Spontaneous chlorate resistant mutants of Penicillium chrysogenum and Cephalosporium acremonium have been isolated. Putative genotypes of the P. chrysogenum mutants were identified using the phenotypic characterization of Cove (1979). This analysis was also attempted with C. acremonium, however it was found that the wild type organism could not grow on minimal media containing glucose and hypoxanthine and thus cnx and niaD mutants could not be differentiated using this method. Following the distinction of cnx and niaD mutants using cytochrome C reductase and purine hydroxylase I assays, a simple plate test using minimal media containing quinic acid as carbon source and inosine as nitrogen source was developed to analyse cnx and niaD mutants. Nonreverting (at less than 1 in 108) niaD mutants were isolated for later experiments. P. chrysogenum niaD mutant niaD19 was transformed to nitrate utilization at a frequency of up to 20 transformants/mug DNA using the Aspergillus nidulans niaD gene, up to nine/mug DNA with the A. niger niaD gene and up to three/mug DNA using the A. oryzae niaD gene. Vector constructs carrying the A. nidulans ans-1 sequence with the A niger niaD gene did not show increased transformation efficiency. Linearization of the A. niger niaD containing plasmid resulted in a two to three times increase in transformation frequency. Southern blot hybridization analysis demonstrated that vector sequences had integrated into the recipient genome. The control of heterologous niaD gene expression generally agreed with that found in the wild type strain, that is, induction by nitrate and repression in the presence of ammonium. The A. nidulans, A. niger and A. oryzae genes failed to transform C. acremonium niaD mutants. A DNA fragment containing the C. acremonium niaD gene was isolated by cross hybridization to the A. nidulans niaD gene. This fragment was sub-cloned into pUC18 (designated pSTA700), and showed back hybridization to C. acremonium wild type DNA exhibiting the expected hybridization pattern. When partially sequenced, it showed nucleotide and determined amino acid homology to the A. nidulans niaD gene and protein. The clone pSTA700 transformed a C. acremonium niaD mutant, CSG116 and P. chrysogenum STP19 to nitrate utilization at a frequency of up to 47 and six transformants/mug DNA, respectively. When heat shock was applied to C. acremonium protoplasts 10mins prior to the addition of DNA, transformation frequencies of up to 137/mug DNA were obtained. Southern analysis of transformants revealed multiple integration of vector sequences, with no detectable preference for the homologous niaD site. Some C. acremonium transformants showed a greatly increased nitrate reductase activity (up to 10 times wild type activity) when induced with nitrate. The niaD transformation system was successfully used to introduce unselected markers into C. acremonium such as hygromycin B and benomyl resistance. The co-transformation frequency was up to 25% when equal molar ratios of plasmids were used. Antibiotic biosynthetic genes isolated from C. acremonium (pcbC and cefEF) and A. nidulans (pcbC and penE) were introduced into C. acremonium CSG116 by co-transformation with the C. acremonium niaD gene or the construction of vectors containing both the C. acremonium niaD gene and antibiotic biosynthetic genes. Isolates transformed with the C. acremonium pcbC and cefEF genes exhibited an increase in antibacterial activity (greater than 20% compared to wild type) at frequencies of up to 10% and six percent of transformants, respectively. When A. nidulans constructs containing the pcbC and penE genes, but not the pcbC gene alone, were co-transformed into C. acremonium, up to 18% of transformants exhibited an increase in antibacterial activity. The presence of penicillin antibiotics could not be found in these transformants and thus the exact cause of this increase in antibacterial activity could not be determined.

Management improvements have caused a decline in plant species diversity in traditionally managed haymeadows. The aim of this study was examine the effects and causes of management improvements on the soil microbialocmmunity with particular emphasis on the fungal component. A seasonal study of 3 sites showed that management improvements to haymeadows consistently reduced soil microbial biomass C, but had no effect on dehydrogenase activity and basal respiration. Management improvements to these sites also caused a significant reduction in VAM spore numbers, soil fungal biomass, measured as soil ergosterol content and the PLFA 18:w6, and a decrease in the fungal:bacteria PLFA ratio. VAM spore numbers were not correlated with the possibly mycorrhizal NLFA 16:w5. In the Welsh haymeadow, fungi of the genera Fusarium, Mucor, Absidia, Cladosporium, Trichodenna, Acremonium, Zygorhynchus and Paecilomyces were commonly isolated on litter and soil. Commonly isolated fungi had proteolytic and urease activity, and approximately half had cellulose and lignin decay abilities. Management improvements induced shifts in the isolation frequency of these fungi, resulting in an increase in more general resource fungi, capable of growth on both litter and soil. Management improvements to haymeadows, may also have reduced species diversity of litter fungi. Agar and microcosm experiments established that changes in fungal community structure observed in the field could be in response to changes in plant litter inputs and applications of NPK fertiliser. Pairings of fungi on PDA showed that there was a combative hierarchy amongst the fungi, but was not able to show if this hierarchy was affected by NPK. A field experiment found no response of the soil microbial community to short term applications (2 years) of fertiliser or fungicide. The findings of this study suggest that management improvements to grasslands will induce changes in microbial and fungal community structure, this will be discussed.

published_or_final_version / Ecology and Biodiversity / Doctoral / Doctor of Philosophy

Thesis (Ph. D.)--University of Hong Kong, 1998. / Includes bibliographical references (leaves 203-225).

Filamentous fungal colonies show a remarkable diversity of different mycelial branching patterns. To date, the characterization of this biostructural complexity has been based on subjective descriptions. Here, computerized image analysis in conjunction with video microscopy has been used to quantify several aspects of fungal growth and differentiation. This was accomplished by applying the new branch of mathematics called Fractal Geometry to this biological system, to provide an objective description of morphological and biochemical complexity. The fractal dimension is useful for describing irregularity and shape complexity in systems that appear to display scaling correlations (between structural units) over several orders of length or size. The branching dynamics of Pycnoporus cinnabarinus have been evaluated using fractals in order to determine whether there was a correlation between branching complexity and the amount of extracellular phenol-oxidase that accumulated during growth. A non-linear branching response was observed when colonies were grown in the presence of the aminoanthraquinone dye, Remazol Brilliant Blue R. Branching complexity could be used to predict the generalized yield of phenol-oxidase that accumulated in submerged culture, or identify paramorphogens that could be used to improve yield. A method to optimize growth of discrete fungal colonies for microscopy and image analysis on microporous membranes revealed secretion sites of the phenoloxidase, laccase as well as the intracellular enzyme, acid phosphatase. This method was further improved using microwave-accelerated heating to detect tip and sheath bound enzyme. The spatial deposition of secreted laccase and acid phosphatase displayed antipersistent scaling in deposition and/or secretion pattern. To overcome inherent statistical limitations of existing methods, a new signal processing tool, called wavelets were applied to analyze both one and two-dimensional data to measure fractal scaling. Two-dimensional wavelet packet analysis (2-d WPA) measured the (i) mass fractal dimension of binary images, or the (ii) self-affine dimension of grey-scale images. Both 1- and 2-d WPA showed comparative accuracy with existing methods yet offered improvements in computational efficiency that were inherent with this multiresolution technique. The fractal dimension was shown to be a sensitive indicator of shape complexity. The discovery of power law scaling was a hallmark of fractal geometry and in many cases returned values that were indicative of a self-organized critical state. This meant that the dynamics of fungal colony branching equilibrium. Hence there was potential for biostructural changes of all sizes, which would allow the system to efficiently adapt to environmental change at both the macro and micro levels.

L'opinione pubblica percepisce fortemente il rischio derivante da sostanze chimiche sintetiche, ma ignora spesso quello derivante dalla presenza di sostanze tossiche naturali. Tra queste sostanze vengono classificate le micotossine; prodotti del metabolismo secondario di alcuni funghi. La maggior parte degli alimenti di origine vegetale e in particolare i cereali, possono andare incontro a contaminazione da parte di questi funghi, produttori di micotossine, in qualunque stadio. In particolare nel frumento le micotossine che si riscontrano più frequentemente sono l'ocratossina A (OTA) e il deossinivalenolo (DON), mentre nel mais, si riscontrano le Aflatossine e le fumonisine. Queste micotossine hanno effetti epatotossici, nefrotossici, mutageni e cancerogeni, è necessario perciò, un continuo monitoraggio della materia prima (frumento e mais), ma anche dei prodotti destinati all'alimentazione umana a base di questi cereali. / People experience deeply, the risk of synthetics chemicals substances, but often don't know the risk from naturals toxics substances. Between these substances, they are mycotoxins; fungi secondary metabolism's products. Most of vegetable food, as cereals, can suffer a mycotoxins contamination, for effect of these fungi, during any step of alimentary chain. In particular, in wheat , the mycotoxins more frequents are ochratoxin A end deossinivalenol, while in the maize can find aflatoxins and fumonisins. These mycotoxins can have hepatotoxics, nefrotoxics, mutagens and cancerogens effects. This study has monitored contamination's levels of raw material (wheat and maize), but also of foodstuff containing cereals.

Bostrychia tenella, proveniente dos costões rochosos da Praia Dura, no Estado de São Paulo. Para atingir este objetivo, foram realizados culturas isoladas dos microrganismos e a co-cultura entre o fungo T68 e a cianobactéria CENA139; técnicas de extração por partição volume/volume; métodos cromatográficos como cromatografia em camada delgada (CCD) e cromatografia líquida de alta eficiência (CLAE), bem como técnicas espectroscópicas e espectrométricas de RMN 1-D e 2-D, CL-EM, CG-EM, além de desreplicação (utilizando o banco de dados MarinLit® e o Dicionário de Produtos Naturais. Foram isoladas três substâncias do fungo estudado: Esterigmatocistina, T68ARf60_a e T68ARf60_b. A micotoxina esterigmatocistina foi isolada também a partir da co-cultura entre o fungo e a cianobactéria. Este trabalho mostrou que houve interações ecológicas competitivas na cultura mista entre Cyanobium sp. CENA139 e o fungo T68, resultando na prevalência da cultura fúngica. Para finalizar, este trabalho avaliou a atividade biológica dos extratos brutos das culturas isoladas e co-cultura, não apresentando atividade antimicrobiana. Entretanto, o extrato bruto T68 mostrou-se fototóxico nos ensaios de fototoxicidade e a substância isolada esterigmatocistina foi citotóxica e fotoxóxica no mesmo ensaio, além de exercer citotoxicidade frente à linhagem tumoral HepG2 no ensaio de citotoxicidade MTT. / This study had as main objective the evaluation of the chemical and biological profiles of two strains of microorganisms, the cyanobacteria Cyanobium sp. CENA139, from Ilha do Cardoso mangroves, São Paulo State, and the endophytic fungus T68, Xylariaceae family, isolated from the red algae Bostrychia tenella, from the rocky shores at Praia Dura, São Paulo State. To accomplish this objective, we performed isolated cultures of the microorganisms and the co-culture between the fungus T68 and the cyanobacteria CENA139; partition extraction techniques; chromatographic methods such as thin layer chromatography and high performance liquid chromatography. Also, we performed spectroscopic and spectrometric techniques of NMR 1-D and 2-D, LC-MS, GC-MS, besides dereplication using data sources as MarinLit® and the Dictionary of Natural Products. Three compounds were isolated from the endophytic fungus culture: Sterigmatocystin, T68ARf60_a and T68ARf60_b. The mycotoxin sterigmatocystin was also isolated from the co-culture. This study showed that there was competitive ecological interactions between Cyanobium sp. CENA139 and the fungus T68 in the co-culture, resulting in the prevalence of the fungal culture. Finally, this study evaluated the biological potential of the crude extract from both isolated cultures and the co-culture, not exerting antimicrobial activity. Nevertheless, the T68 crude extract was shown to be phototoxic on the phototoxicity assays and the isolated sterigmatocystin was both cytotoxic and phototoxic in the same assay, besides exerting cytotoxicity on the tumor cell line HepG2 in the MTT assay.

Penicillium nordicum è un importante contaminante di salumi, rappresentanando il 10 % e il 26 % della popolazione di Penicillium spp . isolati , rispettivamente dall'aria e dai prodotti carnei stagionati in un'indagine gestita in Italia ( Battilani et al. , 2007). Diverse colonie di P. nordicum isolate dai salumi hanno dimostrato di essere importanti produttori di ocratossina A , OTA ( Sansom e Frisvad , 2004 . Pietri et al, 2006 ; . Battilani et al , 2010). Attualmente, l'impostazione appropriata delle condizioni ambientali (temperatura, umidità relativa e circolazione dell'aria ), è l'unico strumento accettato per impedire la crescita incontrollata di P. nordicum all'interno degli impianti di stagionatura attraverso una accurata analisi dei punti critici di controllo e l’ideazione di un relativo piano HACCP (Hazard Analysis and Critical Control Points) ben struttutato ( Asefa et al , 2011; Virgili et al , 2012). Anche se il sistema HACCP è stato applicato con successo nel settore alimentare ci sono rischi per la sicurezza alimentare non attentamente considerati. Questo è particolarmente vero per quanto riguarda i rischi micotossigeni associati ai prodotti alimentari di origine animale. Il termine "rischi micotossigeni" è utilizzato da Asefa et al. ( 2011) per descrivere lieviti patogeni e metaboliti secondari tossici prodotti da specie fungine tossigene che contaminano i prodotti alimentari e incidono sulla sicurezza alimentare. La maggior parte dei piani HACCP nelle attività di trasformazione alimentare, come ad esempio la produzione di formaggi e di prodotti carnei stagionati, tiene in considerazione principalmente il rischio derivante da agenti batterici (Arvanitoyannis e Mavropoulos, 2000; Barbuti e Parolari, 2002) anche se tali prodotti alimentari vengono spesso contaminati da funghi micotossigeni e dai loro metaboliti (Spotti et al 1989; Spotti et al , 2001a; Battilani et al 2007). Pertanto, dovrebbe essere cruciale definire un piano HACCP specificamente incentrato sui rischi micotossigeni. L'identificazione, il controllo e la standardizzazione della micoflora superficie dei salumi è fondamentale per preservare la sicurezza delle produzioni e la salute dei consumatori . Questo è il contesto in cui deve essere valutata l’efficacia e l’affidabilità per l’identificazione delle popolazioni di Penicillium spp di interessante per la produzione alimentare. In questo contesto , il progetto di ricerca di questa tesi di dottorato ha cercato di approfondire le conoscenze su tali tematiche con l'intento di limitare il rischio micotossigeno nella catena di produzione dei prodotti carnei stagionati. Sono stati affrontati i seguenti argomenti: 1 . studio della composizione e dinamica della microflora fungina presente sulla superficie dei salumi (prodotto testato, salame) e l'aria di ambienti di stagionatura tenendo conto dell'influenza di alcuni parametri di processo (inoculo starter, temperatura, fase produttiva). 2 . sviluppo di un metodo MALDI TOF MS per l'identificazione di Penicilium a livello di specie per le prospettive future di screening diretti della microflora presente sui salumi. 3 . confronto e integrazione di diverse tecniche, come l'analisi morfologica, l’analisi molecolare e l’analisi tramite spettrometria di massa, per l'identificazione delle specie di Penicillium presenti nei salumi. 4 . valutazione dei lieviti selezionati, isolati dalla superficie di prosciutto crudo, per competere con P. nordicum ed inibire l'accumulo di OTA nella prospettiva del loro uso come starter superficiali con funzione di agenti di biocontrollo. / Penicillium nordicum is an important contaminant of cured meat products, representing 10% and 26% of the Penicillium spp. isolated, respectively, from the air or the products in a survey managed in Italy (Battilani et al., 2007). Several P. nordicum cured meat isolates proved to be important producers of ochratoxin A, OTA (Sansom and Frisvad, 2004; Pietri et al., 2006; Battilani et al., 2010). Currently, the appropriate setting of environmental conditions (temperature, relative humidity and air circulation), is the only accepted tool to prevent the uncontrolled growth of P. nordicum inside dry-curing plants through a carefully structured Hazard Analysis Critical Control Point (HACCP) plan (Asefa et al., 2011; Virgili et al., 2012). Even if the HACCP system has been successfully applied in the food industry, there are food safety hazards not carefully considered. This is especially true with regard to mycotoxigenic hazards associated with animal food products. The term “mycotoxigenic hazards” is used by Asefa et al. (2011) to describe pathogenic yeasts and toxic secondary metabolites of toxigenic moulds that contaminate food products and affect food safety. Most HACCP plans in food processing activities, such as the production of cheese and dry-cured meat products, considered mainly bacterial agents (Arvanitoyannis and Mavropoulos, 2000; Barbuti and Parolari, 2002), even if such food products get often contaminated with mycotoxigenic fungi and their metabolites (Spotti et al 1989; Spotti et al., 2001a; Battilani et al 2007). Therefore, it should be crucial to define a HACCP plan specifically focused on the mycotoxigenic hazards. The identification, control and standardization of the surface mycoflora of cured meat products is mandatory to preserve the productions safety and the consumers health. This is the context of the effectiveness and reliability evaluation for the Penicillium spp. identification methods of interesting species for food production. In this context, the research project of this PHD thesis tried to fill some gaps of knowledge with the attempt to limit the mycotoxigenic risk in the cured meat products chain. The following topics were faced: 1. study of the composition and dynamic of fungal microflora present on the surface of cured meat products (salami) and the air of seasoning environments taking into account the influence of some process parameters (starter inoculum, curing temperature, stage of seasoning). 2. development of a MALDI TOF MS method for the identification of Penicilium at species level for future direct screening perspectives of the microflora present on cured meat products. 3. comparison and integration of different techniques, as morphological, molecular and mass spectral analysis, for the identification of Penicillium species in cured meat products. 4. evaluation of selected yeasts, isolated from dry-cured ham surface, to compete with P. nordicum and to inhibit OTA accumulation in the perspective of their use as surface starter biocontrol agents.