Of the 430+ extant species of Gyrodactylus, ectoparasitic monogenetic flukes of aquatic vertebrates, Gyrodactylus salaris Malmberg, 1957 is arguably the most well-known. Following the introduction of this species into Norway in the 1970s with consignments of infected Atlantic salmon smolts, Salmo salar L., this species has had a devastating impact on the Norwegian Atlantic salmon population, decimating wild stocks in over 40 rivers. Gyrodactylus salaris is the only OIE (Office International des Epizooties) listed parasitic pathogen of fish and has been reported from 19 countries across Europe, though many of these records require confirmation. The UK, Ireland and some selected watersheds in Finland are currently recognised as G. salaris-free states; however, the threat that this notifiable parasite poses to the salmon industry in the UK and Ireland is of national concern. Current British contingency plans are based on the assumption that if G. salaris were to be introduced, the parasite would follow similar dynamics to those on salmonid stocks from across Scandinavia, i.e. that Atlantic strains of Atlantic salmon would be highly susceptible to infection, with mortalities resulting; that brown trout, Salmo trutta fario L., would be resistant and would lose their infection in a relatively short period of time; and that grayling, Thymallus thymallus (L.), would also be resistant to infection, but would carry parasites, at a low level, for up to 143 days. Two of the objectives of this study were to confirm the current distribution of G. salaris across Europe, and then, to investigate the relative susceptibility of British salmonids to G. salaris, to determine whether they would follow a similar pattern of infection to their Scandinavian counterparts or whether, given their isolation since the last glaciation and potential genetic differences, they would exhibit different responses. It has been almost six years since the distribution of G. salaris across Europe was last evaluated. Some of the European states identified as being G. salaris-positive, however, are ascribed this status based on misidentifications, on partial data resulting from either morphological or molecular tests, or according to records that have not been revisited. Additional Gyrodactylus material from selected salmonids was obtained from several countries to contribute to current understanding regarding the distribution of G. salaris across Europe. From the work conducted in the study, G. salaris is reported from Italy for the first time, alongside three other species, and appears to occur extensively throughout the central region without causing significant mortalities to their rainbow trout, Oncorhynchus mykiss (Walbaum), hosts. The analysis of archive material from G. salaris-positive farms would suggest that G. salaris has been in the country for at least 12 years. Material obtained from rainbow trout from Finland and Germany was confirmed as G. salaris supporting existing data for these countries. No specimens of G. salaris, however, were found in the additional Gyrodactylus material obtained from Portuguese and Spanish rainbow trout, only Gyrodactylus teuchis Lautraite, Blanc, Thiery, Daniel et Vigneulle, 1999, a morphologically similar species was found. Gyrodactylus salaris is now reported from 23 out of ~50 recognised states throughout Europe, only 17 of these however, have been confirmed by either morphology or by an appropriate molecular test, and only ten of these records have been confirmed by a combination of both methods. To assess the susceptibility of English and Welsh salmonids to G. salaris, a number of salmonid stocks of wild origin, were flown to the Norwegian Veterinary Institute (NVI) in Oslo, where they were experimentally challenged with G. salaris. Atlantic salmon from the Welsh River Dee, S. trutta fario from the English River Tyne and T. thymallus from the English River Nidd, raised from wild stock in government hatcheries, were flown out and subsequently challenged with G. salaris haplotype A. After acclimation, each fish was infected with ~50–70 G. salaris and marked, so that parasite numbers on individual fish could be followed. The dynamics on individual fish were followed against a control (Lierelva Atlantic salmon). The experiment found that the number of G. salaris on S. salar from the River Dee continued to rise exponentially to a mean intensity (m.i.) of ~3851 G. salaris fish-1 (day 40 post-infection). These salmon were highly susceptible, more so than the Norwegian salmon control (m.i. ~1989 G. salaris fish-1 d40 post-infection) and were unable to regulate parasite numbers. The S. trutta fario and T. thymallus populations, although initially susceptible, were able to control and reduce parasite burdens after 12 (m.i. ~146 G. salaris fish-1) and 19 (m.i. ~253 G. salaris fish-1) days, respectively when peak infections were seen. Although the latter two hosts were able to limit their G. salaris numbers, both hosts carried infections for up to 110 days (i.e. when the experiment was terminated). The ability of S. trutta fario and T. thymallus to carry an infection for long periods increases the window of exposure and the potential transfer of G. salaris to other susceptible hosts. The potential role that brown trout may play in the transmission and spread of G. salaris in the event of an outbreak, needs to be considered carefully, as well as the interpretation of the term “resistant” which is commonly used when referring to brown trout’s susceptibility to G. salaris. The current British surveillance programmes for G. salaris are focused on the screening of Atlantic salmon and on the monitoring of the rainbow trout movements. The findings from this study demonstrate that G. salaris can persist on brown trout for long periods, and suggest that brown trout sites which overlap with Atlantic salmon or rainbow trout sites are also included within surveillance programmes and that the role that brown trout could play in disseminating infections needs to be factored into contingency/management plans. Throughout the course of the study, a number of parasite samples were sent to the Aquatic Parasitology Laboratory at Stirling for evaluation. Some of these samples represented Gyrodactylus material that were associated with fish mortalities, but the species of Gyrodactylus responsible appeared to be new to science. A further aspect of this study was, therefore, to investigate these Gyrodactylus related mortalities in aquaculture stock and to describe the species found in each case, which may represent emerging pathogens. The two new species, Gyrodactylus orecchiae Paladini, Cable, Fioravanti, Faria, Di Cave et Shinn, 2009 and Gyrodactylus longipes Paladini, Hansen, Fioravanti et Shinn, 2011 on farmed gilthead seabream, Sparus aurata L., were collected from several Mediterranean farms. The finding of G. orecchiae in Albania and Croatia was associated with 2–10% mortality of juvenile stock and represents the first species of Gyrodactylus to be formally described from S. aurata. Subsequently, G. longipes was found in Bosnia-Herzegovina and Italy, and at the Italian farm site, it occurred as a mixed infection with G. orecchiae, but these infections did not appear to result in any loss of stock. Unconfirmed farm reports from this latter site, however, suggest that a 5–10% mortality of juvenile S. aurata was also caused by an infection of Gyrodactylus, which is suspected to be G. longipes. Additional samples of Gyrodactylus from a gilthead seabream farm located in the north of France have been morphologically identified as G. longipes, extending the geographical distribution of this potentially pathogenic species to three countries and three different coasts. In addition to these samples, some specimens of Gyrodactylus from a Mexican population of rainbow trout were sent for evaluation.

A DNA microarray capable of detecting 445 virulence factors (VFs) and antibiotic resistance genes was used to assess human and animal fecal E. coli isolates for pathogenic potential and host specificity. The only enteric pathotype detected was atypical EPEC, which was found in 3.7% of all isolates. 17% of human isolates were extraintestinal pathotypes, with the majority of these being uropathogenic. Isolates from humans and chickens were the most likely to have resistance to at least one class of antibiotic. VFs that were found almost exclusively in human isolates, when compared to one other group, included sat (10% of human isolates and no animal isolates), iucD and iut (24% of human, <1% mammal) and iha (16% human, <1% wild avian). Decision trees utilizing multiple probes to identify the source of an E. coli isolate were able to correctly identify the source of 79% of validation isolates in a human vs. animal comparison. / Environment Canada

<p>Koi and goldfish have been released into rivers in South Africa since the 1800&rsquo / s for food and sport fish and have since spread extensively. These fish are present in most of the river systems in South Africa and pose an additional threat the indigenous cyprinids in the Western Cape. Monogenean parasites of the genus Gyrodactylus are of particular concern, as their unique biology renders them a possible threat. Gyrodactylus kherulensis and G. kobayashii were identified from koi and goldfish respectively imported from Asia, Europe and locally bred fish. Morphometrics and the use of statistical classifiers, which includes univariate (ANOVA and Kruskal-Wallis), bivariate (Pearson&rsquo / s correlation) and multivariate (Principal Component Analysis) placed the two species within their respective groups. There was some intraspecific variation among the different populations collected from the various locations, especially in the hamulus and ventral bar features, but the marginal hooklets, however, remained static for both helminth species.</p>

The genus Ceratomyxa Thélohan, 1892 is one of the largest myxozoan genera, the species of which almost always infect the gall bladder of marine teleosts. Although there are over 180 species known globally, prior to this study only three had been described from Australia. This study explores the systematics, host specificity and species richness of Ceratomyxa species from a diverse range of Queensland marine fishes. The first part of this thesis deals with the issues associated with spore based taxonomy and incorporates the first molecular studies to investigate host specificity and radiation in three common families of Great Barrier Reef (GBR) fishes. Twenty-two new species were described in these chapters, and although they were superficially similar in morphology all were genetically distinct. A focus on Ceratomyxa spp. infecting labrid, pomacentrid and serranid fish revealed tight host specificity of parasite species, confirmed the presence of multiple parasite species in a single host and revealed that no parasite radiation had occurred that could be associated with co-evolution with host families. Exploration of intra- and inter-specific variation by sequencing of multiple replicates from host/parasite combinations allowed interpretation of species boundaries within the system. Ten additional species described in Chapter 5 supported the findings from the labrid, pomacentrid and serranid studies but broadened the host range studied. In total 32 Ceratomyxa species were described from Queensland fishes increasing the number of described species in the genus by 15%. This study also reports on undescribed species collected from a further 70 host species and broadens the known host range to seven families of fishes. A checklist of bivalvulidans from marine teleosts in Australia is compiled of described and undescribed species and highlights the abundance of Ceratomyxa relative to other gall bladder dwelling myxosporeans. A phylogeny of the Ceratomyxa based on SSU rDNA analyses explored the taxonomic integrity of the genus. In general, the morphological diagnostic characters that divide the Myxozoa into genera are not well supported by molecular phylogenetic analyses. The relationship between 42 Ceratomyxa spp. and 36 other marine myxosporeans was examined using Bayesian inference, maximum likelihood and maximum parsimony. Results indicate Ceratomyxa is one of the most cohesive lineages within the Myxozoa and that the freshwater fish parasite, C. shasta, does not represent an independent lineage as suggested in previous studies. The strict host specificity of Ceratomyxa species prompted the investigation of species richness on the GBR. Species accumulation curves were used to explore species richness by using Choa2 and Jackknife1 estimators. The estimates suggested Ceratomyxa is almost as rich as their teleost hosts and that 1,600 species could be present on the GBR and as many as 15,000 species may exist globally. As an unexpected result, Ceratomyxa may be the richest metazoan genus in the sea. In light of what the study revealed, a revision of a second genus within the family Ceratomyxidae, Leptotheca, is presented. The boundaries between Ceratomyxa and Leptotheca were unclear. The diagnostic characters that separate these genera (length to thickness ratios) were found to be plastic and the type species of Leptotheca ultimately fitted the diagnosis for Ceratomyxa. To eliminate confusion between these genera and also between Sphaerospora and Leptotheca, the genus Leptotheca was considered invalid, with all species appropriately assigned to other genera based on morphological and biological characters and supported by genetic evidence.

The genus Ceratomyxa Thélohan, 1892 is one of the largest myxozoan genera, the species of which almost always infect the gall bladder of marine teleosts. Although there are over 180 species known globally, prior to this study only three had been described from Australia. This study explores the systematics, host specificity and species richness of Ceratomyxa species from a diverse range of Queensland marine fishes. The first part of this thesis deals with the issues associated with spore based taxonomy and incorporates the first molecular studies to investigate host specificity and radiation in three common families of Great Barrier Reef (GBR) fishes. Twenty-two new species were described in these chapters, and although they were superficially similar in morphology all were genetically distinct. A focus on Ceratomyxa spp. infecting labrid, pomacentrid and serranid fish revealed tight host specificity of parasite species, confirmed the presence of multiple parasite species in a single host and revealed that no parasite radiation had occurred that could be associated with co-evolution with host families. Exploration of intra- and inter-specific variation by sequencing of multiple replicates from host/parasite combinations allowed interpretation of species boundaries within the system. Ten additional species described in Chapter 5 supported the findings from the labrid, pomacentrid and serranid studies but broadened the host range studied. In total 32 Ceratomyxa species were described from Queensland fishes increasing the number of described species in the genus by 15%. This study also reports on undescribed species collected from a further 70 host species and broadens the known host range to seven families of fishes. A checklist of bivalvulidans from marine teleosts in Australia is compiled of described and undescribed species and highlights the abundance of Ceratomyxa relative to other gall bladder dwelling myxosporeans. A phylogeny of the Ceratomyxa based on SSU rDNA analyses explored the taxonomic integrity of the genus. In general, the morphological diagnostic characters that divide the Myxozoa into genera are not well supported by molecular phylogenetic analyses. The relationship between 42 Ceratomyxa spp. and 36 other marine myxosporeans was examined using Bayesian inference, maximum likelihood and maximum parsimony. Results indicate Ceratomyxa is one of the most cohesive lineages within the Myxozoa and that the freshwater fish parasite, C. shasta, does not represent an independent lineage as suggested in previous studies. The strict host specificity of Ceratomyxa species prompted the investigation of species richness on the GBR. Species accumulation curves were used to explore species richness by using Choa2 and Jackknife1 estimators. The estimates suggested Ceratomyxa is almost as rich as their teleost hosts and that 1,600 species could be present on the GBR and as many as 15,000 species may exist globally. As an unexpected result, Ceratomyxa may be the richest metazoan genus in the sea. In light of what the study revealed, a revision of a second genus within the family Ceratomyxidae, Leptotheca, is presented. The boundaries between Ceratomyxa and Leptotheca were unclear. The diagnostic characters that separate these genera (length to thickness ratios) were found to be plastic and the type species of Leptotheca ultimately fitted the diagnosis for Ceratomyxa. To eliminate confusion between these genera and also between Sphaerospora and Leptotheca, the genus Leptotheca was considered invalid, with all species appropriately assigned to other genera based on morphological and biological characters and supported by genetic evidence.

The genus Ceratomyxa Thélohan, 1892 is one of the largest myxozoan genera, the species of which almost always infect the gall bladder of marine teleosts. Although there are over 180 species known globally, prior to this study only three had been described from Australia. This study explores the systematics, host specificity and species richness of Ceratomyxa species from a diverse range of Queensland marine fishes. The first part of this thesis deals with the issues associated with spore based taxonomy and incorporates the first molecular studies to investigate host specificity and radiation in three common families of Great Barrier Reef (GBR) fishes. Twenty-two new species were described in these chapters, and although they were superficially similar in morphology all were genetically distinct. A focus on Ceratomyxa spp. infecting labrid, pomacentrid and serranid fish revealed tight host specificity of parasite species, confirmed the presence of multiple parasite species in a single host and revealed that no parasite radiation had occurred that could be associated with co-evolution with host families. Exploration of intra- and inter-specific variation by sequencing of multiple replicates from host/parasite combinations allowed interpretation of species boundaries within the system. Ten additional species described in Chapter 5 supported the findings from the labrid, pomacentrid and serranid studies but broadened the host range studied. In total 32 Ceratomyxa species were described from Queensland fishes increasing the number of described species in the genus by 15%. This study also reports on undescribed species collected from a further 70 host species and broadens the known host range to seven families of fishes. A checklist of bivalvulidans from marine teleosts in Australia is compiled of described and undescribed species and highlights the abundance of Ceratomyxa relative to other gall bladder dwelling myxosporeans. A phylogeny of the Ceratomyxa based on SSU rDNA analyses explored the taxonomic integrity of the genus. In general, the morphological diagnostic characters that divide the Myxozoa into genera are not well supported by molecular phylogenetic analyses. The relationship between 42 Ceratomyxa spp. and 36 other marine myxosporeans was examined using Bayesian inference, maximum likelihood and maximum parsimony. Results indicate Ceratomyxa is one of the most cohesive lineages within the Myxozoa and that the freshwater fish parasite, C. shasta, does not represent an independent lineage as suggested in previous studies. The strict host specificity of Ceratomyxa species prompted the investigation of species richness on the GBR. Species accumulation curves were used to explore species richness by using Choa2 and Jackknife1 estimators. The estimates suggested Ceratomyxa is almost as rich as their teleost hosts and that 1,600 species could be present on the GBR and as many as 15,000 species may exist globally. As an unexpected result, Ceratomyxa may be the richest metazoan genus in the sea. In light of what the study revealed, a revision of a second genus within the family Ceratomyxidae, Leptotheca, is presented. The boundaries between Ceratomyxa and Leptotheca were unclear. The diagnostic characters that separate these genera (length to thickness ratios) were found to be plastic and the type species of Leptotheca ultimately fitted the diagnosis for Ceratomyxa. To eliminate confusion between these genera and also between Sphaerospora and Leptotheca, the genus Leptotheca was considered invalid, with all species appropriately assigned to other genera based on morphological and biological characters and supported by genetic evidence.

Magister Scientiae (Biodiversity and Conservation Biology) / The expansion of the South African aquaculture industry coupled with the lack of effective parasite management strategies may potentially have negative effects on both the freshwater biodiversity and economics of the aquaculture sector. Koi and goldfish are notorious for the propagation of parasites worldwide, some of which have already infected indigenous fish in South Africa. Koi and goldfish have been released into rivers in South Africa since the 1800’s for food and sport fish and have since spread extensively. These fish are present in most of the river systems in South Africa and pose an additional threat the indigenous cyprinids in the Western Cape. Monogenean parasites of the genus Gyrodactylus are of particular concern, as their unique biology renders them a possible threat. Gyrodactylus kherulensis and G. kobayashii were identified from koi and goldfish respectively imported from Asia, Europe and locally bred fish. Morphometrics and the use of statistical classifiers, which includes univariate (ANOVA and Kruskal-Wallis), bivariate (Pearson’s correlation) and multivariate (Principal Component Analysis) placed the two species within their respective groups. There was some intraspecific variation among the different populations collected from the various locations, especially in the hamulus and ventral bar features, but the marginal hooklets, however, remained static for both helminth species. This illustrates again the importance of the minor variations in the marginal hook features in gyrodactylid taxonomy. Infection trials conducted by co-habitation of infected koi and goldfish with two indigenous redfin minnow species, Pseudobarbus burchelli and P. phlegethon showed that both G. kherulensis and G. kobayashii could successfully transfer and establish themselves on P. phlegethon, where the infection increased rapidly initially, but remained relatively constant thereafter. P. burchelli appeared to be inherently resistant as the parasite population growth rate initially remained steady, until the infection died off. The wild-caught indigenous fish were however not infected with any exotic Gyrodactylus species, but a new species, G. burchelli n. sp. described from the body surfaces of P. burchelli. / South Africa

Avian contact zones were suggested to act as barriers to parasite expansions. I studied haemosporidian parasites (genera Plasmodium, Haemoproteus, and Leucocytozoon) of two Nightingale species which meet in a contact zone in Europe. In total 20 lineages of parasites were detected. Surprisingly, all common lineages were shared by the two host species. The parasite prevalence vary between species (Trush Nightingales were more often parasitized than Common Nightingales.) but did not vary to a large extent within zones inside species Parasitemia of the most frequent Haemoproteus LULU1 lineage assessed by Real-Time PCR method did not differ significantly between the two host species. Six out of nine hybrids of the nightingale species were parasitized. Haemosporidian lineages found in hybrids were also frequent in the parental species. In conclusion, the nightingale contact zone seems to have only little (if any) effect on the distribution of haemosporidian parasites.

The class Kinetoplastea contains free-living and parasitic species. One of the most dominant group within the class is the order Trypanosomatida which includes obligate parasites (Trypanosoma, Leishmania) infecting a wide range of hosts. Some species are serious pathogens of humans and domestic animals and cause considerable losses. However, the majority of trypanosomatids belongs to monoxenous parasites of insect which are usually harmless to their hosts. Monoxenous trypanosomatids predominantly infect Hemiptera and Diptera. This diploma thesis is focused on the detection of monoxenous trypanosomatids in cockroaches captured in the Czech Republic and cockroaches from different breedings. Cockroaches are very suitable mechanical vectors of many different pathogens (including parasites) and are significant health threat for humans and animals. First trypanosomatids in cockroaches were documented at the beginning of the 20th century, but there is no study focused on this topic specifically. Another aim of this thesis is morphological and ultramicroscopic analysis and the study of the host specificity of the recently described species Herpetomonas tarakana, isolated from a cockroach. My findings were partly used in the already published study "Diversity of trypanosomatids in cockroaches and the...

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