Goats are found in almost every country and are an important source of protein and produce lactose-free milk. In South Africa, survival rates of goat kids are low, mainly due to malnutrition. Intensive goat production systems based on cultivated pastures were evaluated, at various stocking rates to evaluate the effects of improved nutrition on goat production. The pastures chosen to be evaluated for goat production were Pennisetum clandestinum (Kikuyu) and Secale cereale (Stooling rye). Kikuyu is one of the more important dryland summer pasture species in KwaZulu-Natal. Three stocking rates of goats on kikuyu were evaluated using ewes with kids. When analysing the period to weaning, the ewes lost weight in all stocking rate treatments and for both years. The years had a significant effect on weight loss (P<0.001; R²=95.7%) with a mean ADG of -0.0267 kg.animalˉ¹.dayˉ¹. There was a significant difference between ADGs between stocking rates, with ADGs of -0.0157, -0.026 and -0.0384 kg.animalˉ¹.dayˉ¹ at stocking rates of 30, 45 and 60 goats.haˉ¹ respectively (P<0.001; R²=95.7%). The analyses of the entire grazing period showed no significant difference in ewe ADGs between treatments, but a significant difference between the two years (P=0.03), with a mean ADG of -0.0205 kg.animalֿ¹.dayֿ¹. There was no significant difference between kid masses between treatments. There was a significant difference between kid performance between years (P<0.001; R²=21.8%). However, factors such as ewe start mass (P<0.001) and whether the kid was a singleton or a multiple (P=0.015) had an influence on kid ADG, while gender had no significant effect (P=0.446). Interpretation of the combined ewe plus kid weight revealed that the high stocking rate produced the highest total mass per hectare (P<0.001) with an overall mean of 2377 kg.haˉ¹. Kid ADG was positively correlated to ewe ADG (P=0.013; R²=5.8%) although this was not a strong relationship. Protein was negatively correlated to pasture height (P=0.036; R²=30.8%) and had a quadratic relationship with ADG (P<0.001; R²=48.4%) with maximum ADG occurring at protein levels of 26.17%. Rainfall was different between the two seasons, which affected pasture growth, with the stocking rates in the second year being too low, so the maximum stocking rate per hectare was not reached. Stooling rye is a pasture used predominantly in South Africa and is a good source of high quality winter feed. Four stocking rates were evaluated over winter, using pregnant ewes. Rainfall was not an important variable since supplementary irrigation was given and the difference in temperatures between the years was negligible. The rate of weight gain showed a similar response for both years with the level of weight gain varying significantly between years (P=0.001; R²=90.2%). The regressions for ADG on stocking rate were determined and were y=0.2340-0.00293x for 2001 (P=0.151; R²=58.0%) and y=0.1292-0.002198x for 2002 (P=0.137; R²=61.6%). Gain per hectare was determined, as were the stocking rates at which maximum gain per hectare were achieved and this was determined to be 40 goats.haֿ¹ during 2001 and 29 goats.haֿ¹ for 2002. The respective ADGs at these stocking rates were 0.1168 and 0.0633 kg.dayֿ¹ and daily gains.haֿ¹ were 4.672 and 1.898 kg.haֿ¹.dayֿ¹ respectively. Herbage analyses revealed that there were extremely high levels of protein in the pasture (33.87%) even though the pasture was not excessively fertilised. Average daily gain was negatively related to NDF levels (P=0.006; R²=38.4%). ADF levels (P<0.001; R²=48.4%) and NDF levels (P<0.001; R²=60.4%) showed a quadratic relationship with pasture age. Blood serum revealed that selenium levels in all treatments were lower than the normal range, while all other minerals were within the normal range. To maximise animal performance, the highest quality pasture should be offered to producing animals, namely growing animals. The seasonal variation between years has a large effect on the performance of goats on pastures. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2011.

The maternal lineages and origins of the South African goat populations are unknown and hence pose challenges for breed characterization and conservation. This study investigated the maternal lineages of South African goats using complete mtDNA and ascertained the genetic diversity in the growth hormone gene within and between populations. Illumina MiSeq next generation sequencing was used to generate the full length of the mtDNA (16.64 kb) and growth hormone (2.54kb) genes in 50 goats of the commercial South African Boer (n =9), captive feral Tankwa (n =9), and SA village goat populations (n =32). The non-descript village populations were sampled from villages of the four major goat-producing provinces; (i) Hobeni village, Elliotdale municipality and Pechelsdam village, Inxubayethemba municipality in Eastern Cape (n=8), (ii) Coniliva and Ngubo villages in Msinga municipality Kwa-Zulu Natal (n=8), (iii) Mukovhabale village, Mutale municipality and Muila-muumone, Makhado municipality in Limpopo (n=8) and (iv) Pella village (n=6), Moses Kotane municipality North West (n=8) provinces of South Africa. A total of 184 SNPs and 55 AA changes were observed across the complete mtDNA genome. High within-population variation was observed in all the groups, ranging from 98.60 to 99.52%. A low FST (FST = 0.003-0.049) indicated close relatedness and possible gene flow between SA goat populations. Haplotypes and clades observed in the D-loop, COX1 and whole mtDNA network trees demonstrated relationships between South African goat populations. The South African goats clustered with Chinese goats from lineages A and B, suggesting common maternal lineages between the Chinese and South African goat populations. The results also suggested that the bezoar (Capra aegagrus) is a possible ancestor of South African domestic goats. A range of 27 to 58 SNPs per population were observed on the growth hormone gene. Amino acid changes from glycine to serine, tyrosine to cysteine and arginine to glycine were observed at exon 2 and exon 5. Gene diversity ranged from 0.8268 ± 0.0410 to 0.9298 ± 0.0050. Higher within breed diversity (97.37%) was observed within the population category consisting of SA village ecotypes and the Tankwa goats. Highest pairwise FST values ranging from 0.148 to 0.356 were observed between the SA Boer and both the SA village and Tankwa feral goat populations. The maximum likelihood phylogenetic analysis indicated nine genetic clades, which reflected close relationships between the South African populations and the other international breeds. Results imply greater potential for within population selection programs particularly with SA village goats. / Life and Consumer Sciences / M.Sc. (Statistical Genomics)

Effects of Acacia karroo supplementation on meat quality of Xhosa Lop-Eared goats The objective of the study was to determine the effects of A. karroo supplementation on the quality of meat from Xhosa lop-eared goats. Eighteen castrated 4-month-old Xhosa lop-eared male kids were kept at the University of Fort Hare Farm until slaughter. At the beginning of the experiment the goats had a mean body weight of 13.5 ± 0.31 kg (mean ± S.E.) and a mean body condition score (BCS) of 3.3 ± 0.16 (mean ± S.E.). From birth until weaning the kids were kept on natural pastures with their mothers. After weaning the goats were housed in an open sided barn for a period of 60 days, and were fed 500 g/head/day of Medicago sativa hay covering their maintenance and growth needs. For the purpose of the experiment, the goats were randomly divided into two balanced treatment groups of nine goats each, supplemented group (AK) and non-supplemented group (NS). The supplemented group received an additional 200g per head per day of fresh A. karroo leaves collected each day for two months. Supplementary feed was given to the goats individually in feeding troughs. The kids were slaughtered at 60 days old and samples for meat quality assessment were taken from the Longistimus dorsi muscle. The effect of A. karroo supplementation on meat quality measurements such as ultimate pH, colour and cooking losses of meat from indigenous Xhosa lop-eared goats were determined. The effect of A. karroo supplementation on the consumer sensory characteristic scores of the meat from the indigenous Xhosa lop-eared breed was also determined. There was a significant effect of the A. karroo supplementation on the meat quality measurements except for L* and a* colour coordinates. Meat from the A. karroo supplemented goats had lower pH and cooking loss scores than that of the non-supplemented goats. Acacia karroo supplementation improves meat tenderness and juiciness. There were no significant effects of A. karroo supplementation on the flavour and off- iv flavours of the meat from the supplemented goats. However, thermal preparation and consumer background had a significant effect on the meat sensory characteristics. The cooked meat had significantly higher sensory scores than the roasted meat. Female consumers reported higher sensory scores than male consumers. Consumers of different tribes and ages also reported significantly different sensory scores of meat from indigenous Xhosa lop-eared goats. Therefore, this study indicated that A. karroo supplementation can be fed to the Xhosa lop-eared goats to improve their meat quality.

Department of Animal Science / PhD (Agric)

MSCAGR (Animal Science) / Department of Animal Science / The Boer goat (Capra hircus) is one of the most desirable goat breeds for meat production. The impact of cryopreservation on the viability of its semen depends on the extenders, freezing and thawing methods. This study evaluated the effects on sperm viability in Boer goat semen extended using Bioxcell, Biladyl and Ham’s F10, and frozen in semen straws placed on a rack at 4, 5, 6 or 7 cm above the surface of liquid nitrogen. After storage in liquid nitrogen for 7 days, the frozen semen was thawed at 37 oC for 30 seconds or 90 oC for 5 seconds. Samples of sperm were also frozen to -196 oC in a programmable freezer, as the control regime for the freezing treatments. Sperm morphology, motility and viability were evaluated using the computer aided sperm analysis (CASA) system in a randomised design in which the treatments were in a 3 (extender) X 5 (freezing regime) and X 2 (thawing regime) factorial arrangement. The extenders Bioxcell and Biladyl were affected in the total motility, progressive motility and static (P<0.01), the motility was overall maintained only in straws placed at 5 cm above the liquid nitrogen level, with significant difference for the interaction extender X freezing regime in the total motility (p<0.01), non-progressive motility (p<0.05) and progressive motility (p<0.01), the 37 oC for 30 sec thawing regime had significantly more (P<0.05) in cut-head spermatozoa. Ham’s F10 extender had significantly lower normal spermatozoa (P<0.05) compare to Biladyl and Bioxcell extenders. In conclusion, the extender type, freezing and thawing regime were important factors for consideration in goat semen / NRF