The chloride intracellular channel (CLIC) family of proteins are an unusual class of chloride channels that possess the ability to auto-insert into cellular membranes. The CLICs exhibit ubiquitous tissue and cellular distributions and adopt a glutathione S-transferase fold in the soluble form that is highly conserved in vertebrates. CLIC homologues have been identified in the model organisms C. elegans and D. melanogaster, and in the former case have been extensively characterised in regards to function. In this thesis, we present the crystal structure of the D. melanogaster CLIC, revealing several unique features in the conserved invertebrate CLIC fold including an elongated C-terminal extension and metal binding site. The bound metal is identified as the potassium cation, resolving concerns regarding previously published work that assign the metal as the isoelectronic calcium cation. It has been reported that a human CLIC protein, CLIC4, translocates to the nucleus in response to cellular stress, facilitated by a putative CLIC4 nuclear localisation signal (NLS). The CLIC4 NLS adopts α-helical structure in the native CLIC4 structural fold. It is proposed that CLIC4 is transported to the nucleus via the classical nuclear import pathway after binding the import receptor, importin-α. We have determined the X-ray crystal structure of a truncated form of importin-α bound to a CLIC4 NLS bearing peptide. The NLS peptide binds the major binding site in an extended conformation similar to that observed for the classical SV40 large T-antigen NLS. A tyrosine residue within the CLIC4 NLS makes surprisingly favourable interactions by forming side chain hydrogen bonds to the importin-α backbone. This structural evidence supports the hypothesis that CLIC4 translocation to the nucleus is governed by the importin-α nuclear import pathway, providing it can undergo a conformational rearrangement that exposes the NLS in an extended conformation. We further analyse importin-α:NLS binding interactions by solving high resolution structures of truncated importin-α containing an empty binding site and bound to the SV40 NLS. A surprising interaction is discovered between importin-α and an NLS-like motif in the endogenous E. coli 30S ribosomal subunit S21, revealing new insight into importin-α recognition of full length cargo.

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Der "klassische" Importweg von Proteinen wie Transkriptionsfaktoren, Kernrezeptoren oder viralen Proteinen in den Zellkern erfolgt in Abhängigkeit der Importine alpha und beta. Während nur ein Importin beta existiert, waren zu Beginn der Arbeiten zwei humane alpha-Importine bekannt. In der vorliegenden Arbeit wird die Identifikation, Klonierung und funktionelle Charakterisierung von vier neuen humanen alpha-Importinen beschrieben. Anhand ihrer Primärstruktur wurden die sechs alpha-Importine in drei Subfamilien unterteilt. Um die Hypothese zu testen, dass die verschiedenen Importin alpha Isoformen spezifische Funktionen ausüben und sich nicht vollständig gegenseitig ersetzen können, wurde zunächst ihre Expression auf RNA- und Proteinebene analysiert. Hier ließen sich differentielle Expressionsmuster in verschiedenen humanen Zellen und Geweben nachweisen. In vitro Analysen mit rekombinant exprimierten und aufgereinigten Proteinen deuteten daraufhin, dass die neu identifizierten Isoformen tatsächliche Importfunktion besitzen, dass sich jedoch die verschiedenen alpha-Importine in ihren Substratspezifitäten unterscheiden. Verschiedene neue Substrate der alpha-Importine wurden identifiziert und deren Importwege im Detail analysiert. Unterschiede in der Regulation der Expression der alpha-Importine in Abhängigkeit von Zellproliferation, Zelldifferenzierung bzw. in unterschiedlichen Diabetesmodellen der Ratte deuteten ebenfalls auf spezifische Funktionen der verschiedenen Isoformen hin. Die spezifische Inhibition der Importin alpha Expression in kultivierten HeLa-Zellen mittels RNA-Interferenz führte bei den meisten Isoformen zu einer ausgeprägten Inhibition der Zellproliferation, wodurch erstmals der Nachweis essentieller Funktionen verschiedener alpha-Importine in lebenden humanen Zellen erbracht wurde. In weiterführenden Experimenten sollen die Ursachen für die Inhibition der Zellproliferation bei Importin alpha-Mangel geklärt und die Bedeutung der unterschiedlichen alpha-Importine in vivo weiter analysiert werden. / The "classical" import of proteins like transcription factors, nuclear receptors or viral proteins into the nucleus depends on importins alpha and beta. While only one importin beta is known, two human alpha-importins had been described. In this study the identification, cloning and functional characterisation of four novel human alpha-importins is reported. Based on their primary structures the human alpha-importins can be grouped into three distinct subfamilies. To test the hypothesis that the various alpha-Importins differ in their specific functions and cannot substitute for each other first their expression at the RNA- and protein levels were analyzed. Differential expression patterns in various human cells and tissues could be demonstrated. In vitro analyses using recombinantly expressed and purified proteins indicated, that the newly identified isoforms posses import functions in deed. However, there was evidence for differences in their substrate specific import efficacies. New substrates of the alpha-importins were identified and their import pathways analyzed in detail. Differences in the expression regulation of the alpha-importins depending on cellular proliferation and differentiation as well as in different rat models of diabetes further pointed towards specific functions of the various alpha-importins. Specific expression inhibition of several isoforms of the importin alpha protein family in cultured HeLa-cells using RNA-interference technology caused a strong inhibition of cellular proliferation. This is the first proof for essential functions of different alpha-importins in living human cells. Future experiments shall identify the mechanisms involved in the cellular proliferation inhibition due to importin a deficiency and further analyze the role of the different alpha-importins in vivo.

The N-7 methylguanosine cap structure is conserved from yeast to man. It is essential for cell proliferation as it influences several steps in eukaryotic gene expression including transcription, pre-mRNA processing, RNA export and translation. The N-7 methylguanosine cap is added co-transcriptionally to RNA pol II transcripts. In mammals, two enzymes catalyse the synthesis of the N7-methylguanosince cap. RNGTT adds an inverted guanosine group to the first transcribed nucleotide and RNMT methylates the guanosine cap at the N7-position. RNMT consists of a catalytic domain and an N-terminal domain that is absent in lower eukaryotes. Experiments presented in this thesis revealed that the N-terminus mediates RNMT recruitment to transcription start sites. Furthermore, it was found that the RNMT N-terminal domain is phosphorylated at Threonine-77 (T77) by CDK1/Cyclin B in a cell cycle-dependent manner during G2/M-phase. RNMT T77 phosphorylation activates cap methyltransferase activity in vitro. Furthermore, it negatively regulates the interaction of RNMT with KPNA2 (Importin-a), which was found to inhibit RNMT activity in vitro. RNMT T77 phosphorylation is required for normal cell proliferation suggesting an important biological function. Initial experiments indicated that RNMT T77 phosphorylation functions to regulate gene expression in a gene-specific manner. Future work is focused on establishing an experimental system to perform a genome-wide study in order to elucidate which transcripts are affected by RNMT T77 phosphorylation. To summarise, this study for the first time revealed that the RNA cap methyltransferase activity is regulated in a cell-cycle dependent manner.

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