Seagrasses are important foundation species in coastal ecosystems. Genetic diversity of seagrasses can influence a number of ecological factors including, but not limited to, disturbance resistance and resilience. Seagrasses in the Indian River Lagoon (IRL), Florida are considered to be highly disturbed due to frequent events, like algal blooms, that impair water quality, reducing available light for seagrass growth. Halodule wrightii is a dominant seagrass throughout the IRL, but its genetic diversity has only been quantified in a few Gulf of Mexico and Florida Bay populations and little is known about its potential ecological consequences. I quantified the genetic variation of H. wrightii using microsatellite markers in the southern IRL to determine: (i) how disturbance history influenced genetic diversity, (ii) if morphology of clones was, in part, genetically controlled and related to disturbance history, and (iii) if genotypes showed phenotypic plasticity in response to disturbances. In the IRL, H. wrightii populations exhibited moderate genetic diversity that varied with disturbance history. The disturbance history of a population was classified by the variance in the percent occurrence of H. wrightii over a 16-year period. Genotypic richness and clonal diversity of H. wrightii increased with increasing disturbance histories. Other genetic diversity measures (e.g., allelic richness, observed heterozygosity) did not change with disturbance history. These findings suggest that impacts to seagrass coverage over time can change the genotypic composition of populations. When different genotypes of H. wrightii were grown in a common garden, differences in leaf characteristics among genotypes provided evidence that morphological trait variation is, in part, explained by genetic variance. The disturbance history of genotypes did not directly affect morphological traits. However, significant genotype x site (within disturbance history) interactions found greater variation in shoot density and below ground traits of H. wrightii genotypes from sites of intermediate disturbance history. Traits of H. wrightii were shown to be phenotypically plastic. Significant genotype x environment interactions for shoot density and height demonstrated that genotypes responded differently by increasing, decreasing, and not changing sizes in response to light reduction. Genetic diversity of H. wrightii has strong implications for ecological function in coastal communities. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection

As ecosystems degrade globally, ecosystem services that support life are increasingly threatened. Indications of degradation are occurring in the Northern Indian River Lagoon (IRL) estuary in east central Florida. Factors associated with ecosystem degradation are complex, including climate and land use change. Ecosystem research needs identified by the Millennium Ecosystem Assessment (MA) include the need to: consider the social with the physical; account for dynamism and change; account for complexity; address issues of scale; and focus on ecosystem structure and process. Ecosystems are complex, self-organizing, multi-equilibrial, non-linear, middle-number systems that exist in multiple stable states. Results found are relative to the observation and the frame of analysis, requiring multi-scaled analytical techniques. This study addresses the identified ecosystem research needs and the complexity of the associated factors given these additional constraints. Relativity is addressed through univariate analysis of dissolved oxygen as a measure of the general health of the Northern IRL. Multiple spatial levels are employed to associate social process scales with physical process scales as basin, sub-basins, and watersheds. Scan statistics return extreme value clusters in space-time. Wavelet transforms decompose time-scales of cyclical data using varying window sizes to locate change in process scales in space over time. Wavelet transform comparative methods cluster temporal process scales across space. Combined these methods describe the space-time structure of process scales in a complex ecosystem relative to the variable examined, where the highly localized results allow for connection to unexamined variables. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2014. / FAU Electronic Theses and Dissertations Collection

The goal of this study was to develop an alternative approach to typical seagrass transplantation techniques that damage the donor bed. Floating individuals of Halodule wrightii were collected in the Indian River Lagoon (IRL), Florida, during fall of 2013 and spring of 2014, with the fall collection planted in outdoor tanks. Only 25% of individuals collected in the fall survived the winter in the tanks. Individuals from both collections were deployed onto biodegradable mats in a capped dredge hole in the IRL in March, 2014. Approximately 66% of the mats survived the six-month experiment, and the area covered by seagrass quadrupled. Growth in shoot count, average height, horizontal spread, and biomass was similar for both fall and spring treatments. Thus, time and effort of overwintering had no benefit over spring harvesting. The use of floating individuals can provide a more practical, environmentally friendly alternative to traditional transplanting for seagrass re storation. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2015. / FAU Electronic Theses and Dissertations Collection