Allopatric populations of Pseudocrenilabrus philander were found to differ in male breeding coloration. These colours are described and attention is drawn to the possibility that male coloration might prevent population hybridisation. Behaviour of the allopatric populations was studied in the laboratory. The execution of behaviour patterns of the various populations was found to be indistinguishable, and very similar to that of Haplochromis. Behaviour of P. philander was recorded in three morphologically different natural water bodies. Diurnal activities were found to follow a set rhythm. Though P. philander was shown to have adapted to a variety of habitats they retained their behavioural Components in an unchanged form. Field and laboratory observations are used to propose a behavioural mechanism for the natural regulation of population density. Although aggression between conspecific territorial Sarot herodon mossambicus habituated so that neighbours could live close to one another, it was found that P.philander are intolerant of their neighbours and are consequently forced apart. Though the execution of behaviour patterns was apparently identical for all populations of P. philander, field observations indicated that the frequency of performance differed. An experimental procedure was established to quantitatively compare the behaviour of various populations. As a result of comparative and choice chamber investigations, it is suggested that one of the four populations of P. philander would be unlikely to hybridise with the others if they were to become sympatric. These popUlations would be kept apart because of colour and behavioural differences. Differences of egg-size, fry-size, developmental and interbrood periods were also found, providing further evidence of incipient speciation. Evolutionary divergence of the allopatric populations of P. philander is discussed against a background of geological and geographical evidence. Consideration is given to the role of male coloration, ethological barriers and the importance of ethological differences to taxonomy. Behavioural evidence suggests that P. philander has closer affinities with the haplochromids than was initially realised. It is concluded that the clinal populations of P. philander should not be taxonomically separated, and it is argued that it would be premature to give the Kuruman population an elevated taxonomic status.

A detailed investigation into the life histories of Chrysoblephus laticeps and c. cristiceps in exploited and unexploited marine environments on the south-east coast of southern Africa is presented. The study provided information necessary for the evaluation of marine reserves as a management option for these and similar reef species. Visual underwater assessments showed a clear spatial separation between adults and juveniles of both species, suggesting a recruitment of juveniles into shallow water followed by a gradual outward migration into deeper water with age. Denslty estlmates of C. laticeps in the Noordhoek (0.0064 fish/m²) and Tsitslkamma (0.0254 fish/m²) areas were significantly different and were attributed to exploitation. Within area differences in density were also significantly correlated with temperature) depth and substratum relief. Similar comparisons for C. cristiceps were not possible because these fish shied away from divers. Habitat preferences were mirrored in the diets of both species which fed on a wide variety of reef associated benthic animals. Size of prey appeared to be gape limited, only larger fish being able to manipulate prey. Quantitative differences between the diets of fish sampled in different areas were a reflection of differences in available prey and not related to the relative density of predators. The dietary characteristics recorded in these fish were typical of search hunters. An age and growth study based on the examination of sectioned otoliths showed that both species were slow growing and long lived. Maximum recorded ages were 18 and 22 years for C. laticeps and C. cristiceps respectively. Growth rates in exploited and unexploited areas were not significantly different although there was an indication that growth was slower in the exploited areas for C. cristiceps. Several inconsistencies in otolith interpretation and terminology were evaluated. Contrary to other South African studies the results suggested that somatic growth was fastest just after spawning. This coincided with the winter months and was reflected by the deposition of a hyaline zone in the otolith. Two independent estimates, the Pauli derivation and visually assessed length frequency analysis, produced the same value for total mortality of C. laticeps in the Tsitsikamma area (0.2). This result, together with a significant difference in the rate of fishing mortality at different areas along the coast suggested that the populations sampled were discrete and supported the postulate that both species were sedentary. Further support was obtained from a mark-recapture study. Although sample numbers were low the results showed no evidence of large scale migratory patterns in these fish. An investigation of the reproductive biology of both fish showed that they were protogynous hermaphrodites, all males being derived from females with no evidence for polyandry. Males were shown to be capable of mating with a number of females and this, together with monandry, monochromatism and a small testis size, suggested a polygynous mating system in both species. Observations of the courtship behaviour in captive c. laticeps also supported polygyny. A significant difference in the mean size at sex reversal between unexploited and exploited populations supported the postulate that sex reversal was independent of the size or age of the animal. The size at which sex reversal occurred appeared to be dependent on sex ratio. A detailed yield per recruit analysis of the response of the population to different levels of fishing mortality and size at recruitment (t [subscript]r), showed that sex reversing species were particularly vulnerable to over fishing. This was due to a dramatic decline in the number of surviving individuals past t[subscript]r which resulted in a skewing of the sex ratio towards females. Evidence is presented to show that current legislation is inadequately protecting the spawner stock of both species. In conclusion it is shown that longevity, sex reversal, restricted movements and the occupation of a demersal habitat make these species particularly vulnerable to over exploitation in a size- selective fishery. The sustained yield in the linefishery is suggested to be a result of distant recruitment from relatively unexploited populations rather than the adequacy of current conservation measures. The need to protect the spawner stock is emphasised and the use of marine reserves as an additional protection for sedentary reef-dwelling species is therefore advocated.

A Geographic Information Systems (GIS) atlas of southern African freshwater fish was developed for the SADC countries from natural history collection specimens, hydrological, topographical and climatological data. The primary purpose of the development of the atlas of freshwater fish was the construction of a practical framework to transform vast amounts of existing biological data for use in research and management of aquatic resources. The database of freshwater fish collection specimens that was incorporated into the atlas, was developed in association with ALCOM (Aquatic Resources Management for Local Community Development Programme). The development of advanced computing and GIS technology has increased the scope of biological atlas projects by facilitating the integration of large amounts of spatial data to produce derived databases for specific applications. The atlas of freshwater fish was constructed using TNTmips GIS software as the most practical system available for managing and analysing biological data with a spatial component. The atlas contains 35 180 comprehensive distribution records of 735 species of fish. It has many applications as an inventory of ichthyofaunal spatial biodiversity, including those of conservation planning, environmental assessment and biogeographic research. Biogeographic studies have traditionally been subjective due to the logistical problems of working with large amounts of distribution data, although some small-scale quantitative research has been carried out in the past. The content of the atlas of freshwater fish is tested with respect to these previous studies, on known patterns of freshwater fish distributions, and the analytical capability of the atlas is tested and demonstrated with some new preliminary approaches to the analysis of freshwater fish distributions in southern Africa.

This study assessed the importance of overwash and breaching events on the ichthyofaunal community structure in the medium-sized temporarily open/closed Mpekweni Estuary located on the southeast coastline of southern Africa. The fish in the littoral zone of the estuary were sampled using a 5m seine net while the channel region was sampled using two nets, a smaller meshed 30m seine net to target the estuarine spawning species and the juvenile estuarine-dependant marine spawners, and a larger meshed 50m seine net to target the larger marine and freshwater spawning species. Intensive monthly sampling over two years provided data on selected physico-chemical and biological parameters. During the two year sampling period from November 2005 to October 2007 the estuary breached in late July 2006 and remained open till the sandbar re-formed across the mouth in late December 2006. Thus, sampling encompassed three open/closed phases 1) initial closed period, 2) open period and 3) re-closed period after the berm was re-formed. The open period was divided into two phases 1) the out-flow phase and 2) the tidal phase. A total of 36 fish species representing 19 families were sampled using the various seine nets employed during the investigation. In the littoral zone, the estuarine spawners (Estuarine Utilisation Category, [EUC] I), mainly the Gobiidae, Glossogobius callidus, dominated the samples numerically and by biomass. The smaller estuarine spawning species sampled in the channel were numerically dominated by Gilchristella aestuaria in conjunction with two other EUC I species, Atherina breviceps and G. callidus. The estuarine-dependant marine spawners (EUC II), however, dominated the ichthyofaunal biomass of the channel. The abundance and biomass of the larger species targeted were dominated by estuarine-dependant marine spawning species (EUC II), principally Rhabdosargus holubi. During the closed periods of the estuary, total fish abundance and biomass displayed weak seasonal patterns. The breaching event and subsequent open period was associated with a decrease in the total abundances of fish in the littoral zone and channel of the estuary, reflecting the out-flow of estuarine biomass-rich water into the marine environment. The breaching event coincided with a shift in the community composition of the ichthyofauna, reflecting the recruitment of marine spawning species into the estuary. Numerical analysis identified two distinct spatial fish communities within the estuary, a community associated with the mouth region and one comprising the rest of the estuary. The absence of any further spatial patterns in the ichthyofaunal community structure within the Mpekweni Estuary appear to be ascribed to the virtual absence of horizontal patterns in physico-chemical and biological parameters recorded in the system. Cohort analyses were employed to determine possible recruitment events for selected estuarine and marine spawning species. The estuarine spawning species displayed continuous recruitment patterns throughout the study, which appeared to be unaffected by the breaching event. Conversely, the larger marine spawning species displayed multiple cohorts, indicating non-continuous recruitment. Subsequent retrospective analysis of cohorts for the different species identified summer recruitment peaks that coincided with the breaching event and open period. Minor recruitment of marine spawning species also occurred during overwash events. The recruitment of ichthyofauna into the estuary was quantified during three distinct hydrological events: overwash, out-flow phase immediately after breaching and tidal phase during the period when the mouth was open. Estimates of fish recruitment were highest during the outflow phase immediately after the estuary breached and declined as the estuary became tidally inundated with marine water. Although not as high as the outflow and tidal phases, recruitment was evident during overwash events. Results of the current study highlight the importance of both breaching and overwashing events in structuring the ichthyofaunal community composition in a medium-sized southern African temporarily open/closed estuary. These results are broadly in agreement with similar studies conducted both locally and in other regions of the world.

The fish populations in small southern African reservoirs are largely unexploited and there is potential for fisheries development. However, the development of sustainable fisheries requires reliable estimates of potential yield or production. Empirical models that have been developed to predict fish production only apply to large water bodies and only predict total fish production, not the production of individual species. Small reservoirs generally have few commercially important species and therefore species-specific fish production models are an alternative approach. The small reservoirs of the Eastern Cape are dominated by the moggel (Labeo umbratus). The principal objectives of this thesis were to gain an understanding of the ecology of small reservoirs and the function of moggel in these systems. This information was used to design a research approach to rapidly develop species-specific models for small reservoirs in southern Africa. The limnology of two small reservoirs was compared. During the study period the reservoirs were turbid and showed a warm, monomictic pattern of thermal stratification. Anthropogenic pressure in the reservoir catchments appeared to be the overriding factor increasing the nutrient input to the reservoirs and consequently, influencing the biomass of algae in the reservoirs. The feeding biology of moggel in Katriver and Laing reservoirs was examined. Moggel are detrivorous and successfully digested diatoms. The slower growth rate of moggel in Katriver reservoir was attributed to the poorer nutritional value of the diet as a consequence of the lower concentration of diatoms in the detrital aggregate. The reproductive characteristics of moggel were examined in four reservoirs. Moggel were able to reproduce successfully in the reservoirs. This could be attributed to their r-selected reproductive strategy, with a high fecundity and an extended spawning season and their ability to spawn in a floodplain environment. Differences in recruitment success between years were found to be a consequence of the timing and duration of seasonal rains. The number of mature females in a population and the availability of suitable spawning habitat influenced recruitment success. The life history of the moggel in five reservoirs was compared. Growth appeared to be related to food availability, while mortality was lower in the populations where food was abundant and there were less predatory species. Size and age at maturity were not affected by environmental factors, but were dependent on growth and mortality. Three contrasting methods were used to estimate moggel gillnet selectivity. The Sechin, direct fyke net method and length-structured model all yielded similar results and correction factors obtained from the selectivity study were applied to the gillnet data to estimate the fish population size and structure in each reservoir. Using information from the life history and selectivity studies, the biomass and production of five moggel populations was estimated and related to abiotic and biotic factors in the reservoirs and their catchments. Moggel biomass and production was dependent on the biomass of algae, which was dependent on morphoedaphic characteristics of the reservoirs. Small, shallow reservoirs with a reasonable amount of human habitation in their catchments would sustain the highest algal biomass and provided they had adequate spawning habitat would also have the highest moggel biomass and production. The future research requirements for small reservoir fisheries are outlined and include a three-year program to develop a species-specific production model for any of the dominant species.

This study conducted the first high-resolution investigation of the ichthyofaunal assemblages on a high-latitude coral reef in the Western Indian Ocean (WIO). Two-Mile reef, in South Africa, is a large, accessible patch-reef, and was selected as a candidate study area. Although the effect of season in structuring coral reef fish communities is most-often overlooked, the relationship between these fish communities and their habitat structure has been investigated. In South Africa, however, neither of these potential community-level drivers has been explored. As coral reefs worldwide are faced with high levels of usage pressure, nondestructive underwater visual census (UVC) techniques were identified as the most appropriate survey methods. This study had two primary aims that were; (1) to identify the most suitable technique for the UVC of coral reef fishes, and to test variations of the selected technique for appropriateness to implementation in long-term monitoring programs, and (2) to determine if possible changes to ichthyofaunal community structure could be related to trends in season and/or habitat characteristics. A review of the literature indicated that the most appropriate UVC method for surveying epibenthic coral reef fishes is underwater transecting. To compare the traditional slate-based transects to variations that implement digital image technology, slate transects were compared to a first-attempt digital photographic transect technique, and digital videographic transects. Videographic transects produced the most favourable species richness, abundance, and standard deviations of the three techniques. Diversity was not significantly different between transect techniques. The minimum required sample size was lowest for videographic transects (17 replicates), intermediate for photographic transects (27 replicates) and highest for slate transects (37 replicates). Videographic and photographic transects required greater analysis time to generate counts, but required lower observer training time. While videographic transects produced the lowest proportion of species considered unidentifiable, all three transect techniques showed similar functionality to surveying epibenthic coral reef fishes. Videographic transects were therefore identified as the most appropriate UVC technique for this study. Videographic transects at shallow (6 – 14 m), intermediate (14 – 22 m) and deep (22 – 30 m) depths in mid-winter and mid-summer, sampled a total of 41 families consisting of 209 species and 18172 individuals, dominated by pomacentrids in abundance and labrids in richness. The fish assemblages on Two-Mile Reef were found to be similar in composition to lower-latitude WIO reefs. Overall ichthyofaunal abundance and richness was significantly higher in summer than in winter, and was higher at shallow sites than at intermediate and deep sites. A multivariate approach confirmed differences between seasons at shallow depths but not between seasons at intermediate and deep depths. The fish assemblages on Two-Mile Reef can therefore be described as being comprised of four relatively distinct communities: a shallow, winter community; a shallow, summer community; a year-round intermediate community; and a year-round deep community. The distributions of discriminating species indicated that high abundances of the algal-feeding pomacentrids are observed only at shallow and intermediate sites while high abundances of the zooplanktivorous serranid subfamily, the Anthiinae, are observed predominantly at deep sites. Assessment of all measured supplementary variables indicated that of all factor combinations, observed patterns could be ascribed most strongly to depth. Quantification of reef characteristics indicated that as depth increases, habitat complexity decreases, benthic communities shift from dense coral domination to sparse sponge domination, and algal biomass and cover decreases. The ability of the videographic transect technique to detect changes in community structure with season and depth indicates that season and depth should be accounted for in future high-latitude ichtyofaunal surveys, and that the videographic transect technique is suitable for implementation in long-term monitoring programs on coral reefs. The similarity in fish assemblages between Two-Mile Reef and lower latitude regions suggests that the protocol for surveying epibenthic coral reef fishes, resulting from this study, is relevant throughout the continental WIO.