Biopharmaceuticals are becoming one of the most promising drugs on the market mainly due to their successful treatment of a vast array of serious diseases, such as cancers, immune disorders, and infections. Structurally, biopharmaceuticals are proteins and it is important to mention that more than 60 % of biopharmaceuticals are glycosylated. Glycosylation is one of the most common posttranslational modifications. It is also the most demanding and the most complex posttranslational modification. The research showed that glycosylation can significantly impact on the safety, efficiency, and quality of the therapeutic glycoproteins. In the first part of the introduction of the present thesis, the development of the therapeutic glycoproteins and their classification were reviewed. Glycosylation process and nomenclature were also discussed. The second part of the introduction revealed current issues in the field of the production and the characterization of the therapeutic glycoproteins. In the context of the doctoral thesis, we introduced new approach, namely hydrophilic interaction liquid chromatography coupled to a high-resolution mass spectrometer (HILIC-HR-MS) combined with Principal Component Analysis (PCA) and classification through Soft Independent Modelling by Class Analogy (SIMCA) data treatment. Accordingly, N-glycans were first enzymatically released using peptide-N-glycosidase F (PNGase F) and reduced using sodium borohydride. Then those N-glycans were separated by HILIC and detected by HR-MS. PCA and SIMCA simplified interpretation of the MS data collected in the huge tables. PCA was applied to test whether it is possible to visualize N-glycosylation differences between samples and to help identifying within which N-glycans changes occurred. SIMCA, which is a more complex data analysis technique, was applied to build and validate a classification models. SIMCA was also applied to verify whether it is possible to use built models to classify real samples. Described approach enabled us to detect small changes in N-glycosylation of the therapeutic glycoproteins (a change of only 1% in relative glycan abundance). It was applied to assess changes in N-glycosylation of therapeutic glycoproteins. Accordingly, we tested N-glycosylation consistency between batches of infliximab, trastuzumab, and bevacizumab and monitored the N-glycosylation of bevacizumab over storage time in plastic syringes.Furthermore, we worked on the faster sample preparation technique, where online-solid-phase extraction (SPE)-LC was combined to the previously mentioned HILIC-MS-PCA/SIMCA method. Online-SPE-LC allowed us to faster the sample preparation in terms of avoiding time-consuming cleaning steps. / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

<p>  </p> <p>Atmospheric aerosols formed through primary emissions, secondary gas-particle formations, and multi-phase chemical processes are composed of solid, semi-solid, or liquid-like particles suspended in the air that have direct implications towards the global radiative balance and human health as air pollutants.  Direct emissions of primary organic aerosols (POA; e.g. soot, BrC) and multi-phase formation of secondary organic aerosols (SOA) from the oxidation of biogenic monoterpene isomers represent two important sources/classes of particulate matter in the atmosphere. Multi-phase chemical processes driving the atmospheric and environmental aging through the photochemistry of iron(III), FeIII in organic aerosol particles and aqueous media drives the multiphase chemistry leading to systematic aging of their chemical composition and modifications to resulting light-absorption properties. The molecular composition, organic structures, physical properties, and sources of emissions are complex requiring development of powerful multi-modal analytical metrology, such as high-resolution mass spectrometry (HRMS) hyphenated with liquid chromatography (LC), photodiode array optical detection, drift tube ion mobility (IM) spectrometry, and desorption and ambient ionization of multi-components mixtures in atmospheric particles using temperature programmed desorption Direct analysis in real time (TPD-DART). Disseminating the molecular-specific composition, chemical and physical properties of complex mixtures in atmospheric organic particles and mixed inorganic/organic systems will help improve our understanding of their formation mechanisms, transformative chemical ageing processes, as well as improved detection of individual components in complex mixtures. </p> <p>     </p> <p>Chapter 1 and 2 of dissertation introduces complexity of atmospheric organic, carbonaceous aerosols, and complex environmental mixtures and discusses analytical metrology, experiments, and data analysis procedures used for detailed molecular-level characterization of mixtures. Chapter 3 the development of a robust analytical method for untargeted screening and determination of the physical and chemical properties (e.g. vapor pressures, enthalpies of sublimation, and saturation mass concentrations) of single components out of complex SOA particles using temperature programmed desorption Direct analysis in real time ionization – high resolution mass spectrometry (TPD-DART-HRMS).  Chapter 4 introduces the use of ion mobility - mass spectrometry (IM-MS) separation and multidimensional characterization of structural isomers in complex SOA mixtures. The chapter discusses the advanced usage of IM-MS to investigate the molecular and structural properties of isomers of alpha-pinene and limonene derived SOA, use of advanced data analysis procedures to resolved complex conformational and structural isomers, and investigate single-molecule structural changes from atmospheric-like ageing in SOA particles using IM-MS.  Chapter 5 discusses the chemical characterization and analysis of individual brown carbon (BrC) chromophores out of mixture of colorless organic carbon constituents and insoluble soot particles generated from controlled flame combustion of ethane fuel, a surrogate system representing gasoline combustion of motor vehicles. The chapter focuses on the quantitative method development and use of state-of-the-art liquid chromatography coupled to photodiode array followed by dopant assisted atmospheric pressure photoionization and HRMS (LC-PDA-HRMS) analysis, followed by conversion to quantitative optical information for comparisons with retrieved literature reports. Chapter 6 examines the complex multiphase photochemical cycling of Fe(III)-citrate, a relevant proxy for [FeIII-carboxylate]2+ complexes in atmospheric water using complementary analytical metrology of optical spectroscopy, LC-PDA-HRMS, oil immersion flow microscopy. Multi-modal datasets from these complementary techniques provide a unique experimental description of various stages of FeIII-citrate photochemistry, elucidate individual components of this reacting system, determine mechanistic insights, and quantify environmental parameters affecting the photochemistry. </p>