Much of the current research into the processing and storage of carbon (C) in small lakes has focused on arctic and boreal lake systems, due to their global abundance. However this has led to an imbalance in the interpretation of lake functioning. Oligotrophic lakes are prevalent in the arctic and boreal zone, but are typically net heterotrophic due to loading of catchment-derived dissolved organic carbon (DOC) which alters their metabolic balance. In comparison, temperate lake systems tend to be more nutrient rich, typically due to anthropogenic activity, and would therefore be expected to exhibit the signs of net autotrophy, as a result of higher rates of gross primary production (GPP) and lower rates of catchment-derived DOC potentially subsidising respiration (R). In order to test the hypothesis that temperate, eutrophic lakes are net autotrophic (GPP > R) on an annual basis the C-dynamics of Rostherne Mere (maximum depth, zm, 31 m) and Tatton Mere (zm = 11 m), two monomictic Cheshire-Shropshire meres, were quantified over an 18 months period from 2010 2012. This monitoring study used high-resolution (hourly) oxygen (O2) sonde measurements, combined with high-resolution data from an automated on-lake monitoring buoy at Rostherne Mere (as part of the national UKLEON lake network) to calculate rates of epilimnion C-fixation. For both lakes, sediment traps were also used to determine water column C-flux and sediment core data to establish C-burial efficiency of these strongly stratifying lakes. Water column profiles of dissolved O2 and CO2 was also measured at 2 4 weekly intervals across both lakes. Particular attention was focused on: i) the long term C-storage of eutrophic, monomictic lakes; ii) up-scaling C-accumulation estimates from these two meres to the Cheshire-Shropshire meres region and all UK eutrophic waters; and iii) methodological sensitivity for estimating C-fixation, flux and burial efficiency and upscaling C-accumulation estimates. The results show that both lakes are net autotrophic on an annual basis, on average fixing 121 ± 2 g C m-2 yr-1 and sequestering 68 ± 4 g C m-2 yr-1, a C-burial efficiency of ~60%. If up-scaled to the Cheshire-Shropshire meres region, annual C-accumulation was estimated to be 506 ± 32 t C yr-1 or 0.05 ± 0.001 Mt C since 1900. From this, it was estimated that UK eutrophic waters could be sequestering 0.12 ± 0.01 Mt C yr-1 or 13.3 ± 0.2 Mt C since 1900. Annual UK CO2 emissions are ~128.85 Mt C yr-1, therefore UK eutrophic waters currently offset 0.09% of yearly UK CO2 emissions. Despite the finding that eutrophic, stratifying lakes have high C-fixation and sequestration values, lakes in other areas of the globe such as the arctic and boreal zones are typically a more important long term C-sink as they are far more abundant within the landscape and local soils are typically very poor within low C retention rates. Further investigation is needed into how lakes function on a regional and national scale, the importance of lake type and number when up-scaling C accumulation estimates and the potential impact on future C accumulation as a result of a changing environment and supra-regional policies in areas such as Europe.

Ce travail de thèse s’inscrit dans une démarche d’approfondissement des connaissances du fonctionnement des aquifères karstiques. Pour cela, le site pilote des Sources du Toulon, siège d’une alimentation multiréservoirs, a été choisi et offre une fenêtre d’observation privilégiée sur les relations hydrogéologiques entre les aquifères de la marge Nord du Bassin aquitain. Elles sont utilisées depuis 1832 pour l’alimentation en eau potable de la ville de Périgueux, et constituent actuellement son unique ressource.L’objectif de ce travail a été de tester une approche multi-traceurs et un suivi haute-résolution pour caractériser le fonctionnement et la vulnérabilité d’un aquifère karstique multicouche.L’utilisation d’une approche couplée hydrodynamique et hydrochimie a mis en évidence l’alimentation des Sources du Toulon par une ressource profonde et captive en complément d’un aquifère libre plus superficiel. Ces informations ont été intégrées dans le contexte hydrogéologique global de la zone d’étude pour proposer une nouvelle délimitation du bassin d’alimentation des Sources du Toulon.L’utilisation d’un suivi haute-résolution a permis de préciser le fonctionnement hydrogéologique du système karstique étudié. Il en ressort des fonctionnements différents suivants les crues, avec des transferts de masse pouvant s’étendre de quelques jours à quelques semaines.L’apport des isotopes des nitrates (δ15N-NO3- ; δ18O-NO3-) a permis d’identifier deux origines des nitrates mesurés dans les eaux de surface et souterraines : les fertilisants minéraux de synthèse utilisés pour l’agriculture, et les rejets d’assainissement individuels.L’évaluation temporelle de la vulnérabilité spécifique des Sources du Toulon à certains marqueurs de contamination tels que les particules, les éléments bactériologiques et les nitrates a permis de distinguer plusieurs masses d’eau superficielles et subsuperficielles participant à l’alimentation pendant les crues, et jouant un rôle différent dans le transfert des contaminants. / This work is included in an approach for a better knowledge of karst aquifers. For this, the Toulon Springs pilot site was chosen, and provides the opportunity to study relationships between multilayered karst aquifers of the northern edge of the Aquitaine sedimentary basin. Toulon Springs are major regional springs and are located in Périgueux (Dordogne County, France). They have been supplying water to the metropolitan area of Périgueux since 1832.This work aim to test an innovative multitracer approach coupled with a physicochemical high-resolution auto-monitoring to characterize functioning and vulnerability of a multilayered karst aquifer.The use of a coupled hydrodynamic and hydrochemical approach has highlighted Toulon Springs supply by a deep and captive aquifer, in addition to a more subsuperficial aquifer. This information has been incorporated into the global hydrogeological situation of the study area to propose a new delineation of Toulon Springs hydrogeological cathment.The use of a high-resolution monitoring enables to specify the hydrogeological functioning of the studied karst system. The analysis performed on several flood events, identify that mass transfer can range from a few days to a few weeks.The use of nitrate isotope (δ15N-NO3- ; δ18O-NO3-) enables to identify two main nitrate sources in both surface water and groundwater: (i) inorganic fertilizer; (ii) sewage from individual house.The last part of this work was to analyse Toulon Springs temporal vulnerability during floods to marker of contamination such as particles, dissolved organic carbon, nitrate, and bacteria. Hence, several water type from surface runoff, unsaturated zone and saturated zone were identify as responsible of contaminant transfer: (i) water from saturated zone is responsible of vulnerability to mineral particles ; (ii) water from unsaturated zone is responsible of vulnerability to nitrare ; (iii) water from surface runoff is responsible of vulnerability to bacteria contamination.