No description available.

Exceptionally preserved fossils—or fossils preserved with remains of originally non-biomineralized (i.e. soft) tissues—constitute a key resource for investigating the history of the biosphere. In comparison to fossils of biomineralized skeletal elements, which represent the majority of the fossil record but only a fraction of the total diversity that existed in the past, exceptionally preserved fossils are comparatively rare because soft tissues are rapidly destroyed in typical depositional environments. Assemblages of such fossils, nonetheless, have received special attention among scientists in multiple fields of Earth and life sciences because they represent relatively 'complete' windows to past life. Through such windows, researchers are able to reconstruct original biological features (e.g. soft tissue anatomies) of extinct organisms and to describe the structures and compositions of ancient soft-bodied paleocommunities. To accomplish these goals, however, researchers must incorporate background information regarding the pre- and post-burial histories of exceptionally preserved fossils. In this context, my dissertation focuses on the environmental settings, diagenetic conditions, geomicrobiological activities, and weathering processes, which influence the conservation of original biological features within exceptionally preserved fossils and control their occurrences in time and space. An improved understanding of these critical factors involved in exceptional fossil preservation will ultimately our advance our knowledge regarding the history of the biosphere and the Earth system as a whole. Each chapter of original research in this dissertation includes an innovative and distinct approach for studying exceptional fossil preservation. The second chapter describes environmental and geologic overprints in the exceptional fossil record, as revealed by a comprehensive statistical meta-analysis of a global dataset of exceptionally preserved fossil assemblages. Moving from global to specimen-based perspectives, the second and third chapters focus on minerals (products of geomicrobioloigcal, diagenetic, and weathering processes) and carbonaceous materials replicating exceptionally preserved fossils. The third chapter examines the causes of preservational variations observed among organophosphatic tubular shelly Sphenothallus fossils in the lower Cambrian of South China using an experimental approach. (Although Sphenothallus is not an exceptionally preserved fossil sensu stricto, its conservation of original organic matrix tissues in South China provides key insights into the preservation of carbonaceous material within fossils.) Lastly, the fourth chapter presents data acquired using various in situ nanoscale analytical techniques to test the hypothesis that microstructures within exceptionally preserved microfossils of the Ediacaran Doushantuo Formation of South China are some of the oldest putative cylindrical siliceous demosponge spicules in the fossil record. Collectively, these chapters describe environmental, authigenic, diagenetic, and weathering processes that affect exceptional fossil preservation, and highlight innovative methods and approaches for testing major paleobiologic and geobiologic hypotheses regarding exceptionally preserved fossils. / Ph. D.

The Ediacaran Period (635 – 541 Ma) is a critical transition in the history of the Earth and life. It is marked by the appearance of enigmatic Ediacara-like fossils and macroalgae, which had existed since the early Proterozoic, but started to diversify morphologically and ecologically during this geological period. Nevertheless, paleontologists have been studying Ediacaran fossils for more than a century, the key questions about these fossils remain unanswered, including their phylogenetic affinities, taphonomic history, ecology, and paleoenvironmental distribution. Thus, new ways of investigation need to be employed to unveil enigmas of Ediacaran organisms. As well as, scientists need to engage other representatives of Ediacaran assemblages, such as macroalgae, to fully understand how those communities operated in the past. The chapters of this original research in this dissertation demonstrate innovative approaches and methods for studying the paleoecology and taphonomy of Ediacaran macrofossils. The second chapter presents the results of a geochemical analysis to resolve taphonomic and paleoecological questions about the Ediacara-like discoidal holdfast fossil Aspidella. Stable isotope data of organic carbon, carbonate carbon/oxygen, and pyrite sulfur were integrated with iron speciation data to reconstruct the taphonomy, paleoecology, and paleoenvironments of Aspidella fossils. The third chapter presents results from a comprehensive analysis of macroalgae from Proterozoic to early Paleozoic. In this study, a database of macroalgal fossil was updated and analyzed in order to gain insights into the big-picture evolutionary patterns of macroalgal morphology and ecology through time. These methods and approaches offer new opportunities to test major paleobiologic and geobiologic hypotheses, thus improving our understanding of the history of the biosphere and the Earth system. / Ph. D.

Thesis (MS)--University of Montana, 2009. / Contents viewed on December 19, 2009. Title from author supplied metadata. Includes bibliographical references.

<p> Historical biogeography has a diversity of methods for inferring ancestral geographic ranges on phylogenies, but many of the methods have conflicting assumptions, and there is no common statistical framework by which to judge which models are preferable. Probabilistic modeling of geographic range evolution, pioneered by Ree and Smith (2008, <i>Systematic Biology</i>) in their program LAGRANGE, could provide such a framework, but this potential has not been implemented until now. </p><p> I have created an R package, "BioGeoBEARS," described in chapter 1 of the dissertation, that implements in a likelihood framework several commonly used models, such as the LAGRANGE Dispersal-Extinction-Cladogenesis (DEC) model and the Dispersal-Vicariance Analysis (DIVA, Ronquist 1997, <i> Systematic Biology</i>) model. Standard DEC is a model with two free parameters specifying the rate of "dispersal" (range expansion) and "extinction" (range contraction). However, while dispersal and extinction rates are free parameters, the cladogenesis model is fixed, such that the geographic range of the ancestral lineage is inherited by the two daughter lineages through a variety of scenarios fixed to have equal probability. This fixed nature of the cladogenesis model means that it has been indiscriminately applied in all DEC analyses, and has not been subjected to any inference or formal model testing. </p><p> BioGeoBEARS also adds a number of features not previously available in most historical biogeography software, such as distance-based dispersal, a model of imperfect detection, and the ability to include fossils either as ancestors or tips on a time-calibrated tree. </p><p> Several important conclusions may be drawn from this research. First, formal model selection procedures can be applied in phylogenetic inferences of historical biogeography, and the relative importance of different processes can be measured. These techniques have great potential for strengthening quantitative inference in historical biogeography. No longer are biogeographers forced to simply assume, consciously or not, that some processes (such as vicariance or dispersal) are important and others are not; instead, this can be inferred from the data. Second, founder-event speciation appears to be a crucial explanatory process in most clades, the only exception being some intracontinental taxa showing a large degree of sympatry across widespread ranges. This is not the same thing as claiming that founder-event speciation is the <i>only</i> important process; founder event speciation as the only important process is inferred in only one case (<i>Microlophus</i> lava lizards from the Galapagos). The importance of founder-event speciation will not be surprising to most island biogeographers. However, the results are important nonetheless, as there are still some vocal advocates of vicariance-dominated approaches to biogeography, such as Heads (2012, <i>Molecular Panbiogeography of the Tropics</i>), who allows vicariance and range-expansion to play a role in his historical inferences, but explicitly excludes founder-event speciation <i> a priori.</i> The commonly-used LAGRANGE DEC and DIVA programs actually make assumptions very similar to those of Heads, even though many users of these programs likely consider themselves dispersalists or pluralists. Finally, the inclusion of fossils and imperfect detection within the same likelihood and model-choice framework clears the path for integrating paleobiogeography and neontological biogeography, strengthening inference in both. </p><p> Model choice is now standard practice in phylogenetic analysis of DNA sequences: a program such as ModelTest is used to compare models such as Jukes-Cantor, HKY, GTR+I+G, and to select the best model before inferring phylogenies or ancestral states. It is clear that the same should now happen in phylogenetic biogeography. BioGeoBEARS enables this procedure. Perhaps more importantly, however, is the potential for users to create and test new models. Probabilistic modeling of geographic range evolution on phylogenies is still in its infancy, and undoubtedly there are better models out there, waiting to be discovered. It is also undoubtedly true that different clades and different regions will favor different processes, and that further improvements will be had by linking the evolution of organismal traits (e.g., loss of flight) with the evolution of geographic range, within a common inference framework. In a world of rapid climate change and habitat loss, biogeographical methods must maximize both flexibility and statistical rigor if they are to play a role. This research takes several steps in that direction. </p><p> BioGeoBEARS is open-source and is freely available at the Comprehensive R Archive Network (http://cran.r-project.org/web/packages/BioGeoBEARS/index.html). A step-by-step tutorial, using the <i>Psychotria</i> dataset, is available at PhyloWiki (http://phylo.wikidot.com/biogeobears). </p><p> (Abstract shortened by UMI.)</p>

Thesis (M. Env. Sc.)--University of Adelaide, Mawson Graduate Centre for Environmental Studies, 1993. / Includes bibliographical references.

No description available.

Includes bibliographical references.

The Ediacaran, particularly the late Ediacaran-Cambrian (E-") boundary (551-541 Ma), has been noted as a major time of biological and biochemical transition, including: the rise of predators, the emergence of skeletons, the radiation of bioturbators, and large fluctuations in oceanic chemical conditions (e.g. anoxia/euxinia/ferruginia) with emerging data  suggesting that it is not until the late Ediacaran Period (551-542 Ma) when pervasive oxidation of the deep oceans occurred. In addition, the study of Ediacaran paleobiology involves numerous factors, including but not limited to, restricted amount of outcrops, taphonomic biases, metamorphism, enigmatic phylogenetic affinities, non-actualistic atmospheric and oceanic conditions, and unusual taphonomic windows, making it difficult to assign order to the myriad types of fossils (both body and trace) found during this time . It is with these problems in mind that my dissertation focuses on taphonomic questions in the late Ediacaran. We observe fossil through the taphonomic window and thereby colors all aspects of the study of that organism. By understanding how an organism was preserved we can learn about other factors affecting it, such as their taxonomic affinities, paleoecology, and morphology. All of these factors were examined through taphonomic investigations and this can be seen in the analytical path through my chapters. In chapter two I examined the preservation of trace fossils in the late Ediacaran. In chapter three I analyzed the taphonomy of an exceptionally preserved Ediacaran fossil to solve its affinity, tubular trace or tubular soft-bodied fossil. In chapter four, understanding the nature of exceptional preservation, I investigated the taphonomy of an Ediacara fossil in coarse grained sediments. In chapter five, I combined the findings of the previous chapters and applied that knowledge to analyze the in situ three dimensional morphology of an Ediacara fossil. Each of the projects presented pairs new technologic methodologies (SEM, BSE-Z, EDS, Raman, microCT) with traditional paleontological and petrologic investigations (field work, hand sample, and petrographic thin-section analysis). The result of this union of Old and New are findings that expand our understanding of these earliest multicellular organisms, their modes of life, and their biological affinities. / Ph. D.

The Proterozoic period saw some of the most fundamental revolutions in the biological and geological world. During this period, life diversified and set the stage for the radiation of multicellular life, altering the face of the planet in the process. The fossil record of this time is not yet fully understood, and a revisitation of a historically reported fossil deposit in the 1 Ga Torridon rocks of northwest Scotland shows that they host the fossils of the earliest non-marine eukaryotes, as well as a full and diverse fossil assemblage preserved in sedimentary phosphates and shales. Fine scale sedimentology of the fluvio-lacustrine rocks of the Torridon Group reveals them to be laid down in a laterally variable basin with distinctly different palaeoenvironments. The resident biota is seen to be similarly variable between lithofacies. New criteria for classifying taphonomic effects are presented, and used to characterise assemblages from different palaeoenvironments, with broader applications beyond this study. The Torridon rocks are also host to macrostructures on the surfaces and soles of beds, and these are interpreted as of likely biological origin, with their variability mapped between different lithofacies. High-resolution studies of both the preserved biota and the mineralogy of the preserving medium reveal in detail not only the fine scale structure of the fossil organisms, but also the reasons for their exceptional preservation. Phosphate is analysed in detail to explain its enigmatic occurrence in Proterozoic lakes. To place the Torridon deposits in context, both older and younger rocks were examined in comparison, from the 2 Ga Gunflint Formation of Ontario, Canada, and the Precambrian-Cambrian successions of eastern Newfoundland respectively. New finds of phosphate in these rocks help to reveal biochemical interactions and evolution on the early Earth, with implications for further understanding life on our own planet and elsewhere.