Yes / Detecting multiple ocular diseases in fundus images is crucial in ophthalmic diagnosis. This study introduces the Fundus-DeepNet system, an automated multi-label deep learning classification system designed to identify multiple ocular diseases by integrating feature representations from pairs of fundus images (e.g., left and right eyes). The study initiates with a comprehensive image pre-processing procedure, including circular border cropping, image resizing, contrast enhancement, noise removal, and data augmentation. Subsequently, discriminative deep feature representations are extracted using multiple deep learning blocks, namely the High-Resolution Network (HRNet) and Attention Block, which serve as feature descriptors. The SENet Block is then applied to further enhance the quality and robustness of feature representations from a pair of fundus images, ultimately consolidating them into a single feature representation. Finally, a sophisticated classification model, known as a Discriminative Restricted Boltzmann Machine (DRBM), is employed. By incorporating a Softmax layer, this DRBM is adept at generating a probability distribution that specifically identifies eight different ocular diseases. Extensive experiments were conducted on the challenging Ophthalmic Image Analysis-Ocular Disease Intelligent Recognition (OIA-ODIR) dataset, comprising diverse fundus images depicting eight different ocular diseases. The Fundus-DeepNet system demonstrated F1-scores, Kappa scores, AUC, and final scores of 88.56%, 88.92%, 99.76%, and 92.41% in the off-site test set, and 89.13%, 88.98%, 99.86%, and 92.66% in the on-site test set.In summary, the Fundus-DeepNet system exhibits outstanding proficiency in accurately detecting multiple ocular diseases, offering a promising solution for early diagnosis and treatment in ophthalmology. / European Union under the REFRESH – Research Excellence for Region Sustainability and High-tech Industries project number CZ.10.03.01/00/22_003/0000048 via the Operational Program Just Transition. The Ministry of Education, Youth, and Sports of the Czech Republic - Technical University of Ostrava, Czechia under Grants SP2023/039 and SP2023/042.