensrivier, op die langtermyn blootstelling aan estrogeniese stowwe is ook bestudeer. Spesifieke reaksies van endokriene versteuring, soos vitellogeen (Vtg) produksie in manlike visse is ondersoek deur middel van SDS-PAGE gel elektroforese. Resultate toon dat in 60% van die manlike visse Vtg in die plasma teenwoordig was. 'n Ondersoek na abnormale gonade morfologie in manlike en vroulike visse van die Lourensrivier is deur standard histologiese prosedures gedoen. Resultate hiervan dui op geen sigbare abnormaliteite in die gonades nie. Die onmiddelike teenwoordigheid van endokriene versteurders is bestudeer deur die sitotoksisiteit van watermonsters afkomstig van die Lourens, Palmiet en Houtbaai riviere te bepaal. Resultate dui aan dat geen monsters sitotoksies was nie. Die estrogeenaktiwiteit van die watermonsters is ook ondersoek deur van in vitro kulture van watermonsters saam met padda, Xenopus leavis, lewersnitte gebruik te maak. Geen estrogeniese aktiwiteit is in die watermonsters gevind nie. Al is die sitotoksisiteit en estrogeenaktiwiteit resultate negatief, dui die produksie van Vtg in manlike visse op die noodsaaklikheid van verdere navorsing ten opsigte van die teenwoordigheid van estrogeniese stowwe in drie riviere.

The ichthyofaunal community structure, population dynamics and movement patterns in the small temporarily open/closed (TOCE) Grant’s Valley estuary, situated along the Eastern Cape coastline, were investigated over the period May 2004 to April 2005. Community structure in the littoral zone was assessed, while growth of selected ichthyofaunal species was investigated using the MULTIFAN model. Population size was assessed using mark recapture models and movement within the estuary using the Hilborn (1990) model. Total ichthyofaunal densities and biomass within the littoral zone ranged between 0.31 to 21.45 fish m⁻² and 0.20 to 4.67 g wwt m⁻², with the highest values typically recorded during the summer. Results of the study indicated that the ichthyofaunal community structure within the estuary was closely linked to the mouth phase and the establishment of a link to the marine environment via overtopping events. In the absence of any link to the sea, the ichthyofaunal community was numerically dominated by estuarine resident species, mainly Gilchristella aestuaria and to a lesser extent, by the river goby, Glossogobius callidus which collectively comprised ca. 88% of all fish sampled. The establishment of the link to the marine environment contributed to an increased contribution of marine breeding species (e.g. Rhabdosargus holubi, Myxus capensis and Atherina breviceps) to the total ichthyofaunal abundances. In contrast, total ichthyofaunal biomass was almost always dominated by marine breeding species by virtue of their larger sizes. Results of hierarchical cluster analyses did not identify any spatial patterns in the ichthyofaunal community within the littoral zone. Results of MULTIFAN analysis indicated estuarine resident fish species bred over an extended period with peaks occurring in the summer months. Conversely, marine breeding fish were shown to recruit into the estuary following overtopping and breaching events. Results of the mark-recapture experiment indicated a population of ca. 12 000 (11 219 – 13 311) individuals greater than 50mm SL. Marine-breeding species (R. holubi, Monodactylus falciformis, and two mullet species) numerically dominated the ichthyofauna, possibly as a result of their effective use of overtopping events. The two mullet species, M. capensis and Liza richardsonii, and the Cape stumpnose, R. holubi moved extensively throughout the estuary, while the remaining species exhibited restricted movement patterns possibly due to the preference for refuge and foraging areas associated with reed beds. The observed movement patterns of individual fish species appeared to be associated with both foraging behaviour and habitat selection.